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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
3151 A_BomaMG_comp13274_c0_seq1
1467bp
PREDICTED:_general_transcription_factor_3C_polypeptide_5_[Papilio_xuthus]
GO:0000127 C transcription factor TFIIIC complex
GO:0003674 F molecular_function
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0035914 P skeletal muscle cell differentiation
FPKM:0.17 TPM:0.16
3152 A_BomaMG_comp13274_c0_seq2
1392bp
PREDICTED:_general_transcription_factor_3C_polypeptide_5_[Papilio_xuthus]
GO:0000127 C transcription factor TFIIIC complex
GO:0003674 F molecular_function
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0035914 P skeletal muscle cell differentiation
FPKM:0.00 TPM:0.00
3153 A_BomaMG_comp13274_c0_seq3
1468bp
PREDICTED:_general_transcription_factor_3C_polypeptide_5_[Papilio_xuthus]
GO:0000127 C transcription factor TFIIIC complex
GO:0003674 F molecular_function
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0035914 P skeletal muscle cell differentiation
FPKM:0.00 TPM:0.00
3154 A_BomaMG_comp13274_c0_seq4
1391bp
PREDICTED:_general_transcription_factor_3C_polypeptide_5_[Papilio_xuthus]
GO:0000127 C transcription factor TFIIIC complex
GO:0003674 F molecular_function
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0035914 P skeletal muscle cell differentiation
FPKM:6.36 TPM:5.89
3155 A_BomaMG_comp13275_c0_seq1
916bp
PREDICTED:_protein_kibra_isoform_X1_[Bombyx_mori]
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0016020 C membrane
GO:0016324 C apical plasma membrane
GO:0035330 P regulation of hippo signaling
FPKM:4.70 TPM:4.35
3156 A_BomaMG_comp13276_c0_seq1
2795bp
PREDICTED:_LOW_QUALITY_PROTEIN:_probable_phospholipid-transporting_ATPase_VD_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000287 F magnesium ion binding
GO:0004012 F ATPase-coupled intramembrane lipid transporter activity
GO:0005524 F ATP binding
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0006869 P lipid transport
GO:0008152 P metabolic process
GO:0015914 P phospholipid transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016787 F hydrolase activity
GO:0045332 P phospholipid translocation
GO:0046872 F metal ion binding
FPKM:4.97 TPM:4.60
3157 A_BomaMG_comp132777_c0_seq1
734bp
PREDICTED:_ankyrin_repeat_domain-containing_protein_13B-like,_partial_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005768 C endosome
GO:0005769 C early endosome
GO:0005770 C late endosome
GO:0005886 C plasma membrane
GO:0008150 P biological_process
GO:0016020 C membrane
GO:0043231 C intracellular membrane-bounded organelle
FPKM:3.49 TPM:3.24
3158 A_BomaMG_comp13277_c0_seq1
752bp
PREDICTED:_mediator_of_RNA_polymerase_II_transcription_subunit_20_[Papilio_machaon]
GO:0001104 F transcription coregulator activity
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0016592 C mediator complex
FPKM:5.94 TPM:5.50
3159 A_BomaMG_comp132796_c0_seq1
359bp
FPKM:2.48 TPM:2.30
3160 A_BomaMG_comp13279_c0_seq1
1713bp
PREDICTED:_LOW_QUALITY_PROTEIN:_glutamyl-tRNA(Gln)_amidotransferase_subunit_A,_mitochondrial_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005524 F ATP binding
GO:0005739 C mitochondrion
GO:0006412 P translation
GO:0016874 F ligase activity
GO:0016884 F carbon-nitrogen ligase activity, with glutamine as amido-N-donor
GO:0030956 C glutamyl-tRNA(Gln) amidotransferase complex
GO:0032543 P mitochondrial translation
GO:0050567 F glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity
GO:0070681 P glutaminyl-tRNAGln biosynthesis via transamidation
FPKM:6.27 TPM:5.81
3161 A_BomaMG_comp13282_c0_seq1
1106bp
FPKM:5.56 TPM:5.15
3162 A_BomaMG_comp13283_c0_seq1
2645bp
PREDICTED:_serine/threonine-protein_phosphatase_4_catalytic_subunit_[Papilio_polytes]
GO:0004721 F phosphoprotein phosphatase activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005815 C microtubule organizing center
GO:0005856 C cytoskeleton
GO:0006470 P protein dephosphorylation
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
FPKM:5.74 TPM:5.31
3163 A_BomaMG_comp13285_c0_seq1
1050bp
FPKM:6.16 TPM:5.70
3164 A_BomaMG_comp132864_c0_seq1
300bp
FPKM:1.70 TPM:1.57
3165 A_BomaMG_comp132886_c0_seq1
1010bp
PREDICTED:_protein_asunder-like_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0007049 P cell cycle
GO:0007067 P mitotic cell cycle
GO:0007275 P multicellular organism development
GO:0007283 P spermatogenesis
GO:0007346 P regulation of mitotic cell cycle
GO:0030154 P cell differentiation
GO:0030317 P flagellated sperm motility
GO:0048471 C perinuclear region of cytoplasm
GO:0051301 P cell division
GO:0051321 P meiotic cell cycle
GO:0080154 P regulation of fertilization
FPKM:2.25 TPM:2.08
3166 A_BomaMG_comp13288_c0_seq1
385bp
FPKM:5.33 TPM:4.93
3167 A_BomaMG_comp132895_c0_seq1
213bp
unknown_protein,_partial_[Papilio_xuthus]
FPKM:8.22 TPM:7.61
3168 A_BomaMG_comp13289_c0_seq1
4152bp
PREDICTED:_uncharacterized_protein_LOC106129437_[Amyelois_transitella]
FPKM:0.39 TPM:0.36
3169 A_BomaMG_comp13289_c0_seq2
4331bp
PREDICTED:_uncharacterized_protein_LOC106129437_[Amyelois_transitella]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000775 C chromosome, centromeric region
GO:0001741 C XY body
GO:0001934 P positive regulation of protein phosphorylation
GO:0002039 F p53 binding
GO:0003714 F transcription corepressor activity
GO:0005057 F obsolete signal transducer activity, downstream of receptor
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005694 C chromosome
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005874 C microtubule
GO:0005938 C cell cortex
GO:0006334 P nucleosome assembly
GO:0006338 P chromatin remodeling
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006915 P apoptotic process
GO:0007257 P obsolete activation of JUN kinase activity
GO:0008134 F transcription factor binding
GO:0008625 P extrinsic apoptotic signaling pathway via death domain receptors
GO:0010038 P response to metal ion
GO:0010832 P negative regulation of myotube differentiation
GO:0016032 P viral process
GO:0016568 P chromatin organization
GO:0016605 C PML body
GO:0019899 F enzyme binding
GO:0019901 F protein kinase binding
GO:0030295 F protein kinase activator activity
GO:0030521 P androgen receptor signaling pathway
GO:0030578 P PML body organization
GO:0031072 F heat shock protein binding
GO:0031396 P regulation of protein ubiquitination
GO:0031625 F ubiquitin protein ligase binding
GO:0033129 P positive regulation of histone phosphorylation
GO:0042393 F histone binding
GO:0042803 F protein homodimerization activity
GO:0043005 C neuron projection
GO:0043065 P positive regulation of apoptotic process
GO:0044297 C cell body
GO:0045860 P positive regulation of protein kinase activity
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0047485 F protein N-terminus binding
GO:0050681 F androgen receptor binding
GO:0070603 C SWI/SNF superfamily-type complex
GO:0071356 P cellular response to tumor necrosis factor
GO:0071454 P cellular response to anoxia
GO:1901216 P positive regulation of neuron death
FPKM:4.67 TPM:4.32
3170 A_BomaMG_comp132915_c0_seq1
506bp
longer_ecdysteroid-phosphate_phosphatase_[Bombyx_mori]
GO:0005829 C cytosol
GO:0016311 P dephosphorylation
GO:0016791 F phosphatase activity
FPKM:2.30 TPM:2.13
3171 A_BomaMG_comp13291_c0_seq1
209bp
FPKM:8.90 TPM:8.24
3172 A_BomaMG_comp13294_c0_seq1
2962bp
PREDICTED:_dol-P-Man:Man(7)GlcNAc(2)-PP-Dol_alpha-1,6-mannosyltransferase_[Papilio_polytes]
GO:0000009 F alpha-1,6-mannosyltransferase activity
GO:0000030 F mannosyltransferase activity
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0006486 P protein glycosylation
GO:0006487 P protein N-linked glycosylation
GO:0006488 P dolichol-linked oligosaccharide biosynthetic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016740 F transferase activity
GO:0016757 F glycosyltransferase activity
GO:0052917 F dolichyl-P-Man:Man(7)GlcNAc(2)-PP-dolichol alpha-1,6-mannosyltransferase
GO:0097502 P mannosylation
FPKM:4.94 TPM:4.57
3173 A_BomaMG_comp13295_c0_seq1
578bp
PREDICTED:_uncharacterized_protein_LOC101739826_[Bombyx_mori]
FPKM:6.84 TPM:6.33
3174 A_BomaMG_comp13297_c0_seq1
2337bp
PREDICTED:_peroxisome_biogenesis_protein_6_[Amyelois_transitella]
GO:0000166 F nucleotide binding
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0006635 P fatty acid beta-oxidation
GO:0006810 P transport
GO:0007031 P peroxisome organization
GO:0015031 P protein transport
GO:0016558 P protein import into peroxisome matrix
FPKM:6.32 TPM:5.86
3175 A_BomaMG_comp132981_c0_seq1
2627bp
PREDICTED:_RNA_polymerase_II-associated_protein_1_isoform_X2_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0003899 F DNA-directed 5'-3' RNA polymerase activity
GO:0005634 C nucleus
GO:0006366 P transcription by RNA polymerase II
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
FPKM:1.71 TPM:1.59
3176 A_BomaMG_comp132985_c0_seq1
236bp
PREDICTED:_protein_FAM214A_isoform_X1_[Amyelois_transitella]
GO:0005515 F protein binding
FPKM:8.98 TPM:8.31
3177 A_BomaMG_comp13298_c0_seq1
742bp
FPKM:2.84 TPM:2.63
3178 A_BomaMG_comp132994_c0_seq1
1723bp
PREDICTED:_cytochrome_P450_4C1-like_[Bombyx_mori]
GO:0004497 F monooxygenase activity
GO:0005506 F iron ion binding
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0016020 C membrane
GO:0016491 F oxidoreductase activity
GO:0016705 F oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0020037 F heme binding
GO:0031090 C organelle membrane
GO:0043231 C intracellular membrane-bounded organelle
GO:0046872 F metal ion binding
GO:0055114 P obsolete oxidation-reduction process
GO:0070330 F aromatase activity
FPKM:2.26 TPM:2.09
3179 A_BomaMG_comp132996_c0_seq1
1229bp
PREDICTED:_glucoside_xylosyltransferase_1_[Bombyx_mori]
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016266 P O-glycan processing
GO:0016740 F transferase activity
GO:0016757 F glycosyltransferase activity
GO:0016763 F pentosyltransferase activity
GO:0035252 F UDP-xylosyltransferase activity
FPKM:2.20 TPM:2.03
3180 A_BomaMG_comp13299_c0_seq1
1176bp
FPKM:6.06 TPM:5.61
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