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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
331 A_BomaMG_comp10686_c0_seq1
403bp
FPKM:0.46 TPM:0.43
332 A_BomaMG_comp1068_c0_seq1
480bp
FPKM:1.02 TPM:0.95
333 A_BomaMG_comp106902_c0_seq1
1681bp
FPKM:2.89 TPM:2.67
334 A_BomaMG_comp106938_c0_seq1
2092bp
PREDICTED:_twinkle_protein,_mitochondrial_[Amyelois_transitella]
GO:0000166 F nucleotide binding
GO:0002020 F protease binding
GO:0003678 F DNA helicase activity
GO:0003697 F single-stranded DNA binding
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005739 C mitochondrion
GO:0006260 P DNA replication
GO:0006264 P mitochondrial DNA replication
GO:0006268 P DNA unwinding involved in DNA replication
GO:0006390 P mitochondrial transcription
GO:0016787 F hydrolase activity
GO:0034214 P protein hexamerization
GO:0042645 C mitochondrial nucleoid
GO:0043139 F 5'-3' DNA helicase activity
GO:0051260 P protein homooligomerization
GO:0071333 P cellular response to glucose stimulus
FPKM:2.74 TPM:2.54
335 A_BomaMG_comp10693_c0_seq1
468bp
PREDICTED:_fasciclin-2-like_[Papilio_machaon]
GO:0007155 P cell adhesion
GO:0007275 P multicellular organism development
GO:0007399 P nervous system development
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030154 P cell differentiation
FPKM:1.07 TPM:0.99
336 A_BomaMG_comp10695_c0_seq1
206bp
FPKM:0.95 TPM:0.88
337 A_BomaMG_comp106977_c0_seq1
406bp
FPKM:1.21 TPM:1.12
338 A_BomaMG_comp1069_c0_seq1
258bp
PREDICTED:_iduronate_2-sulfatase_[Bombyx_mori]
FPKM:1.27 TPM:1.17
339 A_BomaMG_comp106_c0_seq1
275bp
PREDICTED:_hemocytin_[Amyelois_transitella]
GO:0007155 P cell adhesion
GO:0030246 F carbohydrate binding
FPKM:1.77 TPM:1.64
340 A_BomaMG_comp107060_c0_seq1
830bp
FPKM:2.77 TPM:2.56
341 A_BomaMG_comp10708_c0_seq1
208bp
FPKM:0.00 TPM:0.00
342 A_BomaMG_comp1070_c0_seq1
401bp
FPKM:1.39 TPM:1.29
343 A_BomaMG_comp10710_c0_seq1
213bp
acyl-CoA_dehydrogenase_[Streptomyces_albus]
FPKM:1.64 TPM:1.52
344 A_BomaMG_comp10712_c0_seq1
211bp
PREDICTED:_heparan_sulfate_glucosamine_3-O-sulfotransferase_2_[Geospiza_fortis]
FPKM:0.85 TPM:0.79
345 A_BomaMG_comp10718_c0_seq1
221bp
PREDICTED:_DNA_mismatch_repair_protein_Mlh1_[Papilio_machaon]
GO:0000289 P nuclear-transcribed mRNA poly(A) tail shortening
GO:0000712 P resolution of meiotic recombination intermediates
GO:0000793 C condensed chromosome
GO:0000794 C condensed nuclear chromosome
GO:0000795 C synaptonemal complex
GO:0001673 C male germ cell nucleus
GO:0002204 P somatic recombination of immunoglobulin genes involved in immune response
GO:0003682 F chromatin binding
GO:0003697 F single-stranded DNA binding
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005694 C chromosome
GO:0005712 C chiasma
GO:0006281 P DNA repair
GO:0006298 P mismatch repair
GO:0006303 P double-strand break repair via nonhomologous end joining
GO:0006974 P cellular response to DNA damage stimulus
GO:0007049 P cell cycle
GO:0007060 P male meiosis chromosome segregation
GO:0007126 P meiotic cell cycle
GO:0007129 P homologous chromosome pairing at meiosis
GO:0007131 P reciprocal meiotic recombination
GO:0007140 P male meiotic nuclear division
GO:0007283 P spermatogenesis
GO:0008630 P intrinsic apoptotic signaling pathway in response to DNA damage
GO:0016020 C membrane
GO:0016321 P female meiosis chromosome segregation
GO:0016446 P somatic hypermutation of immunoglobulin genes
GO:0016447 P somatic recombination of immunoglobulin gene segments
GO:0016887 F ATP hydrolysis activity
GO:0030983 F mismatched DNA binding
GO:0032137 F guanine/thymine mispair binding
GO:0032389 C MutLalpha complex
GO:0032407 F MutSalpha complex binding
GO:0043060 P meiotic metaphase I plate congression
GO:0045132 P meiotic chromosome segregation
GO:0045141 P meiotic telomere clustering
GO:0045143 P homologous chromosome segregation
GO:0045190 P isotype switching
GO:0045950 P negative regulation of mitotic recombination
GO:0048477 P oogenesis
GO:0051257 P meiotic spindle midzone assembly
FPKM:2.84 TPM:2.63
346 A_BomaMG_comp107215_c0_seq1
226bp
FPKM:7.19 TPM:6.66
347 A_BomaMG_comp107243_c0_seq1
227bp
glycosyl_transferase_[Nostoc_punctiforme]
FPKM:1.29 TPM:1.19
348 A_BomaMG_comp107264_c0_seq1
2165bp
PREDICTED:_pseudouridylate_synthase_7_homolog_[Amyelois_transitella]
GO:0001522 P pseudouridine synthesis
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0008033 P tRNA processing
GO:0009451 P RNA modification
GO:0009982 F pseudouridine synthase activity
GO:0016853 F isomerase activity
GO:0019899 F enzyme binding
GO:0044822 F RNA binding
FPKM:2.75 TPM:2.54
349 A_BomaMG_comp10726_c0_seq1
326bp
FPKM:1.63 TPM:1.51
350 A_BomaMG_comp10729_c0_seq1
216bp
putative_pol-like_protein,_partial_[Operophtera_brumata]
FPKM:1.55 TPM:1.44
351 A_BomaMG_comp1072_c0_seq1
218bp
PREDICTED:_dentin_sialophosphoprotein-like_[Bombyx_mori]
FPKM:1.50 TPM:1.39
352 A_BomaMG_comp10730_c0_seq1
260bp
group_II_intron_reverse_transcriptase/maturase_[Burkholderia_sp.]
FPKM:2.07 TPM:1.91
353 A_BomaMG_comp10734_c0_seq1
357bp
FPKM:1.35 TPM:1.25
354 A_BomaMG_comp107360_c0_seq1
252bp
FPKM:2.27 TPM:2.10
355 A_BomaMG_comp1073_c0_seq1
236bp
PREDICTED:_DNA_polymerase_alpha_catalytic_subunit_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0001882 F nucleoside binding
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003824 F catalytic activity
GO:0003887 F DNA-directed DNA polymerase activity
GO:0004518 F nuclease activity
GO:0004527 F exonuclease activity
GO:0005634 C nucleus
GO:0005658 C alpha DNA polymerase:primase complex
GO:0006260 P DNA replication
GO:0006270 P DNA replication initiation
GO:0006271 P DNA strand elongation involved in DNA replication
GO:0006272 P leading strand elongation
GO:0006273 P lagging strand elongation
GO:0006281 P DNA repair
GO:0006303 P double-strand break repair via nonhomologous end joining
GO:0006974 P cellular response to DNA damage stimulus
GO:0008152 P metabolic process
GO:0008296 F 3'-5'-exodeoxyribonuclease activity
GO:0008408 F 3'-5' exonuclease activity
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0022008 P neurogenesis
GO:0046872 F metal ion binding
GO:0051536 F iron-sulfur cluster binding
GO:0051539 F 4 iron, 4 sulfur cluster binding
GO:0071897 P DNA biosynthetic process
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
FPKM:1.68 TPM:1.56
356 A_BomaMG_comp1073_c1_seq1
308bp
PREDICTED:_DNA_polymerase_alpha_catalytic_subunit_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0001882 F nucleoside binding
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003824 F catalytic activity
GO:0003887 F DNA-directed DNA polymerase activity
GO:0004518 F nuclease activity
GO:0004527 F exonuclease activity
GO:0005634 C nucleus
GO:0005658 C alpha DNA polymerase:primase complex
GO:0006260 P DNA replication
GO:0006270 P DNA replication initiation
GO:0006271 P DNA strand elongation involved in DNA replication
GO:0006272 P leading strand elongation
GO:0006273 P lagging strand elongation
GO:0006281 P DNA repair
GO:0006303 P double-strand break repair via nonhomologous end joining
GO:0006974 P cellular response to DNA damage stimulus
GO:0008152 P metabolic process
GO:0008296 F 3'-5'-exodeoxyribonuclease activity
GO:0008408 F 3'-5' exonuclease activity
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0022008 P neurogenesis
GO:0046872 F metal ion binding
GO:0051536 F iron-sulfur cluster binding
GO:0051539 F 4 iron, 4 sulfur cluster binding
GO:0071897 P DNA biosynthetic process
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
FPKM:1.33 TPM:1.23
357 A_BomaMG_comp10747_c0_seq1
216bp
FPKM:1.55 TPM:1.44
358 A_BomaMG_comp1074_c0_seq1
202bp
FPKM:3.10 TPM:2.87
359 A_BomaMG_comp10752_c0_seq1
241bp
FPKM:0.52 TPM:0.48
360 A_BomaMG_comp107537_c0_seq1
1053bp
PREDICTED:_uncharacterized_protein_LOC106137937_[Amyelois_transitella]
FPKM:0.00 TPM:0.00
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