SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search Assembled RNA-Seq

previous next from show/39865
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
3481 A_BomaMG_comp135664_c0_seq1
490bp
FPKM:3.63 TPM:3.36
3482 A_BomaMG_comp13567_c0_seq1
278bp
FPKM:0.75 TPM:0.70
3483 A_BomaMG_comp13567_c0_seq2
556bp
PREDICTED:_coiled-coil-helix-coiled-coil-helix_domain-containing_protein_7_isoform_X1_[Amyelois_transitella]
GO:0003674 F molecular_function
GO:0005739 C mitochondrion
GO:0005758 C mitochondrial intermembrane space
GO:0008150 P biological_process
FPKM:28.58 TPM:26.46
3484 A_BomaMG_comp13568_c0_seq1
353bp
FPKM:2.37 TPM:2.19
3485 A_BomaMG_comp135694_c0_seq1
234bp
hypothetical_protein_AGDE_15049_[Angomonas_deanei]
FPKM:2.31 TPM:2.14
3486 A_BomaMG_comp135694_c0_seq2
235bp
ubiquitin-specific_protease,_putative_[Phytophthora_infestans_T30-4]
FPKM:0.00 TPM:0.00
3487 A_BomaMG_comp13569_c0_seq1
869bp
PREDICTED:_Down_syndrome_cell_adhesion_molecule-like_protein_Dscam2_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0007155 P cell adhesion
GO:0007156 P homophilic cell adhesion via plasma membrane adhesion molecules
GO:0007162 P negative regulation of cell adhesion
GO:0007399 P nervous system development
GO:0007416 P synapse assembly
GO:0007626 P locomotory behavior
GO:0010842 P retina layer formation
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030054 C cell junction
GO:0030424 C axon
GO:0030426 C growth cone
GO:0042327 P positive regulation of phosphorylation
GO:0042995 C cell projection
GO:0045202 C synapse
GO:0048813 P dendrite morphogenesis
GO:0048842 P positive regulation of axon extension involved in axon guidance
GO:0060060 P post-embryonic retina morphogenesis in camera-type eye
GO:0060219 P camera-type eye photoreceptor cell differentiation
GO:0070593 P dendrite self-avoidance
FPKM:1.13 TPM:1.05
3488 A_BomaMG_comp13570_c0_seq1
221bp
PREDICTED:_LOW_QUALITY_PROTEIN:_supporter_of_activation_of_yellow_protein_[Bombyx_mori]
FPKM:2.84 TPM:2.63
3489 A_BomaMG_comp13571_c0_seq1
376bp
origin_recognition_complex_subunit_2_[Bombyx_mori]
GO:0000775 C chromosome, centromeric region
GO:0000792 C heterochromatin
GO:0000808 C origin recognition complex
GO:0003677 F DNA binding
GO:0003682 F chromatin binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005664 C nuclear origin of replication recognition complex
GO:0005694 C chromosome
GO:0005723 C alpha-heterochromatin
GO:0006260 P DNA replication
GO:0006261 P DNA-dependent DNA replication
GO:0006270 P DNA replication initiation
GO:0006342 P heterochromatin assembly
GO:0007052 P mitotic spindle organization
GO:0007076 P mitotic chromosome condensation
GO:0007307 P eggshell chorion gene amplification
GO:0008283 P cell population proliferation
GO:0022008 P neurogenesis
GO:0030261 P chromosome condensation
FPKM:2.09 TPM:1.94
3490 A_BomaMG_comp13575_c0_seq1
431bp
transposase_[Ancylostoma_ceylanicum]
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0006310 P DNA recombination
GO:0006313 P transposition, DNA-mediated
GO:0015074 P DNA integration
FPKM:0.95 TPM:0.88
3491 A_BomaMG_comp135772_c0_seq1
1103bp
hypothetical_protein_RR46_03775_[Papilio_xuthus]
FPKM:2.31 TPM:2.14
3492 A_BomaMG_comp13577_c0_seq1
323bp
putative_NADPH_fad_oxidoreductase_[Danaus_plexippus]
GO:0003958 F NADPH-hemoprotein reductase activity
GO:0005506 F iron ion binding
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0008219 P cell death
GO:0010181 F FMN binding
GO:0016226 P iron-sulfur cluster assembly
GO:0016491 F oxidoreductase activity
GO:0016651 F oxidoreductase activity, acting on NAD(P)H
GO:0036245 P cellular response to menadione
GO:0048471 C perinuclear region of cytoplasm
GO:0050660 F flavin adenine dinucleotide binding
GO:0050661 F NADP binding
GO:0055114 P obsolete oxidation-reduction process
FPKM:2.38 TPM:2.21
3493 A_BomaMG_comp13578_c0_seq1
215bp
hypothetical_protein_[Kutzneria_albida]
FPKM:1.58 TPM:1.47
3494 A_BomaMG_comp1357_c0_seq1
509bp
FPKM:1.04 TPM:0.96
3495 A_BomaMG_comp135807_c0_seq1
728bp
PREDICTED:_DNA-binding_protein_Ewg_isoform_X5_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0007417 P central nervous system development
GO:0007517 P muscle organ development
GO:0007560 P imaginal disc morphogenesis
GO:0030177 P positive regulation of Wnt signaling pathway
GO:0045886 P negative regulation of synaptic assembly at neuromuscular junction
FPKM:1.86 TPM:1.72
3496 A_BomaMG_comp13581_c0_seq1
389bp
Uncharacterized_protein_OBRU01_01611,_partial_[Operophtera_brumata]
GO:0005244 F voltage-gated ion channel activity
GO:0005267 F potassium channel activity
GO:0005887 C integral component of plasma membrane
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006813 P potassium ion transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0022841 F potassium ion leak channel activity
GO:0030322 P stabilization of membrane potential
GO:0034765 P regulation of ion transmembrane transport
GO:0071805 P potassium ion transmembrane transport
FPKM:1.96 TPM:1.81
3497 A_BomaMG_comp135821_c0_seq1
532bp
FPKM:2.13 TPM:1.97
3498 A_BomaMG_comp135837_c0_seq1
1198bp
PREDICTED:_microtubule-associated_protein_tau_isoform_X1_[Papilio_machaon]
FPKM:1.73 TPM:1.60
3499 A_BomaMG_comp135838_c0_seq1
775bp
FPKM:1.94 TPM:1.80
3500 A_BomaMG_comp13583_c0_seq1
838bp
gephyrin_[Spodoptera_littoralis]
GO:0000166 F nucleotide binding
GO:0001700 P embryonic development via the syncytial blastoderm
GO:0003824 F catalytic activity
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0006777 P Mo-molybdopterin cofactor biosynthetic process
GO:0008152 P metabolic process
GO:0016740 F transferase activity
GO:0018315 P molybdenum incorporation into molybdenum-molybdopterin complex
GO:0032324 P molybdopterin cofactor biosynthetic process
GO:0046872 F metal ion binding
GO:0061598 F molybdopterin adenylyltransferase activity
GO:0061599 F molybdopterin molybdotransferase activity
FPKM:1.39 TPM:1.29
3501 A_BomaMG_comp13584_c0_seq1
201bp
aspartyl/glutamyl-tRNA_amidotransferase_subunit_A_[Polynucleobacter_necessarius]
FPKM:2.11 TPM:1.96
3502 A_BomaMG_comp13585_c0_seq1
1120bp
PREDICTED:_prominin-like_protein_[Bombyx_mori]
FPKM:5.56 TPM:5.15
3503 A_BomaMG_comp13586_c0_seq1
297bp
FPKM:2.61 TPM:2.41
3504 A_BomaMG_comp13586_c1_seq1
308bp
FPKM:1.59 TPM:1.48
3505 A_BomaMG_comp13587_c0_seq1
381bp
FPKM:1.70 TPM:1.57
3506 A_BomaMG_comp13587_c1_seq1
311bp
[cytidine(C)-cytidine(C)-adenosine_(A)]-adding_enzyme_[Oribacterium_sp._P6A1]
FPKM:0.78 TPM:0.72
3507 A_BomaMG_comp13588_c0_seq1
970bp
PREDICTED:_protein_FAM92A1_isoform_X2_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
FPKM:1.33 TPM:1.23
3508 A_BomaMG_comp13589_c0_seq1
211bp
FPKM:3.42 TPM:3.17
3509 A_BomaMG_comp1358_c0_seq1
327bp
PREDICTED:_ephrin_type-A_receptor_1_isoform_X2_[Anolis_carolinensis]
FPKM:2.09 TPM:1.93
3510 A_BomaMG_comp13590_c0_seq1
226bp
hypothetical_protein_[Polaribacter_sp._Hel1_85]
FPKM:0.65 TPM:0.61
previous next from show/39865

- SilkBase 1999-2023 -