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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
3181 A_BomaMG_comp1329_c0_seq1
302bp
hypothetical_protein_KGM_10034_[Danaus_plexippus]
FPKM:1.95 TPM:1.80
3182 A_BomaMG_comp13300_c0_seq1
367bp
PREDICTED:_protein_sel-1_homolog_2_isoform_X1_[Bombyx_mori]
FPKM:9.49 TPM:8.79
3183 A_BomaMG_comp133016_c0_seq1
336bp
MULTISPECIES:_hypothetical_protein_[Clostridium]
FPKM:2.84 TPM:2.63
3184 A_BomaMG_comp13301_c0_seq1
591bp
PREDICTED:_cullin-2-like_[Plutella_xylostella]
GO:0005515 F protein binding
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0016567 P protein ubiquitination
GO:0030163 P protein catabolic process
GO:0030891 C VCB complex
GO:0031461 C cullin-RING ubiquitin ligase complex
GO:0031462 C Cul2-RING ubiquitin ligase complex
GO:0031625 F ubiquitin protein ligase binding
GO:0032403 F protein-containing complex binding
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0061630 F ubiquitin protein ligase activity
FPKM:0.00 TPM:0.00
3185 A_BomaMG_comp13301_c0_seq2
695bp
PREDICTED:_cullin-2-like_[Plutella_xylostella]
GO:0005515 F protein binding
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0016567 P protein ubiquitination
GO:0030163 P protein catabolic process
GO:0030891 C VCB complex
GO:0031461 C cullin-RING ubiquitin ligase complex
GO:0031462 C Cul2-RING ubiquitin ligase complex
GO:0031625 F ubiquitin protein ligase binding
GO:0032403 F protein-containing complex binding
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0061630 F ubiquitin protein ligase activity
FPKM:5.08 TPM:4.70
3186 A_BomaMG_comp13302_c0_seq1
790bp
FPKM:3.95 TPM:3.66
3187 A_BomaMG_comp13302_c1_seq1
387bp
hypothetical_protein_ZOSMA_23G00410_[Zostera_marina]
FPKM:3.96 TPM:3.66
3188 A_BomaMG_comp13303_c0_seq1
445bp
PREDICTED:_afadin_[Bombyx_mori]
FPKM:7.33 TPM:6.79
3189 A_BomaMG_comp13305_c0_seq1
1176bp
Protein_Smaug_[Papilio_machaon]
GO:0003723 F RNA binding
GO:0005737 C cytoplasm
GO:0006355 P regulation of transcription, DNA-templated
GO:0006417 P regulation of translation
GO:0030054 C cell junction
GO:0030425 C dendrite
GO:0042995 C cell projection
GO:0043005 C neuron projection
GO:0045202 C synapse
FPKM:1.06 TPM:0.98
3190 A_BomaMG_comp13305_c0_seq2
1953bp
PREDICTED:_protein_Smaug_[Amyelois_transitella]
GO:0003723 F RNA binding
GO:0005737 C cytoplasm
GO:0006355 P regulation of transcription, DNA-templated
GO:0006417 P regulation of translation
GO:0007275 P multicellular organism development
GO:0017148 P negative regulation of translation
GO:0030371 F translation repressor activity
FPKM:6.05 TPM:5.60
3191 A_BomaMG_comp13306_c0_seq1
1144bp
iron-sulfur_cluster_assembly_scaffold_protein_IscU_[Papilio_polytes]
GO:0005506 F iron ion binding
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005759 C mitochondrial matrix
GO:0005829 C cytosol
GO:0006879 P cellular iron ion homeostasis
GO:0008198 F ferrous iron binding
GO:0016226 P iron-sulfur cluster assembly
GO:0032947 F molecular adaptor activity
GO:0036455 F iron-sulfur transferase activity
GO:0044571 P [2Fe-2S] cluster assembly
GO:0046872 F metal ion binding
GO:0051536 F iron-sulfur cluster binding
GO:0051537 F 2 iron, 2 sulfur cluster binding
GO:0051539 F 4 iron, 4 sulfur cluster binding
GO:0097428 P protein maturation by iron-sulfur cluster transfer
FPKM:17.54 TPM:16.25
3192 A_BomaMG_comp133075_c0_seq1
487bp
twitching_motility_protein_PilT_[Anabaena_sp._wa102]
FPKM:1.78 TPM:1.64
3193 A_BomaMG_comp13307_c0_seq1
206bp
olfactory_receptor_[Bombyx_mori]
FPKM:6.63 TPM:6.14
3194 A_BomaMG_comp13309_c0_seq1
435bp
FPKM:5.35 TPM:4.95
3195 A_BomaMG_comp13309_c0_seq2
276bp
FPKM:0.00 TPM:0.00
3196 A_BomaMG_comp133128_c0_seq1
730bp
PREDICTED:_ATP-binding_cassette_sub-family_A_member_3-like_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005215 F transporter activity
GO:0005524 F ATP binding
GO:0006810 P transport
GO:0006869 P lipid transport
GO:0008152 P metabolic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016887 F ATP hydrolysis activity
GO:0030587 P sorocarp development
GO:0031288 P sorocarp morphogenesis
GO:0042626 F ATPase-coupled transmembrane transporter activity
GO:0043231 C intracellular membrane-bounded organelle
GO:0055085 P transmembrane transport
FPKM:3.15 TPM:2.92
3197 A_BomaMG_comp13313_c0_seq1
2143bp
PREDICTED:_vacuolar_protein_sorting-associated_protein_33A-like_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005764 C lysosome
GO:0005765 C lysosomal membrane
GO:0005768 C endosome
GO:0005769 C early endosome
GO:0005776 C autophagosome
GO:0006810 P transport
GO:0006904 P vesicle docking involved in exocytosis
GO:0008150 P biological_process
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016023 C cytoplasmic vesicle
GO:0016192 P vesicle-mediated transport
GO:0030136 C clathrin-coated vesicle
GO:0031410 C cytoplasmic vesicle
GO:0031902 C late endosome membrane
GO:0032403 F protein-containing complex binding
FPKM:5.36 TPM:4.97
3198 A_BomaMG_comp13314_c0_seq1
367bp
FPKM:10.59 TPM:9.80
3199 A_BomaMG_comp133155_c0_seq1
291bp
PREDICTED:_vacuolar_protein_sorting-associated_protein_13D_[Bombyx_mori]
GO:0005622 C intracellular anatomical structure
GO:0006623 P protein targeting to vacuole
GO:0019898 C extrinsic component of membrane
GO:0045053 P protein retention in Golgi apparatus
GO:0070062 C extracellular exosome
FPKM:5.79 TPM:5.36
3200 A_BomaMG_comp13315_c0_seq1
980bp
FPKM:6.02 TPM:5.57
3201 A_BomaMG_comp13316_c0_seq1
2556bp
PREDICTED:_transducin_beta-like_protein_3_isoform_X1_[Bombyx_mori]
GO:0000462 P maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0006364 P rRNA processing
GO:0030515 F snoRNA binding
GO:0032040 C small-subunit processome
GO:0034388 C Pwp2p-containing subcomplex of 90S preribosome
GO:0044822 F RNA binding
FPKM:6.48 TPM:6.00
3202 A_BomaMG_comp13317_c0_seq1
973bp
6-pyruvoyltetrahydropterin_synthase_[Bombyx_mori]
GO:0003874 F 6-pyruvoyltetrahydropterin synthase activity
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005829 C cytosol
GO:0006520 P cellular amino acid metabolic process
GO:0006729 P tetrahydrobiopterin biosynthetic process
GO:0007417 P central nervous system development
GO:0016829 F lyase activity
GO:0042802 F identical protein binding
GO:0042803 F protein homodimerization activity
GO:0046872 F metal ion binding
GO:0050999 P regulation of nitric-oxide synthase activity
FPKM:5.26 TPM:4.87
3203 A_BomaMG_comp13318_c0_seq1
990bp
PREDICTED:_ankyrin_repeat_domain-containing_protein_17-like_[Bombyx_mori]
GO:0000785 C chromatin
GO:0001955 P blood vessel maturation
GO:0002376 P immune system process
GO:0003676 F nucleic acid binding
GO:0003682 F chromatin binding
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006275 P regulation of DNA replication
GO:0016020 C membrane
GO:0016032 P viral process
GO:0042742 P defense response to bacterium
GO:0043123 P positive regulation of I-kappaB kinase/NF-kappaB signaling
GO:0044822 F RNA binding
GO:0045087 P innate immune response
GO:0045787 P positive regulation of cell cycle
GO:0051151 P negative regulation of smooth muscle cell differentiation
GO:1900087 P positive regulation of G1/S transition of mitotic cell cycle
GO:1900245 P positive regulation of MDA-5 signaling pathway
GO:1900246 P positive regulation of RIG-I signaling pathway
FPKM:4.72 TPM:4.37
3204 A_BomaMG_comp13318_c0_seq2
866bp
PREDICTED:_ankyrin_repeat_domain-containing_protein_17-like_[Bombyx_mori]
GO:0000785 C chromatin
GO:0001955 P blood vessel maturation
GO:0002376 P immune system process
GO:0003676 F nucleic acid binding
GO:0003682 F chromatin binding
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006275 P regulation of DNA replication
GO:0016020 C membrane
GO:0016032 P viral process
GO:0042742 P defense response to bacterium
GO:0043123 P positive regulation of I-kappaB kinase/NF-kappaB signaling
GO:0044822 F RNA binding
GO:0045087 P innate immune response
GO:0045787 P positive regulation of cell cycle
GO:0051151 P negative regulation of smooth muscle cell differentiation
GO:1900087 P positive regulation of G1/S transition of mitotic cell cycle
GO:1900245 P positive regulation of MDA-5 signaling pathway
GO:1900246 P positive regulation of RIG-I signaling pathway
FPKM:0.61 TPM:0.56
3205 A_BomaMG_comp13319_c0_seq1
201bp
FPKM:6.99 TPM:6.48
3206 A_BomaMG_comp1331_c0_seq1
588bp
PREDICTED:_1-acyl-sn-glycerol-3-phosphate_acyltransferase_alpha-like_[Amyelois_transitella]
GO:0001819 P positive regulation of cytokine production
GO:0003841 F 1-acylglycerol-3-phosphate O-acyltransferase activity
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0006629 P lipid metabolic process
GO:0006654 P phosphatidic acid biosynthetic process
GO:0008152 P metabolic process
GO:0008654 P phospholipid biosynthetic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016024 P CDP-diacylglycerol biosynthetic process
GO:0016740 F transferase activity
GO:0016746 F acyltransferase activity
GO:0046474 P glycerophospholipid biosynthetic process
FPKM:1.08 TPM:1.00
3207 A_BomaMG_comp1331_c1_seq1
345bp
PREDICTED:_1-acyl-sn-glycerol-3-phosphate_acyltransferase_alpha-like_[Amyelois_transitella]
GO:0001819 P positive regulation of cytokine production
GO:0003841 F 1-acylglycerol-3-phosphate O-acyltransferase activity
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0006629 P lipid metabolic process
GO:0006654 P phosphatidic acid biosynthetic process
GO:0008152 P metabolic process
GO:0008544 P epidermis development
GO:0008654 P phospholipid biosynthetic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016024 P CDP-diacylglycerol biosynthetic process
GO:0016740 F transferase activity
GO:0016746 F acyltransferase activity
GO:0036276 P response to antidepressant
GO:0046474 P glycerophospholipid biosynthetic process
FPKM:1.24 TPM:1.15
3208 A_BomaMG_comp13321_c0_seq1
1376bp
PREDICTED:_wee1-like_protein_kinase_[Amyelois_transitella]
FPKM:5.38 TPM:4.98
3209 A_BomaMG_comp13324_c0_seq1
262bp
FPKM:0.81 TPM:0.75
3210 A_BomaMG_comp133250_c0_seq1
2066bp
PREDICTED:_uncharacterized_protein_LOC101745004_[Bombyx_mori]
GO:0000978 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008270 F zinc ion binding
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
FPKM:1.78 TPM:1.65
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