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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
2671 A_BomaMG_comp12841_c0_seq1
413bp
hypothetical_protein_UR12_C0013G0005_[candidate_division_TM6_bacterium_GW2011_GWF2_30_66]
FPKM:0.00 TPM:0.00
2672 A_BomaMG_comp12841_c0_seq2
414bp
hypothetical_protein_UR12_C0013G0005_[candidate_division_TM6_bacterium_GW2011_GWF2_30_66]
FPKM:1.17 TPM:1.08
2673 A_BomaMG_comp12841_c1_seq1
206bp
FPKM:1.89 TPM:1.75
2674 A_BomaMG_comp12846_c0_seq1
952bp
PREDICTED:_26S_proteasome_non-ATPase_regulatory_subunit_8_[Papilio_machaon]
GO:0000502 C proteasome complex
GO:0003674 F molecular_function
GO:0005634 C nucleus
GO:0005829 C cytosol
GO:0005838 C proteasome regulatory particle
GO:0006508 P proteolysis
GO:0008541 C proteasome regulatory particle, lid subcomplex
GO:0022624 C proteasome accessory complex
GO:0031647 P regulation of protein stability
GO:0043161 P proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0043248 P proteasome assembly
GO:0070062 C extracellular exosome
GO:1903955 P positive regulation of protein targeting to mitochondrion
FPKM:33.56 TPM:31.08
2675 A_BomaMG_comp12848_c0_seq1
809bp
Uncharacterized_protein_OBRU01_15893_[Operophtera_brumata]
FPKM:92.92 TPM:86.04
2676 A_BomaMG_comp12849_c0_seq1
349bp
FPKM:2.83 TPM:2.62
2677 A_BomaMG_comp12850_c0_seq1
315bp
PREDICTED:_uncharacterized_protein_K02A2.6-like_isoform_X1_[Amyelois_transitella]
FPKM:1.76 TPM:1.63
2678 A_BomaMG_comp12851_c0_seq1
1199bp
mRNA_cap-binding_protein_eIF4E_[Bombyx_mori]
GO:0000082 P G1/S transition of mitotic cell cycle
GO:0000932 C P-body
GO:0001662 P behavioral fear response
GO:0003723 F RNA binding
GO:0003743 F translation initiation factor activity
GO:0005737 C cytoplasm
GO:0005845 C mRNA cap binding complex
GO:0006412 P translation
GO:0006413 P translational initiation
GO:0006417 P regulation of translation
GO:0010494 C cytoplasmic stress granule
GO:0016281 C eukaryotic translation initiation factor 4F complex
GO:0016442 C RISC complex
GO:0017148 P negative regulation of translation
GO:0019827 P stem cell population maintenance
GO:0019899 F enzyme binding
GO:0031370 F eukaryotic initiation factor 4G binding
GO:0033391 C chromatoid body
GO:0044822 F RNA binding
GO:0045665 P negative regulation of neuron differentiation
GO:0045931 P positive regulation of mitotic cell cycle
GO:0048471 C perinuclear region of cytoplasm
GO:0070062 C extracellular exosome
GO:0070491 F DNA-binding transcription factor binding
FPKM:60.20 TPM:55.74
2679 A_BomaMG_comp12853_c0_seq1
1003bp
PREDICTED:_uncharacterized_protein_LOC101744275_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000413 P protein peptidyl-prolyl isomerization
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003755 F peptidyl-prolyl cis-trans isomerase activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006457 P protein folding
FPKM:1.44 TPM:1.34
2680 A_BomaMG_comp12853_c0_seq2
991bp
PREDICTED:_uncharacterized_protein_LOC101744275_isoform_X3_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000413 P protein peptidyl-prolyl isomerization
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003755 F peptidyl-prolyl cis-trans isomerase activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006457 P protein folding
FPKM:4.43 TPM:4.10
2681 A_BomaMG_comp12854_c0_seq1
1756bp
PREDICTED:_exocyst_complex_component_4_[Bombyx_mori]
GO:0000145 C exocyst
GO:0000916 P actomyosin contractile ring contraction
GO:0003674 F molecular_function
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0006887 P exocytosis
GO:0006904 P vesicle docking involved in exocytosis
GO:0007009 P plasma membrane organization
GO:0007110 P meiosis I cytokinesis
GO:0007111 P meiosis II cytokinesis
GO:0007269 P neurotransmitter secretion
GO:0007286 P spermatid development
GO:0007298 P border follicle cell migration
GO:0009925 C basal plasma membrane
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016028 C rhabdomere
GO:0016080 P synaptic vesicle targeting
GO:0016081 P synaptic vesicle docking
GO:0016192 P vesicle-mediated transport
GO:0016324 C apical plasma membrane
GO:0050803 P regulation of synapse structure or activity
GO:0090522 P vesicle tethering involved in exocytosis
GO:0098793 C presynapse
FPKM:4.06 TPM:3.76
2682 A_BomaMG_comp12855_c0_seq1
818bp
Uncharacterized_protein_CELE_F38E1.11_[Caenorhabditis_elegans]
FPKM:3.94 TPM:3.64
2683 A_BomaMG_comp12856_c0_seq1
455bp
salivary_cysteine-rich_peptide_precursor_[Bombyx_mori]
FPKM:6.57 TPM:6.08
2684 A_BomaMG_comp12856_c0_seq2
431bp
salivary_cysteine-rich_peptide_precursor_[Bombyx_mori]
FPKM:0.00 TPM:0.00
2685 A_BomaMG_comp12857_c0_seq1
2288bp
sex-specific_storage-protein_1_precursor_[Bombyx_mori]
GO:0005576 C extracellular region
GO:0005615 C extracellular space
GO:0045735 F nutrient reservoir activity
FPKM:4.98 TPM:4.61
2686 A_BomaMG_comp12858_c0_seq1
297bp
FPKM:3.74 TPM:3.46
2687 A_BomaMG_comp12859_c0_seq1
5044bp
PREDICTED:_LOW_QUALITY_PROTEIN:_extracellular_sulfatase_SULF-1_homolog_[Bombyx_mori]
GO:0003824 F catalytic activity
GO:0005615 C extracellular space
GO:0005783 C endoplasmic reticulum
GO:0005794 C Golgi apparatus
GO:0005795 C Golgi stack
GO:0007389 P pattern specification process
GO:0008045 P motor neuron axon guidance
GO:0008152 P metabolic process
GO:0008449 F N-acetylglucosamine-6-sulfatase activity
GO:0008484 F sulfuric ester hydrolase activity
GO:0009986 C cell surface
GO:0016201 P synaptic target inhibition
GO:0016787 F hydrolase activity
GO:0030178 P negative regulation of Wnt signaling pathway
GO:0030202 P heparin metabolic process
GO:0042059 P negative regulation of epidermal growth factor receptor signaling pathway
GO:0045879 P negative regulation of smoothened signaling pathway
GO:0045880 P positive regulation of smoothened signaling pathway
GO:0046872 F metal ion binding
FPKM:3.21 TPM:2.97
2688 A_BomaMG_comp1285_c0_seq1
244bp
PREDICTED:_irregular_chiasm_C-roughest_protein-like_[Bombyx_mori]
GO:0001745 P compound eye morphogenesis
GO:0005515 F protein binding
GO:0005886 C plasma membrane
GO:0005913 C adherens junction
GO:0007155 P cell adhesion
GO:0007156 P homophilic cell adhesion via plasma membrane adhesion molecules
GO:0007409 P axonogenesis
GO:0007520 P myoblast fusion
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016202 P regulation of striated muscle tissue development
GO:0030165 F PDZ domain binding
GO:0042802 F identical protein binding
GO:0045177 C apical part of cell
GO:0046331 P lateral inhibition
GO:0046666 P retinal cell programmed cell death
GO:0046667 P compound eye retinal cell programmed cell death
GO:0048749 P compound eye development
FPKM:2.01 TPM:1.86
2689 A_BomaMG_comp1285_c1_seq1
257bp
PREDICTED:_irregular_chiasm_C-roughest_protein-like_[Bombyx_mori]
GO:0001745 P compound eye morphogenesis
GO:0005515 F protein binding
GO:0005886 C plasma membrane
GO:0005913 C adherens junction
GO:0007155 P cell adhesion
GO:0007156 P homophilic cell adhesion via plasma membrane adhesion molecules
GO:0007409 P axonogenesis
GO:0007520 P myoblast fusion
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016202 P regulation of striated muscle tissue development
GO:0030165 F PDZ domain binding
GO:0042802 F identical protein binding
GO:0045177 C apical part of cell
GO:0046331 P lateral inhibition
GO:0046666 P retinal cell programmed cell death
GO:0046667 P compound eye retinal cell programmed cell death
GO:0048749 P compound eye development
FPKM:1.71 TPM:1.58
2690 A_BomaMG_comp12861_c0_seq1
254bp
FPKM:5.76 TPM:5.34
2691 A_BomaMG_comp12863_c0_seq1
1917bp
PREDICTED:_homeobox_protein_Hox-B1_[Papilio_polytes]
GO:0001764 P neuron migration
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0008045 P motor neuron axon guidance
GO:0009791 P post-embryonic development
GO:0021520 P spinal cord motor neuron cell fate specification
GO:0021675 P nerve development
GO:0021904 P dorsal/ventral neural tube patterning
GO:0021953 P central nervous system neuron differentiation
GO:0030182 P neuron differentiation
GO:0031016 P pancreas development
GO:0031018 P endocrine pancreas development
GO:0043565 F sequence-specific DNA binding
GO:0048667 P cell morphogenesis involved in neuron differentiation
GO:0048812 P neuron projection morphogenesis
GO:0060539 P diaphragm development
GO:0060541 P respiratory system development
FPKM:3.96 TPM:3.66
2692 A_BomaMG_comp12864_c0_seq1
3342bp
PREDICTED:_DIS3-like_exonuclease_2_[Amyelois_transitella]
GO:0000175 F 3'-5'-exoribonuclease activity
GO:0000176 C nuclear exosome (RNase complex)
GO:0000177 C cytoplasmic exosome (RNase complex)
GO:0000287 F magnesium ion binding
GO:0000291 P nuclear-transcribed mRNA catabolic process, exonucleolytic
GO:0000932 C P-body
GO:0003723 F RNA binding
GO:0004518 F nuclease activity
GO:0004527 F exonuclease activity
GO:0004540 F ribonuclease activity
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005844 C polysome
GO:0006364 P rRNA processing
GO:0007049 P cell cycle
GO:0007067 P mitotic cell cycle
GO:0008266 F poly(U) RNA binding
GO:0008285 P negative regulation of cell population proliferation
GO:0010587 P miRNA catabolic process
GO:0016075 P rRNA catabolic process
GO:0016787 F hydrolase activity
GO:0019827 P stem cell population maintenance
GO:0034427 P nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'
GO:0046872 F metal ion binding
GO:0051301 P cell division
GO:0051306 P mitotic sister chromatid separation
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0090501 P RNA phosphodiester bond hydrolysis
GO:0090503 P RNA phosphodiester bond hydrolysis, exonucleolytic
GO:1990074 P polyuridylation-dependent mRNA catabolic process
FPKM:4.02 TPM:3.73
2693 A_BomaMG_comp128651_c0_seq1
949bp
probable_chitinase_3_precursor_[Papilio_xuthus]
GO:0005576 C extracellular region
GO:0006030 P chitin metabolic process
GO:0008061 F chitin binding
FPKM:2.73 TPM:2.53
2694 A_BomaMG_comp12865_c0_seq1
333bp
PREDICTED:_fatty_acid_synthase-like_[Bombyx_mori]
FPKM:3.57 TPM:3.30
2695 A_BomaMG_comp12865_c1_seq1
1062bp
PREDICTED:_lipopolysaccharide-induced_tumor_necrosis_factor-alpha_factor_homolog_[Bombyx_mori]
GO:0005125 F cytokine activity
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
FPKM:14.76 TPM:13.66
2696 A_BomaMG_comp12868_c1_seq1
251bp
FPKM:8.73 TPM:8.09
2697 A_BomaMG_comp12869_c0_seq1
997bp
PREDICTED:_uncharacterized_protein_LOC106107194_[Papilio_polytes]
FPKM:4.11 TPM:3.81
2698 A_BomaMG_comp12871_c0_seq1
700bp
FPKM:2.68 TPM:2.48
2699 A_BomaMG_comp12871_c1_seq1
670bp
PREDICTED:_uncharacterized_protein_LOC101746233_[Bombyx_mori]
FPKM:4.09 TPM:3.79
2700 A_BomaMG_comp12872_c0_seq1
3235bp
PREDICTED:_CSC1-like_protein_2_[Papilio_xuthus]
GO:0000166 F nucleotide binding
GO:0005764 C lysosome
GO:0005765 C lysosomal membrane
GO:0006810 P transport
GO:0006811 P ion transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0070062 C extracellular exosome
FPKM:50.95 TPM:47.18
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