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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
3721 A_BomaMG_comp13802_c0_seq1
708bp
FPKM:6.37 TPM:5.90
3722 A_BomaMG_comp13803_c0_seq1
579bp
FPKM:1.79 TPM:1.66
3723 A_BomaMG_comp13804_c0_seq1
852bp
PREDICTED:_uncharacterized_protein_LOC105841976_[Bombyx_mori]
FPKM:1.46 TPM:1.36
3724 A_BomaMG_comp13806_c0_seq1
376bp
PREDICTED:_zinc_finger_protein_235-like_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0001158 F cis-regulatory region sequence-specific DNA binding
GO:0003676 F nucleic acid binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007275 P multicellular organism development
GO:0008340 P determination of adult lifespan
GO:0040035 P hermaphrodite genitalia development
GO:0043053 P dauer entry
GO:0045684 P positive regulation of epidermis development
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046872 F metal ion binding
GO:1903355 P negative regulation of distal tip cell migration
FPKM:1.92 TPM:1.77
3725 A_BomaMG_comp13806_c1_seq1
272bp
hypothetical_protein_SCABRO_00934,_partial_[Candidatus_Scalindua_brodae]
FPKM:2.18 TPM:2.02
3726 A_BomaMG_comp13808_c0_seq1
514bp
PREDICTED:_uncharacterized_protein_LOC105389963_[Plutella_xylostella]
FPKM:1.53 TPM:1.42
3727 A_BomaMG_comp1380_c0_seq1
258bp
AER035Wp_[Eremothecium_gossypii_ATCC_10895]
FPKM:1.69 TPM:1.57
3728 A_BomaMG_comp13810_c0_seq1
321bp
FPKM:1.21 TPM:1.12
3729 A_BomaMG_comp13810_c1_seq1
205bp
MFS_transporter_[Skermanella_stibiiresistens]
FPKM:0.97 TPM:0.90
3730 A_BomaMG_comp13811_c0_seq1
1271bp
pyridoxine_5'-phosphate_oxidase_[Bombyx_mori]
GO:0002230 P positive regulation of defense response to virus by host
GO:0004733 F pyridoxamine-phosphate oxidase activity
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0008615 P pyridoxine biosynthetic process
GO:0010181 F FMN binding
GO:0016491 F oxidoreductase activity
GO:0016638 F oxidoreductase activity, acting on the CH-NH2 group of donors
GO:0042823 P pyridoxal phosphate biosynthetic process
GO:0055114 P obsolete oxidation-reduction process
GO:0070062 C extracellular exosome
GO:0098779 P positive regulation of mitophagy in response to mitochondrial depolarization
GO:0098792 P xenophagy
FPKM:14.52 TPM:13.45
3731 A_BomaMG_comp13811_c0_seq2
854bp
pyridoxine_5'-phosphate_oxidase_[Bombyx_mori]
GO:0002230 P positive regulation of defense response to virus by host
GO:0004733 F pyridoxamine-phosphate oxidase activity
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0008615 P pyridoxine biosynthetic process
GO:0010181 F FMN binding
GO:0016491 F oxidoreductase activity
GO:0016638 F oxidoreductase activity, acting on the CH-NH2 group of donors
GO:0042823 P pyridoxal phosphate biosynthetic process
GO:0055114 P obsolete oxidation-reduction process
GO:0070062 C extracellular exosome
GO:0098779 P positive regulation of mitophagy in response to mitochondrial depolarization
GO:0098792 P xenophagy
FPKM:10.03 TPM:9.29
3732 A_BomaMG_comp13813_c0_seq1
658bp
FPKM:21.47 TPM:19.88
3733 A_BomaMG_comp13816_c0_seq1
716bp
FPKM:2.22 TPM:2.05
3734 A_BomaMG_comp13818_c0_seq1
418bp
FPKM:1.29 TPM:1.19
3735 A_BomaMG_comp1381_c0_seq1
403bp
Uncharacterised_protein_[[Clostridium]_sordellii]
FPKM:0.46 TPM:0.43
3736 A_BomaMG_comp138203_c0_seq1
201bp
FPKM:2.11 TPM:1.96
3737 A_BomaMG_comp13820_c0_seq1
2160bp
PREDICTED:_protein_PTCD3_homolog,_mitochondrial_[Amyelois_transitella]
GO:0003674 F molecular_function
GO:0003723 F RNA binding
GO:0005575 C cellular_component
GO:0005739 C mitochondrion
GO:0006417 P regulation of translation
GO:0008150 P biological_process
GO:0019843 F rRNA binding
GO:0032543 P mitochondrial translation
GO:0043024 F ribosomal small subunit binding
FPKM:1.92 TPM:1.78
3738 A_BomaMG_comp13820_c0_seq2
2145bp
PREDICTED:_protein_PTCD3_homolog,_mitochondrial_[Amyelois_transitella]
GO:0003674 F molecular_function
GO:0003723 F RNA binding
GO:0005575 C cellular_component
GO:0005739 C mitochondrion
GO:0006417 P regulation of translation
GO:0008150 P biological_process
GO:0019843 F rRNA binding
GO:0032543 P mitochondrial translation
GO:0043024 F ribosomal small subunit binding
FPKM:9.87 TPM:9.14
3739 A_BomaMG_comp13822_c0_seq1
313bp
hypothetical_protein,_partial_[Enterobacter_asburiae]
FPKM:2.30 TPM:2.13
3740 A_BomaMG_comp13822_c1_seq1
449bp
FPKM:1.39 TPM:1.29
3741 A_BomaMG_comp13827_c0_seq1
767bp
trafficking_protein_particle_complex_6b_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0005515 F protein binding
GO:0005783 C endoplasmic reticulum
GO:0005794 C Golgi apparatus
GO:0005829 C cytosol
GO:0006810 P transport
GO:0016192 P vesicle-mediated transport
GO:0048208 P COPII vesicle coating
FPKM:22.90 TPM:21.21
3742 A_BomaMG_comp13828_c0_seq1
393bp
FPKM:1.76 TPM:1.63
3743 A_BomaMG_comp1382_c0_seq1
201bp
FPKM:4.22 TPM:3.91
3744 A_BomaMG_comp13830_c0_seq1
375bp
FPKM:1.93 TPM:1.78
3745 A_BomaMG_comp13831_c0_seq1
318bp
chemotaxis_protein_[Clostridium_botulinum]
FPKM:0.74 TPM:0.69
3746 A_BomaMG_comp13833_c0_seq1
1521bp
Cycle_like_factor_b_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000977 F RNA polymerase II transcription regulatory region sequence-specific DNA binding
GO:0003053 P circadian regulation of heart rate
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005667 C transcription regulator complex
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007622 P rhythmic behavior
GO:0007623 P circadian rhythm
GO:0008062 P eclosion rhythm
GO:0032922 P circadian regulation of gene expression
GO:0042594 P response to starvation
GO:0045187 P regulation of circadian sleep/wake cycle, sleep
GO:0045475 P locomotor rhythm
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046982 F protein heterodimerization activity
GO:0046983 F protein dimerization activity
GO:0048148 P behavioral response to cocaine
GO:0048511 P rhythmic process
FPKM:1.94 TPM:1.80
3747 A_BomaMG_comp13834_c0_seq1
346bp
PREDICTED:_fidgetin-like_protein_1_[Plutella_xylostella]
GO:0000166 F nucleotide binding
GO:0000287 F magnesium ion binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0007049 P cell cycle
GO:0007067 P mitotic cell cycle
GO:0008568 F microtubule-severing ATPase activity
GO:0010569 P regulation of double-strand break repair via homologous recombination
GO:0016787 F hydrolase activity
GO:0031122 P cytoplasmic microtubule organization
GO:0046034 P ATP metabolic process
GO:0046872 F metal ion binding
GO:0051301 P cell division
FPKM:0.82 TPM:0.76
3748 A_BomaMG_comp13835_c0_seq1
412bp
PREDICTED:_DNA-binding_protein_D-ETS-3_isoform_X2_[Amyelois_transitella]
FPKM:2.21 TPM:2.04
3749 A_BomaMG_comp13836_c0_seq1
1126bp
presenilin_isoform_B_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0002027 P regulation of heart rate
GO:0004175 F endopeptidase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005770 C late endosome
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0005794 C Golgi apparatus
GO:0005887 C integral component of plasma membrane
GO:0005938 C cell cortex
GO:0006508 P proteolysis
GO:0006509 P membrane protein ectodomain proteolysis
GO:0006816 P calcium ion transport
GO:0006915 P apoptotic process
GO:0007010 P cytoskeleton organization
GO:0007219 P Notch signaling pathway
GO:0007220 P Notch receptor processing
GO:0008233 F peptidase activity
GO:0008593 P regulation of Notch signaling pathway
GO:0015677 P copper ion import
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016324 C apical plasma membrane
GO:0016337 P cell-cell adhesion
GO:0016485 P protein processing
GO:0016787 F hydrolase activity
GO:0030018 C Z disc
GO:0042803 F protein homodimerization activity
GO:0042987 P amyloid precursor protein catabolic process
GO:0043025 C neuronal cell body
GO:0043066 P negative regulation of apoptotic process
GO:0046331 P lateral inhibition
GO:0048190 P wing disc dorsal/ventral pattern formation
GO:0048471 C perinuclear region of cytoplasm
GO:0048812 P neuron projection morphogenesis
GO:0050435 P amyloid-beta metabolic process
GO:0055037 C recycling endosome
GO:0070765 C gamma-secretase complex
FPKM:26.30 TPM:24.35
3750 A_BomaMG_comp13838_c0_seq1
446bp
endonuclease_and_reverse_transcriptase-like_protein_[Bombyx_mori]
FPKM:1.03 TPM:0.95
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