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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
3031 A_BomaMG_comp131831_c0_seq1
591bp
putative_pol-like_protein_[Danaus_plexippus]
FPKM:1.74 TPM:1.61
3032 A_BomaMG_comp131839_c0_seq1
1044bp
FPKM:1.77 TPM:1.64
3033 A_BomaMG_comp13183_c0_seq1
886bp
PREDICTED:_leukocyte_surface_antigen_CD53-like_[Bombyx_mori]
GO:0002092 P positive regulation of receptor internalization
GO:0005576 C extracellular region
GO:0005764 C lysosome
GO:0005765 C lysosomal membrane
GO:0005768 C endosome
GO:0005771 C multivesicular body
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0007160 P cell-matrix adhesion
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016477 P cell migration
GO:0031226 C intrinsic component of plasma membrane
GO:0031902 C late endosome membrane
GO:0035646 P endosome to melanosome transport
GO:0042470 C melanosome
GO:0048757 P pigment granule maturation
GO:0070062 C extracellular exosome
GO:0097487 C multivesicular body, internal vesicle
GO:1900746 P regulation of vascular endothelial growth factor signaling pathway
GO:2001046 P positive regulation of integrin-mediated signaling pathway
FPKM:56.56 TPM:52.37
3034 A_BomaMG_comp13184_c0_seq1
861bp
PREDICTED:_ribosomal_RNA_processing_protein_36_homolog_[Amyelois_transitella]
GO:0000462 P maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000469 P cleavage involved in rRNA processing
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0006364 P rRNA processing
GO:0030686 C 90S preribosome
GO:0042254 P ribosome biogenesis
FPKM:10.56 TPM:9.78
3035 A_BomaMG_comp131863_c0_seq1
519bp
FPKM:2.31 TPM:2.14
3036 A_BomaMG_comp13186_c0_seq1
1042bp
PREDICTED:_uncharacterized_protein_LOC101741349_isoform_X2_[Bombyx_mori]
FPKM:10.27 TPM:9.51
3037 A_BomaMG_comp131879_c0_seq1
287bp
PREDICTED:_protein_OSB1,_mitochondrial-like_isoform_X1_[Setaria_italica]
FPKM:1.89 TPM:1.75
3038 A_BomaMG_comp13187_c0_seq1
1623bp
PREDICTED:_synaptic_vesicle_2-related_protein-like_[Bombyx_mori]
GO:0005215 F transporter activity
GO:0006810 P transport
GO:0006836 P neurotransmitter transport
GO:0007268 P chemical synaptic transmission
GO:0008021 C synaptic vesicle
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0022857 F transmembrane transporter activity
GO:0030054 C cell junction
GO:0030672 C synaptic vesicle membrane
GO:0031410 C cytoplasmic vesicle
GO:0045202 C synapse
GO:0055085 P transmembrane transport
FPKM:9.15 TPM:8.48
3039 A_BomaMG_comp131889_c0_seq1
545bp
FPKM:2.52 TPM:2.33
3040 A_BomaMG_comp13188_c0_seq1
1228bp
putative_BTB/POZ_domain-containing_protein_KCTD5_[Danaus_plexippus]
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0016032 P viral process
GO:0032403 F protein-containing complex binding
GO:0051260 P protein homooligomerization
FPKM:9.41 TPM:8.71
3041 A_BomaMG_comp13189_c0_seq1
2102bp
ATP-dependent_zinc_metalloprotease_YME1-like_[Papilio_machaon]
GO:0000166 F nucleotide binding
GO:0004176 F ATP-dependent peptidase activity
GO:0004222 F metalloendopeptidase activity
GO:0005524 F ATP binding
GO:0005743 C mitochondrial inner membrane
GO:0006508 P proteolysis
GO:0006515 P protein quality control for misfolded or incompletely synthesized proteins
GO:0007005 P mitochondrion organization
GO:0008233 F peptidase activity
GO:0008237 F metallopeptidase activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
FPKM:14.32 TPM:13.26
3042 A_BomaMG_comp13189_c0_seq2
2114bp
PREDICTED:_ATP-dependent_zinc_metalloprotease_YME1_homolog_isoform_X4_[Papilio_machaon]
GO:0000166 F nucleotide binding
GO:0004176 F ATP-dependent peptidase activity
GO:0004222 F metalloendopeptidase activity
GO:0005524 F ATP binding
GO:0005743 C mitochondrial inner membrane
GO:0006508 P proteolysis
GO:0006515 P protein quality control for misfolded or incompletely synthesized proteins
GO:0007005 P mitochondrion organization
GO:0008233 F peptidase activity
GO:0008237 F metallopeptidase activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
FPKM:8.90 TPM:8.24
3043 A_BomaMG_comp131911_c0_seq1
1002bp
PREDICTED:_growth_arrest-specific_protein_1-like_[Bombyx_mori]
GO:0002053 P positive regulation of mesenchymal cell proliferation
GO:0005515 F protein binding
GO:0005886 C plasma membrane
GO:0007049 P cell cycle
GO:0007050 P regulation of cell cycle
GO:0007411 P axon guidance
GO:0008284 P positive regulation of cell population proliferation
GO:0008589 P regulation of smoothened signaling pathway
GO:0009953 P dorsal/ventral pattern formation
GO:0010955 P negative regulation of protein processing
GO:0012501 P programmed cell death
GO:0016020 C membrane
GO:0021587 P cerebellum morphogenesis
GO:0021904 P dorsal/ventral neural tube patterning
GO:0030308 P negative regulation of cell growth
GO:0031225 C anchored component of membrane
GO:0042473 P outer ear morphogenesis
GO:0042474 P middle ear morphogenesis
GO:0042476 P odontogenesis
GO:0042733 P embryonic digit morphogenesis
GO:0043010 P camera-type eye development
GO:0043066 P negative regulation of apoptotic process
GO:0045165 P cell fate commitment
GO:0045879 P negative regulation of smoothened signaling pathway
GO:0045880 P positive regulation of smoothened signaling pathway
GO:0045930 P negative regulation of mitotic cell cycle
GO:0046658 C anchored component of plasma membrane
GO:0048589 P developmental growth
GO:0048592 P eye morphogenesis
GO:0048598 P embryonic morphogenesis
GO:0048701 P embryonic cranial skeleton morphogenesis
GO:0048706 P embryonic skeletal system development
GO:0050679 P positive regulation of epithelial cell proliferation
GO:0050680 P negative regulation of epithelial cell proliferation
GO:0060021 P roof of mouth development
GO:0060628 P regulation of ER to Golgi vesicle-mediated transport
GO:2001240 P negative regulation of extrinsic apoptotic signaling pathway in absence of ligand
FPKM:2.19 TPM:2.02
3044 A_BomaMG_comp131925_c0_seq1
784bp
PREDICTED:_carbohydrate_sulfotransferase_3-like_isoform_X2_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0001517 F N-acetylglucosamine 6-O-sulfotransferase activity
GO:0002230 P positive regulation of defense response to virus by host
GO:0005794 C Golgi apparatus
GO:0005975 P carbohydrate metabolic process
GO:0006790 P sulfur compound metabolic process
GO:0008146 F sulfotransferase activity
GO:0008459 F chondroitin 6-sulfotransferase activity
GO:0014012 P peripheral nervous system axon regeneration
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016740 F transferase activity
GO:0030206 P chondroitin sulfate biosynthetic process
GO:0050698 F proteoglycan sulfotransferase activity
GO:0051272 P positive regulation of cellular component movement
GO:0098779 P positive regulation of mitophagy in response to mitochondrial depolarization
GO:0098792 P xenophagy
FPKM:2.14 TPM:1.98
3045 A_BomaMG_comp131932_c0_seq1
394bp
FPKM:3.19 TPM:2.95
3046 A_BomaMG_comp131937_c0_seq1
427bp
FPKM:2.76 TPM:2.56
3047 A_BomaMG_comp13194_c0_seq1
774bp
High_mobility_group_protein_D_[Operophtera_brumata]
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0005694 C chromosome
FPKM:9.54 TPM:8.84
3048 A_BomaMG_comp13195_c0_seq1
1678bp
PREDICTED:_maternal_effect_protein_staufen_isoform_X2_[Bombyx_mori]
FPKM:7.84 TPM:7.26
3049 A_BomaMG_comp131968_c0_seq1
382bp
FPKM:2.54 TPM:2.35
3050 A_BomaMG_comp13198_c0_seq1
523bp
FPKM:3.87 TPM:3.58
3051 A_BomaMG_comp131_c0_seq1
416bp
PREDICTED:_kelch-like_protein_3_isoform_X3_[Bombyx_mori]
GO:0004842 F ubiquitin-protein transferase activity
GO:0031463 C Cul3-RING ubiquitin ligase complex
GO:0042787 P ubiquitin-dependent protein catabolic process
FPKM:0.72 TPM:0.67
3052 A_BomaMG_comp132004_c0_seq1
864bp
PREDICTED:_DNA_replication_licensing_factor_MCM4_[Amyelois_transitella]
GO:0000166 F nucleotide binding
GO:0003677 F DNA binding
GO:0003678 F DNA helicase activity
GO:0004386 F helicase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0006260 P DNA replication
GO:0006270 P DNA replication initiation
GO:0007052 P mitotic spindle organization
GO:0016787 F hydrolase activity
GO:0032508 P DNA duplex unwinding
GO:0042023 P DNA endoreduplication
GO:0042555 C MCM complex
GO:0043138 F 3'-5' DNA helicase activity
FPKM:1.98 TPM:1.84
3053 A_BomaMG_comp13201_c0_seq1
209bp
FPKM:0.00 TPM:0.00
3054 A_BomaMG_comp13201_c1_seq1
962bp
C-type_lectin_16_precursor_[Bombyx_mori]
FPKM:9.45 TPM:8.75
3055 A_BomaMG_comp132023_c0_seq1
328bp
FPKM:1.38 TPM:1.28
3056 A_BomaMG_comp132026_c0_seq1
328bp
FPKM:1.84 TPM:1.71
3057 A_BomaMG_comp13202_c0_seq1
742bp
putative_tRNA_pseudouridine_synthase_2_[Operophtera_brumata]
GO:0001522 P pseudouridine synthesis
GO:0003723 F RNA binding
GO:0005737 C cytoplasm
GO:0006396 P RNA processing
GO:0008033 P tRNA processing
GO:0009451 P RNA modification
GO:0009982 F pseudouridine synthase activity
GO:0016853 F isomerase activity
GO:0044822 F RNA binding
FPKM:0.65 TPM:0.60
3058 A_BomaMG_comp13202_c0_seq2
1374bp
PREDICTED:_probable_tRNA_pseudouridine_synthase_2_[Papilio_polytes]
GO:0001522 P pseudouridine synthesis
GO:0003723 F RNA binding
GO:0006396 P RNA processing
GO:0008033 P tRNA processing
GO:0009451 P RNA modification
GO:0009982 F pseudouridine synthase activity
GO:0016853 F isomerase activity
FPKM:5.65 TPM:5.23
3059 A_BomaMG_comp13203_c0_seq1
1335bp
PREDICTED:_sulfite_oxidase_isoform_X1_[Bombyx_mori]
GO:0005739 C mitochondrion
GO:0005758 C mitochondrial intermembrane space
GO:0006790 P sulfur compound metabolic process
GO:0008482 F sulfite oxidase activity
GO:0016491 F oxidoreductase activity
GO:0020037 F heme binding
GO:0030151 F molybdenum ion binding
GO:0042128 P nitrate assimilation
GO:0046872 F metal ion binding
GO:0055114 P obsolete oxidation-reduction process
FPKM:5.60 TPM:5.19
3060 A_BomaMG_comp13204_c0_seq1
780bp
FPKM:6.51 TPM:6.02
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