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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
2551 A_BomaMG_comp12712_c0_seq2
1925bp
PREDICTED:_membrane_protein_TMS1_isoform_X4_[Bombyx_mori]
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0006629 P lipid metabolic process
GO:0008654 P phospholipid biosynthetic process
GO:0015194 F L-serine transmembrane transporter activity
GO:0015825 P L-serine transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
FPKM:15.12 TPM:14.00
2552 A_BomaMG_comp12713_c0_seq1
2009bp
FPKM:4.51 TPM:4.18
2553 A_BomaMG_comp12714_c0_seq1
210bp
FPKM:2.62 TPM:2.42
2554 A_BomaMG_comp127159_c0_seq1
694bp
PREDICTED:_protein-methionine_sulfoxide_oxidase_mical3a_isoform_X1_[Bombyx_mori]
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005925 C focal adhesion
GO:0008270 F zinc ion binding
GO:0030054 C cell junction
GO:0030835 P negative regulation of actin filament depolymerization
GO:0032154 C cleavage furrow
GO:0046872 F metal ion binding
GO:0051015 F actin filament binding
GO:0051017 P actin filament bundle assembly
FPKM:2.71 TPM:2.51
2555 A_BomaMG_comp12715_c0_seq1
3796bp
PREDICTED:_jmjC_domain-containing_histone_demethylation_protein_1_isoform_X3_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0004842 F ubiquitin-protein transferase activity
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007379 P segment specification
GO:0007526 P larval somatic muscle development
GO:0008270 F zinc ion binding
GO:0016491 F oxidoreductase activity
GO:0016568 P chromatin organization
GO:0019005 C SCF ubiquitin ligase complex
GO:0019233 P sensory perception of pain
GO:0031146 P SCF-dependent proteasomal ubiquitin-dependent protein catabolic process
GO:0031519 C PcG protein complex
GO:0033522 P histone H2A ubiquitination
GO:0034647 F histone H3-tri/di/monomethyl-lysine-4 demethylase activity
GO:0034721 P histone H3-K4 demethylation, trimethyl-H3-K4-specific
GO:0046872 F metal ion binding
GO:0051213 F dioxygenase activity
GO:0051864 F histone H3-methyl-lysine-36 demethylase activity
GO:0055114 P obsolete oxidation-reduction process
GO:0070544 P histone H3-K36 demethylation
FPKM:4.43 TPM:4.10
2556 A_BomaMG_comp12716_c0_seq1
3038bp
PREDICTED:_vacuolar_protein_sorting-associated_protein_53_homolog_[Papilio_xuthus]
GO:0000938 C GARP complex
GO:0005768 C endosome
GO:0005794 C Golgi apparatus
GO:0005829 C cytosol
GO:0006810 P transport
GO:0010008 C endosome membrane
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0032456 P endocytic recycling
GO:0042147 P retrograde transport, endosome to Golgi
GO:0055037 C recycling endosome
GO:1990745 C EARP complex
FPKM:5.30 TPM:4.91
2557 A_BomaMG_comp127175_c0_seq1
359bp
FPKM:3.62 TPM:3.36
2558 A_BomaMG_comp12717_c0_seq1
2037bp
PREDICTED:_tyrosine-protein_kinase_Abl_isoform_X2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0001764 P neuron migration
GO:0002009 P morphogenesis of an epithelium
GO:0003382 P epithelial cell morphogenesis
GO:0003402 P planar cell polarity pathway involved in axis elongation
GO:0004672 F protein kinase activity
GO:0004713 F protein tyrosine kinase activity
GO:0004715 F non-membrane spanning protein tyrosine kinase activity
GO:0005102 F signaling receptor binding
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005911 C cell-cell junction
GO:0005912 C adherens junction
GO:0005927 C muscle tendon junction
GO:0005938 C cell cortex
GO:0006468 P protein phosphorylation
GO:0007169 P transmembrane receptor protein tyrosine kinase signaling pathway
GO:0007268 P chemical synaptic transmission
GO:0007303 P cytoplasmic transport, nurse cell to oocyte
GO:0007370 P ventral furrow formation
GO:0007391 P dorsal closure
GO:0007409 P axonogenesis
GO:0007411 P axon guidance
GO:0007417 P central nervous system development
GO:0007419 P ventral cord development
GO:0007611 P learning or memory
GO:0008045 P motor neuron axon guidance
GO:0008064 P regulation of actin polymerization or depolymerization
GO:0008360 P regulation of cell shape
GO:0010592 P positive regulation of lamellipodium assembly
GO:0010906 P regulation of glucose metabolic process
GO:0010977 P negative regulation of neuron projection development
GO:0016199 P axon midline choice point recognition
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0018108 P peptidyl-tyrosine phosphorylation
GO:0019897 C extrinsic component of plasma membrane
GO:0021785 P branchiomotor neuron axon guidance
GO:0030424 C axon
GO:0031234 C extrinsic component of cytoplasmic side of plasma membrane
GO:0031647 P regulation of protein stability
GO:0032880 P regulation of protein localization
GO:0038083 P peptidyl-tyrosine autophosphorylation
GO:0042127 P regulation of cell population proliferation
GO:0045087 P innate immune response
GO:0045179 C apical cortex
GO:0045886 P negative regulation of synaptic assembly at neuromuscular junction
GO:0046827 P positive regulation of protein export from nucleus
GO:0048749 P compound eye development
GO:0048813 P dendrite morphogenesis
GO:0070938 C contractile ring
GO:0072499 P photoreceptor cell axon guidance
FPKM:5.03 TPM:4.66
2559 A_BomaMG_comp127182_c0_seq1
283bp
FPKM:0.65 TPM:0.61
2560 A_BomaMG_comp12719_c0_seq1
1152bp
Prpk-binding_protein_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0008033 P tRNA processing
GO:0019901 F protein kinase binding
FPKM:5.82 TPM:5.39
2561 A_BomaMG_comp1271_c0_seq1
260bp
FPKM:2.48 TPM:2.30
2562 A_BomaMG_comp1271_c1_seq1
225bp
olfactory_receptor_[Bombyx_mori]
FPKM:0.00 TPM:0.00
2563 A_BomaMG_comp12720_c0_seq1
664bp
PREDICTED:_helicase_SKI2W_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003724 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006401 P RNA catabolic process
GO:0006402 P mRNA catabolic process
GO:0016787 F hydrolase activity
GO:0055087 C Ski complex
GO:0070478 P nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay
GO:0070481 P nuclear-transcribed mRNA catabolic process, non-stop decay
FPKM:3.65 TPM:3.38
2564 A_BomaMG_comp12720_c0_seq2
820bp
PREDICTED:_helicase_SKI2W_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003724 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005773 C vacuole
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006401 P RNA catabolic process
GO:0006813 P potassium ion transport
GO:0016787 F hydrolase activity
GO:0035864 P response to potassium ion
GO:0055087 C Ski complex
GO:0070478 P nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay
FPKM:2.97 TPM:2.75
2565 A_BomaMG_comp127220_c0_seq1
399bp
FPKM:3.74 TPM:3.46
2566 A_BomaMG_comp127237_c0_seq1
980bp
PREDICTED:_glycerophosphodiester_phosphodiesterase_1-like_isoform_X1_[Bombyx_mori]
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0006629 P lipid metabolic process
GO:0007186 P G protein-coupled receptor signaling pathway
GO:0008081 F phosphoric diester hydrolase activity
GO:0008889 F glycerophosphodiester phosphodiesterase activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016787 F hydrolase activity
GO:0030659 C cytoplasmic vesicle membrane
GO:0031410 C cytoplasmic vesicle
GO:0046872 F metal ion binding
GO:0047395 F glycerophosphoinositol glycerophosphodiesterase activity
FPKM:2.59 TPM:2.39
2567 A_BomaMG_comp12724_c0_seq1
1078bp
FPKM:5.66 TPM:5.24
2568 A_BomaMG_comp12725_c0_seq1
874bp
peritrophin_type-A_domain_protein_1_[Mamestra_configurata]
GO:0000272 P polysaccharide catabolic process
GO:0004553 F hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0004568 F chitinase activity
GO:0005575 C cellular_component
GO:0005576 C extracellular region
GO:0005975 P carbohydrate metabolic process
GO:0006030 P chitin metabolic process
GO:0006032 P chitin catabolic process
GO:0008061 F chitin binding
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
GO:0016798 F hydrolase activity, acting on glycosyl bonds
FPKM:67.72 TPM:62.71
2569 A_BomaMG_comp12726_c0_seq1
1414bp
PREDICTED:_WD_repeat-containing_protein_89_[Amyelois_transitella]
FPKM:6.26 TPM:5.80
2570 A_BomaMG_comp12727_c0_seq1
764bp
hypothetical_protein_[Photobacterium_aquimaris]
FPKM:5.52 TPM:5.11
2571 A_BomaMG_comp12729_c0_seq1
1433bp
Uncharacterized_protein_OBRU01_18364_[Operophtera_brumata]
FPKM:17.22 TPM:15.95
2572 A_BomaMG_comp1272_c0_seq1
846bp
hypothetical_protein_RR46_01282_[Papilio_xuthus]
FPKM:1.07 TPM:0.99
2573 A_BomaMG_comp12731_c0_seq1
979bp
FPKM:6.49 TPM:6.01
2574 A_BomaMG_comp12732_c0_seq1
430bp
TetR_family_transcriptional_regulator_[Dehalococcoides_mccartyi]
FPKM:1.91 TPM:1.77
2575 A_BomaMG_comp12732_c1_seq1
1368bp
FPKM:3.19 TPM:2.96
2576 A_BomaMG_comp12733_c0_seq1
4476bp
PREDICTED:_moesin/ezrin/radixin_homolog_1_isoform_X2_[Amyelois_transitella]
GO:0000132 P establishment of mitotic spindle orientation
GO:0000902 P cell morphogenesis
GO:0000912 P assembly of actomyosin apparatus involved in cytokinesis
GO:0002009 P morphogenesis of an epithelium
GO:0003779 F actin binding
GO:0005515 F protein binding
GO:0005546 F phosphatidylinositol-4,5-bisphosphate binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005819 C spindle
GO:0005829 C cytosol
GO:0005856 C cytoskeleton
GO:0005884 C actin filament
GO:0005886 C plasma membrane
GO:0005912 C adherens junction
GO:0005938 C cell cortex
GO:0007010 P cytoskeleton organization
GO:0007052 P mitotic spindle organization
GO:0007091 P metaphase/anaphase transition of mitotic cell cycle
GO:0007314 P oocyte anterior/posterior axis specification
GO:0007315 P pole plasm assembly
GO:0007318 P pole plasm protein localization
GO:0007368 P determination of left/right symmetry
GO:0007399 P nervous system development
GO:0008017 F microtubule binding
GO:0008092 F cytoskeletal protein binding
GO:0008104 P protein localization
GO:0008284 P positive regulation of cell population proliferation
GO:0008360 P regulation of cell shape
GO:0009952 P anterior/posterior pattern specification
GO:0015629 C actin cytoskeleton
GO:0016020 C membrane
GO:0016057 P regulation of membrane potential in photoreceptor cell
GO:0016324 C apical plasma membrane
GO:0016336 P establishment or maintenance of polarity of larval imaginal disc epithelium
GO:0019898 C extrinsic component of membrane
GO:0030029 P actin filament-based process
GO:0030036 P actin cytoskeleton organization
GO:0030054 C cell junction
GO:0030866 P cortical actin cytoskeleton organization
GO:0032154 C cleavage furrow
GO:0032956 P regulation of actin cytoskeleton organization
GO:0034453 P microtubule anchoring
GO:0035003 C subapical complex
GO:0035088 P establishment or maintenance of apical/basal cell polarity
GO:0035149 P lumen formation, open tracheal system
GO:0042048 P olfactory behavior
GO:0042052 P rhabdomere development
GO:0042462 P eye photoreceptor cell development
GO:0043622 P cortical microtubule organization
GO:0045169 C fusome
GO:0045197 P establishment or maintenance of epithelial cell apical/basal polarity
GO:0045313 P rhabdomere membrane biogenesis
GO:0045433 P male courtship behavior, veined wing generated song production
GO:0045807 P positive regulation of endocytosis
GO:0051653 P spindle localization
GO:0072499 P photoreceptor cell axon guidance
GO:1902846 P positive regulation of mitotic spindle elongation
GO:1990023 C mitotic spindle midzone
FPKM:111.22 TPM:102.98
2577 A_BomaMG_comp12736_c0_seq1
456bp
glycosyl_transferase_[Desmospora_sp._8437]
FPKM:2.47 TPM:2.29
2578 A_BomaMG_comp12739_c0_seq1
3065bp
hypothetical_protein_RR46_12832_[Papilio_xuthus]
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0006364 P rRNA processing
GO:0030490 P maturation of SSU-rRNA
GO:0030515 F snoRNA binding
GO:0030692 C Noc4p-Nop14p complex
GO:0032040 C small-subunit processome
GO:0042254 P ribosome biogenesis
GO:0042274 P ribosomal small subunit biogenesis
FPKM:4.73 TPM:4.38
2579 A_BomaMG_comp1273_c0_seq1
446bp
FPKM:1.67 TPM:1.54
2580 A_BomaMG_comp127408_c0_seq1
791bp
FPKM:2.33 TPM:2.16
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