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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
3091 A_BomaMG_comp132274_c0_seq1
606bp
PREDICTED:_uncharacterized_protein_LOC101743520_[Bombyx_mori]
FPKM:2.55 TPM:2.37
3092 A_BomaMG_comp132285_c0_seq1
1120bp
PREDICTED:_collagen_alpha-2(IV)_chain_[Bombyx_mori]
GO:0005581 C collagen trimer
GO:0019012 C virion component
FPKM:1.69 TPM:1.57
3093 A_BomaMG_comp132287_c0_seq1
421bp
PREDICTED:_rap1_GTPase-activating_protein_1-like_isoform_X1_[Bombyx_mori]
FPKM:2.55 TPM:2.36
3094 A_BomaMG_comp13229_c0_seq1
1063bp
PREDICTED:_pre-mRNA-splicing_factor_SPF27_[Papilio_polytes]
GO:0000398 P mRNA splicing, via spliceosome
GO:0000974 C Prp19 complex
GO:0003674 F molecular_function
GO:0005634 C nucleus
GO:0005662 C DNA replication factor A complex
GO:0005681 C spliceosomal complex
GO:0005730 C nucleolus
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0030054 C cell junction
GO:0071011 C precatalytic spliceosome
GO:0071012 C catalytic step 1 spliceosome
GO:0071013 C catalytic step 2 spliceosome
FPKM:6.72 TPM:6.22
3095 A_BomaMG_comp13230_c0_seq1
1413bp
PREDICTED:_nuclear_receptor_corepressor_1_[Bombyx_mori]
GO:0000118 C histone deacetylase complex
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000790 C chromatin
GO:0001102 F RNA polymerase II-specific DNA-binding transcription factor binding
GO:0002155 P regulation of thyroid hormone mediated signaling pathway
GO:0002361 P CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0003714 F transcription corepressor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005667 C transcription regulator complex
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005876 C spindle microtubule
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0007623 P circadian rhythm
GO:0014067 P negative regulation of phosphatidylinositol 3-kinase signaling
GO:0016020 C membrane
GO:0016568 P chromatin organization
GO:0016580 C Sin3 complex
GO:0016922 F nuclear receptor binding
GO:0017053 C transcription repressor complex
GO:0019904 F protein domain specific binding
GO:0021794 P thalamus development
GO:0031065 P positive regulation of histone deacetylation
GO:0032922 P circadian regulation of gene expression
GO:0035033 F histone deacetylase regulator activity
GO:0035257 F nuclear receptor binding
GO:0040014 P regulation of multicellular organism growth
GO:0042632 P cholesterol homeostasis
GO:0042826 F histone deacetylase binding
GO:0042974 F retinoic acid receptor binding
GO:0043565 F sequence-specific DNA binding
GO:0044212 F transcription cis-regulatory region binding
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0046329 P negative regulation of JNK cascade
GO:0046965 F retinoid X receptor binding
GO:0046966 F thyroid hormone receptor binding
GO:0051225 P spindle assembly
GO:0060318 P definitive erythrocyte differentiation
GO:0072362 P obsolete regulation of glycolytic process by negative regulation of transcription from RNA polymerase II promoter
GO:0072368 P obsolete regulation of lipid transport by negative regulation of transcription from RNA polymerase II promoter
GO:1903799 P negative regulation of production of miRNAs involved in gene silencing by miRNA
GO:1904017 P cellular response to Thyroglobulin triiodothyronine
FPKM:5.52 TPM:5.11
3096 A_BomaMG_comp132310_c0_seq1
997bp
PREDICTED:_sodium/hydrogen_exchanger_6_[Bombyx_mori]
FPKM:1.78 TPM:1.65
3097 A_BomaMG_comp132311_c0_seq1
865bp
PREDICTED:_WD_repeat-containing_protein_3-like_[Bombyx_mori]
GO:0000462 P maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0006364 P rRNA processing
GO:0030515 F snoRNA binding
GO:0031965 C nuclear membrane
GO:0032040 C small-subunit processome
GO:0034388 C Pwp2p-containing subcomplex of 90S preribosome
GO:0044822 F RNA binding
FPKM:2.33 TPM:2.16
3098 A_BomaMG_comp13231_c0_seq1
486bp
hypothetical_protein_M413DRAFT_370568_[Hebeloma_cylindrosporum_h7]
FPKM:4.23 TPM:3.92
3099 A_BomaMG_comp13231_c1_seq1
1215bp
FPKM:5.30 TPM:4.91
3100 A_BomaMG_comp132336_c0_seq1
2167bp
PREDICTED:_serine_protease_easter-like_[Bombyx_mori]
GO:0004252 F serine-type endopeptidase activity
GO:0005576 C extracellular region
GO:0006508 P proteolysis
GO:0006952 P defense response
GO:0007275 P multicellular organism development
GO:0007311 P maternal specification of dorsal/ventral axis, oocyte, germ-line encoded
GO:0008063 P Toll signaling pathway
GO:0008233 F peptidase activity
GO:0008236 F serine-type peptidase activity
GO:0009950 P dorsal/ventral axis specification
GO:0016787 F hydrolase activity
GO:0031638 P zymogen activation
FPKM:2.13 TPM:1.97
3101 A_BomaMG_comp132340_c0_seq1
759bp
PREDICTED:_uncharacterized_protein_LOC101741169_isoform_X3_[Bombyx_mori]
GO:0004842 F ubiquitin-protein transferase activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0042787 P ubiquitin-dependent protein catabolic process
FPKM:1.64 TPM:1.52
3102 A_BomaMG_comp132346_c0_seq1
553bp
FPKM:3.65 TPM:3.38
3103 A_BomaMG_comp132353_c0_seq1
1187bp
Uncharacterized_protein_OBRU01_10688_[Operophtera_brumata]
GO:0003674 F molecular_function
GO:0005680 C anaphase-promoting complex
GO:0007049 P cell cycle
GO:0007067 P mitotic cell cycle
GO:0051301 P cell division
GO:0090266 P regulation of mitotic cell cycle spindle assembly checkpoint
FPKM:2.05 TPM:1.90
3104 A_BomaMG_comp132356_c0_seq1
474bp
PREDICTED:_tRNA:m(4)X_modification_enzyme_TRM13_homolog_isoform_X2_[Bombyx_mori]
GO:0008033 P tRNA processing
GO:0008168 F methyltransferase activity
GO:0008175 F tRNA methyltransferase activity
GO:0016740 F transferase activity
GO:0030488 P tRNA methylation
GO:0032259 P methylation
GO:0046872 F metal ion binding
FPKM:2.78 TPM:2.58
3105 A_BomaMG_comp13235_c0_seq1
1662bp
PREDICTED:_E3_ubiquitin-protein_ligase_RBBP6_[Bombyx_mori]
FPKM:5.86 TPM:5.42
3106 A_BomaMG_comp13236_c0_seq1
720bp
PREDICTED:_flightin_isoform_X1_[Bombyx_mori]
GO:0005863 C striated muscle myosin thick filament
GO:0007527 P adult somatic muscle development
GO:0008307 F structural constituent of muscle
GO:0014703 P oscillatory muscle contraction
GO:0030241 P skeletal muscle myosin thick filament assembly
GO:0031672 C A band
GO:0043292 C contractile fiber
GO:0045214 P sarcomere organization
GO:0071688 P striated muscle myosin thick filament assembly
GO:0097493 F structural molecule activity conferring elasticity
FPKM:2.53 TPM:2.35
3107 A_BomaMG_comp13236_c0_seq2
598bp
flightin_[Bombyx_mandarina]
GO:0005863 C striated muscle myosin thick filament
GO:0007527 P adult somatic muscle development
GO:0008307 F structural constituent of muscle
GO:0014703 P oscillatory muscle contraction
GO:0030241 P skeletal muscle myosin thick filament assembly
GO:0031672 C A band
GO:0043292 C contractile fiber
GO:0045214 P sarcomere organization
GO:0071688 P striated muscle myosin thick filament assembly
GO:0097493 F structural molecule activity conferring elasticity
FPKM:7.38 TPM:6.83
3108 A_BomaMG_comp13237_c0_seq1
1629bp
PREDICTED:_proton-coupled_amino_acid_transporter_4-like_isoform_X2_[Bombyx_mori]
GO:0006810 P transport
GO:0006865 P amino acid transport
GO:0015293 F symporter activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0055085 P transmembrane transport
FPKM:6.96 TPM:6.45
3109 A_BomaMG_comp13238_c0_seq1
3403bp
PREDICTED:_U5_small_nuclear_ribonucleoprotein_40_kDa_protein_isoform_X2_[Amyelois_transitella]
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005682 C U5 snRNP
GO:0005737 C cytoplasm
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0044822 F RNA binding
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
FPKM:4.30 TPM:3.98
3110 A_BomaMG_comp13238_c0_seq2
2494bp
PREDICTED:_nucleoporin-like_protein_2_[Papilio_machaon]
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005682 C U5 snRNP
GO:0005737 C cytoplasm
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0044822 F RNA binding
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
FPKM:0.42 TPM:0.38
3111 A_BomaMG_comp132390_c0_seq1
592bp
PREDICTED:_crossover_junction_endonuclease_EME1-like_[Plutella_xylostella]
GO:0000790 C chromatin
GO:0003677 F DNA binding
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0005634 C nucleus
GO:0005720 C heterochromatin
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006281 P DNA repair
GO:0006310 P DNA recombination
GO:0006974 P cellular response to DNA damage stimulus
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
GO:0072429 P response to intra-S DNA damage checkpoint signaling
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
FPKM:3.05 TPM:2.83
3112 A_BomaMG_comp13239_c0_seq1
212bp
thiol:disulfide_interchange_protein_[Bacteroidetes_bacterium_OLB10]
FPKM:2.52 TPM:2.33
3113 A_BomaMG_comp13240_c0_seq1
1264bp
PREDICTED:_uncharacterized_protein_LOC106123303_[Papilio_xuthus]
FPKM:6.47 TPM:5.99
3114 A_BomaMG_comp13243_c0_seq1
286bp
FPKM:5.74 TPM:5.31
3115 A_BomaMG_comp13244_c0_seq1
371bp
FPKM:4.29 TPM:3.97
3116 A_BomaMG_comp13244_c1_seq1
404bp
hypothetical_protein_PUNSTDRAFT_65277_[Punctularia_strigosozonata_HHB-11173_SS5]
FPKM:7.77 TPM:7.20
3117 A_BomaMG_comp13246_c0_seq1
1149bp
FPKM:7.80 TPM:7.22
3118 A_BomaMG_comp132498_c0_seq1
576bp
FPKM:2.49 TPM:2.31
3119 A_BomaMG_comp13249_c0_seq1
506bp
PREDICTED:_protein_crumbs_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0005509 F calcium ion binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007219 P Notch signaling pathway
GO:0007275 P multicellular organism development
GO:0015629 C actin cytoskeleton
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0019899 F enzyme binding
GO:0030154 P cell differentiation
GO:0030900 P forebrain development
GO:0043235 C receptor complex
GO:0045596 P negative regulation of cell differentiation
GO:0045665 P negative regulation of neuron differentiation
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0048661 P positive regulation of smooth muscle cell proliferation
GO:0048663 P neuron fate commitment
GO:0048844 P artery morphogenesis
GO:0072104 P glomerular capillary formation
FPKM:7.42 TPM:6.87
3120 A_BomaMG_comp13249_c0_seq2
865bp
PREDICTED:_protein_crumbs_[Bombyx_mori]
FPKM:1.31 TPM:1.21
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