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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
2431 A_BomaMG_comp12594_c0_seq1
1173bp
PREDICTED:_thyroglobulin-like_[Bombyx_mori]
GO:0005179 F hormone activity
GO:0005576 C extracellular region
GO:0005615 C extracellular space
GO:0042446 P hormone biosynthetic process
GO:0052689 F carboxylic ester hydrolase activity
FPKM:100.48 TPM:93.04
2432 A_BomaMG_comp12595_c0_seq1
1433bp
eukaryotic_translation_initiation_factor_2_subunit_2_[Bombyx_mori]
GO:0000022 P mitotic spindle elongation
GO:0000049 F tRNA binding
GO:0001677 P formation of translation initiation ternary complex
GO:0003743 F translation initiation factor activity
GO:0005525 F GTP binding
GO:0005829 C cytosol
GO:0005850 C eukaryotic translation initiation factor 2 complex
GO:0005875 C microtubule associated complex
GO:0006412 P translation
GO:0006413 P translational initiation
GO:0007052 P mitotic spindle organization
GO:0016199 P axon midline choice point recognition
GO:0034976 P response to endoplasmic reticulum stress
GO:0046872 F metal ion binding
FPKM:42.23 TPM:39.10
2433 A_BomaMG_comp1259_c0_seq1
302bp
PREDICTED:_cadherin-87A_[Bombyx_mori]
GO:0005509 F calcium ion binding
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0007155 P cell adhesion
GO:0007156 P homophilic cell adhesion via plasma membrane adhesion molecules
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016339 P calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules
GO:0044331 P cell-cell adhesion mediated by cadherin
GO:0046872 F metal ion binding
FPKM:1.67 TPM:1.55
2434 A_BomaMG_comp12600_c0_seq1
1206bp
anaphase_promoting_complex_subunit_10_[Bombyx_mori]
GO:0005680 C anaphase-promoting complex
GO:0007049 P cell cycle
GO:0007067 P mitotic cell cycle
GO:0007092 P positive regulation of ubiquitin protein ligase activity
GO:0007113 P endomitotic cell cycle
GO:0008054 P anaphase-promoting complex-dependent catabolic process
GO:0019233 P sensory perception of pain
GO:0022008 P neurogenesis
GO:0030071 P regulation of mitotic metaphase/anaphase transition
GO:0031145 P anaphase-promoting complex-dependent catabolic process
GO:0051301 P cell division
GO:0070979 P protein K11-linked ubiquitination
GO:0090302 F ubiquitin protein ligase activity
FPKM:4.85 TPM:4.49
2435 A_BomaMG_comp12602_c0_seq1
527bp
uncharacterized_protein_Dere_GG17740_[Drosophila_erecta]
FPKM:4.91 TPM:4.54
2436 A_BomaMG_comp12603_c0_seq1
2624bp
Fibroblast_growth_factor_receptor_substrate_2_[Papilio_xuthus]
GO:0000187 P obsolete activation of MAPK activity
GO:0001702 P gastrulation with mouth forming second
GO:0001759 P organ induction
GO:0002088 P lens development in camera-type eye
GO:0003281 P ventricular septum development
GO:0005068 F transmembrane receptor protein tyrosine kinase adaptor activity
GO:0005104 F fibroblast growth factor receptor binding
GO:0005158 F insulin receptor binding
GO:0005168 F neurotrophin TRKA receptor binding
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0005911 C cell-cell junction
GO:0007169 P transmembrane receptor protein tyrosine kinase signaling pathway
GO:0007405 P neuroblast proliferation
GO:0008543 P fibroblast growth factor receptor signaling pathway
GO:0008595 P anterior/posterior axis specification, embryo
GO:0016020 C membrane
GO:0030900 P forebrain development
GO:0042981 P regulation of apoptotic process
GO:0046619 P lens placode formation involved in camera-type eye formation
GO:0050678 P regulation of epithelial cell proliferation
GO:0060527 P prostate epithelial cord arborization involved in prostate glandular acinus morphogenesis
GO:0070307 P lens fiber cell development
GO:0070372 P regulation of ERK1 and ERK2 cascade
FPKM:4.64 TPM:4.30
2437 A_BomaMG_comp12606_c0_seq1
907bp
DCMP_deaminase_[Bombyx_mori]
GO:0003824 F catalytic activity
GO:0004132 F dCMP deaminase activity
GO:0005515 F protein binding
GO:0005829 C cytosol
GO:0006220 P pyrimidine nucleotide metabolic process
GO:0008152 P metabolic process
GO:0008270 F zinc ion binding
GO:0009165 P nucleotide biosynthetic process
GO:0016787 F hydrolase activity
GO:0046134 P pyrimidine nucleoside biosynthetic process
GO:0046872 F metal ion binding
GO:0070062 C extracellular exosome
FPKM:5.46 TPM:5.06
2438 A_BomaMG_comp12607_c0_seq1
914bp
PREDICTED:_E3_ubiquitin-protein_ligase_HECTD1_isoform_X2_[Bombyx_mori]
GO:0001779 P natural killer cell differentiation
GO:0001843 P neural tube closure
GO:0001892 P embryonic placenta development
GO:0003170 P heart valve development
GO:0003281 P ventricular septum development
GO:0004842 F ubiquitin-protein transferase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0035904 P aorta development
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0046872 F metal ion binding
GO:0051865 P protein autoubiquitination
GO:0060707 P trophoblast giant cell differentiation
GO:0060708 P spongiotrophoblast differentiation
GO:0061630 F ubiquitin protein ligase activity
GO:0070534 P protein K63-linked ubiquitination
GO:1903077 P negative regulation of protein localization to plasma membrane
FPKM:4.85 TPM:4.49
2439 A_BomaMG_comp12608_c0_seq1
506bp
FPKM:4.28 TPM:3.97
2440 A_BomaMG_comp126098_c0_seq1
339bp
PREDICTED:_flagellar_attachment_zone_protein_1_[Amyelois_transitella]
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0005829 C cytosol
GO:0005856 C cytoskeleton
GO:0006810 P transport
GO:0007275 P multicellular organism development
GO:0007293 P germarium-derived egg chamber formation
GO:0007294 P germarium-derived oocyte fate determination
GO:0007309 P oocyte axis specification
GO:0007310 P oocyte dorsal/ventral axis specification
GO:0007312 P oocyte nucleus migration involved in oocyte dorsal/ventral axis specification
GO:0007314 P oocyte anterior/posterior axis specification
GO:0008103 P oocyte microtubule cytoskeleton polarization
GO:0008298 P intracellular mRNA localization
GO:0016325 P oocyte microtubule cytoskeleton organization
GO:0017137 F small GTPase binding
GO:0019233 P sensory perception of pain
GO:0030100 P regulation of endocytosis
GO:0030154 P cell differentiation
GO:0030669 C clathrin-coated endocytic vesicle membrane
GO:0030727 P germarium-derived female germ-line cyst formation
GO:0032050 F clathrin heavy chain binding
GO:0045502 F dynein complex binding
GO:0048477 P oogenesis
GO:0048488 P synaptic vesicle endocytosis
GO:0050658 P RNA transport
GO:0051028 P mRNA transport
GO:0070727 P cellular macromolecule localization
GO:2000302 P positive regulation of synaptic vesicle exocytosis
GO:2000370 P positive regulation of clathrin-dependent endocytosis
FPKM:4.51 TPM:4.17
2441 A_BomaMG_comp126100_c0_seq1
295bp
PREDICTED:_GTPase-activating_protein_isoform_X1_[Bombyx_mori]
GO:0005096 F GTPase activator activity
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0007062 P sister chromatid cohesion
GO:0007067 P mitotic cell cycle
GO:0007165 P signal transduction
GO:0007265 P Ras protein signal transduction
GO:0007426 P tracheal outgrowth, open tracheal system
GO:0007476 P imaginal disc-derived wing morphogenesis
GO:0008293 P torso signaling pathway
GO:0008595 P anterior/posterior axis specification, embryo
GO:0016321 P female meiosis chromosome segregation
GO:0019233 P sensory perception of pain
GO:0022008 P neurogenesis
GO:0031235 C intrinsic component of the cytoplasmic side of the plasma membrane
GO:0035556 P intracellular signal transduction
GO:0043087 P regulation of GTPase activity
GO:0043547 P positive regulation of GTPase activity
GO:0045678 P positive regulation of R7 cell differentiation
GO:0046580 P negative regulation of Ras protein signal transduction
GO:0046872 F metal ion binding
FPKM:5.01 TPM:4.64
2442 A_BomaMG_comp12610_c0_seq1
1524bp
PREDICTED:_LOW_QUALITY_PROTEIN:_rho_guanine_nucleotide_exchange_factor_11_[Bombyx_mori]
GO:0001664 F G protein-coupled receptor binding
GO:0005085 F guanyl-nucleotide exchange factor activity
GO:0005089 F guanyl-nucleotide exchange factor activity
GO:0005096 F GTPase activator activity
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0007186 P G protein-coupled receptor signaling pathway
GO:0016020 C membrane
GO:0035023 P regulation of Rho protein signal transduction
GO:0035556 P intracellular signal transduction
GO:0043547 P positive regulation of GTPase activity
GO:0070062 C extracellular exosome
FPKM:5.39 TPM:4.99
2443 A_BomaMG_comp126112_c0_seq1
337bp
FPKM:2.17 TPM:2.01
2444 A_BomaMG_comp12612_c0_seq1
366bp
FPKM:7.16 TPM:6.63
2445 A_BomaMG_comp12616_c0_seq1
1013bp
HIG1_domain_family_member_1C_[Papilio_xuthus]
GO:0005634 C nucleus
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0031966 C mitochondrial membrane
GO:0042149 P cellular response to glucose starvation
GO:0055114 P obsolete oxidation-reduction process
GO:0070469 C respirasome
GO:0071456 P cellular response to hypoxia
GO:0071902 P positive regulation of protein serine/threonine kinase activity
GO:0090201 P negative regulation of release of cytochrome c from mitochondria
FPKM:4.44 TPM:4.11
2446 A_BomaMG_comp12617_c0_seq1
1672bp
Uncharacterized_protein_OBRU01_10693_[Operophtera_brumata]
FPKM:4.43 TPM:4.10
2447 A_BomaMG_comp126187_c0_seq1
509bp
FPKM:1.76 TPM:1.63
2448 A_BomaMG_comp12618_c0_seq1
1839bp
Upf3_regulator_of_nonsense_transcripts-like_protein_B_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000184 P nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0000398 P mRNA splicing, via spliceosome
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005487 F structural constituent of nuclear pore
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0005815 C microtubule organizing center
GO:0005829 C cytosol
GO:0006369 P termination of RNA polymerase II transcription
GO:0006405 P RNA export from nucleus
GO:0006406 P mRNA export from nucleus
GO:0006810 P transport
GO:0031124 P mRNA 3'-end processing
GO:0035145 C exon-exon junction complex
GO:0044822 F RNA binding
GO:0045727 P positive regulation of translation
GO:0051028 P mRNA transport
FPKM:5.97 TPM:5.53
2449 A_BomaMG_comp1261_c0_seq1
538bp
PREDICTED:_WD_repeat-containing_protein_CG11141_isoform_X1_[Bombyx_mori]
FPKM:1.24 TPM:1.14
2450 A_BomaMG_comp12621_c0_seq1
1233bp
hydroxymethylglutaryl-CoA_lyase_[Bombyx_mori]
GO:0000287 F magnesium ion binding
GO:0003824 F catalytic activity
GO:0004419 F hydroxymethylglutaryl-CoA lyase activity
GO:0005102 F signaling receptor binding
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0005759 C mitochondrial matrix
GO:0005777 C peroxisome
GO:0007005 P mitochondrion organization
GO:0016829 F lyase activity
GO:0030145 F manganese ion binding
GO:0042803 F protein homodimerization activity
GO:0046872 F metal ion binding
GO:0046951 P ketone body biosynthetic process
GO:0051262 P protein tetramerization
FPKM:41.19 TPM:38.14
2451 A_BomaMG_comp12622_c0_seq1
1011bp
PREDICTED:_exosome_complex_component_RRP41_[Papilio_machaon]
GO:0000175 F 3'-5'-exoribonuclease activity
GO:0000176 C nuclear exosome (RNase complex)
GO:0000177 C cytoplasmic exosome (RNase complex)
GO:0000178 C exosome (RNase complex)
GO:0000460 P maturation of 5.8S rRNA
GO:0000956 P nuclear-transcribed mRNA catabolic process
GO:0003723 F RNA binding
GO:0004532 F exoribonuclease activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006364 P rRNA processing
GO:0016075 P rRNA catabolic process
GO:0017091 F mRNA 3'-UTR AU-rich region binding
GO:0030307 P positive regulation of cell growth
GO:0031125 P rRNA 3'-end processing
GO:0034427 P nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'
GO:0034475 P U4 snRNA 3'-end processing
GO:0035327 C euchromatin
GO:0043488 P regulation of mRNA stability
GO:0043928 P exonucleolytic catabolism of deadenylated mRNA
GO:0045006 P DNA deamination
GO:0051607 P defense response to virus
GO:0071028 P nuclear mRNA surveillance
GO:0071044 P histone mRNA catabolic process
GO:0071051 P polyadenylation-dependent snoRNA 3'-end processing
GO:0090503 P RNA phosphodiester bond hydrolysis, exonucleolytic
FPKM:4.04 TPM:3.74
2452 A_BomaMG_comp12624_c0_seq1
588bp
FPKM:3.67 TPM:3.40
2453 A_BomaMG_comp12625_c0_seq1
2455bp
PREDICTED:_MFS-type_transporter_SLC18B1-like_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0006810 P transport
GO:0008150 P biological_process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0055085 P transmembrane transport
FPKM:4.72 TPM:4.37
2454 A_BomaMG_comp12627_c0_seq1
418bp
PREDICTED:_uncharacterized_protein_LOC105390516_isoform_X1_[Plutella_xylostella]
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0005747 C mitochondrial respiratory chain complex I
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0031966 C mitochondrial membrane
GO:0055114 P obsolete oxidation-reduction process
GO:0070469 C respirasome
FPKM:121.56 TPM:112.56
2455 A_BomaMG_comp12629_c0_seq1
871bp
PREDICTED:_INO80_complex_subunit_C_[Plutella_xylostella]
GO:0003674 F molecular_function
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0006281 P DNA repair
GO:0006310 P DNA recombination
GO:0006338 P chromatin remodeling
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006974 P cellular response to DNA damage stimulus
GO:0031011 C Ino80 complex
GO:0071339 C MLL1 complex
FPKM:4.57 TPM:4.23
2456 A_BomaMG_comp1262_c0_seq1
246bp
reverse_transcriptase_[Bombyx_mori]
GO:0003964 F RNA-directed DNA polymerase activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0008152 P metabolic process
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
FPKM:1.96 TPM:1.81
2457 A_BomaMG_comp12631_c0_seq1
2072bp
PREDICTED:_menin_[Papilio_polytes]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000165 P MAPK cascade
GO:0000400 F four-way junction DNA binding
GO:0000403 F Y-form DNA binding
GO:0000784 C chromosome, telomeric region
GO:0000785 C chromatin
GO:0000790 C chromatin
GO:0001503 P ossification
GO:0001776 P leukocyte homeostasis
GO:0001933 P negative regulation of protein phosphorylation
GO:0002051 P osteoblast fate commitment
GO:0002076 P osteoblast development
GO:0003677 F DNA binding
GO:0003682 F chromatin binding
GO:0003690 F double-stranded DNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006338 P chromatin remodeling
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006974 P cellular response to DNA damage stimulus
GO:0007050 P regulation of cell cycle
GO:0008285 P negative regulation of cell population proliferation
GO:0009411 P response to UV
GO:0010332 P response to gamma radiation
GO:0010468 P regulation of gene expression
GO:0010628 P positive regulation of gene expression
GO:0016363 C nuclear matrix
GO:0016568 P chromatin organization
GO:0016571 P histone methylation
GO:0018024 F histone-lysine N-methyltransferase activity
GO:0030097 P hemopoiesis
GO:0030511 P positive regulation of transforming growth factor beta receptor signaling pathway
GO:0030674 F protein-macromolecule adaptor activity
GO:0031062 P positive regulation of histone methylation
GO:0032092 P positive regulation of protein binding
GO:0032154 C cleavage furrow
GO:0034968 P histone lysine methylation
GO:0035097 C histone methyltransferase complex
GO:0043065 P positive regulation of apoptotic process
GO:0043234 C protein-containing complex
GO:0043280 P positive regulation of cysteine-type endopeptidase activity involved in apoptotic process
GO:0043433 P negative regulation of DNA-binding transcription factor activity
GO:0043565 F sequence-specific DNA binding
GO:0044212 F transcription cis-regulatory region binding
GO:0045597 P positive regulation of cell differentiation
GO:0045668 P negative regulation of osteoblast differentiation
GO:0045669 P positive regulation of osteoblast differentiation
GO:0045736 P negative regulation of cyclin-dependent protein serine/threonine kinase activity
GO:0045786 P negative regulation of cell cycle
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046329 P negative regulation of JNK cascade
GO:0046621 P negative regulation of organ growth
GO:0047485 F protein N-terminus binding
GO:0048704 P embryonic skeletal system morphogenesis
GO:0051781 P positive regulation of cell division
GO:0051974 P negative regulation of telomerase activity
GO:0060021 P roof of mouth development
GO:0060135 P maternal process involved in female pregnancy
GO:0070412 F R-SMAD binding
FPKM:4.19 TPM:3.88
2458 A_BomaMG_comp12632_c0_seq1
340bp
putative_ssm4_protein_isoform_1,_partial_[Operophtera_brumata]
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0008270 F zinc ion binding
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0030176 C integral component of endoplasmic reticulum membrane
GO:0046872 F metal ion binding
GO:0070936 P protein K48-linked ubiquitination
FPKM:11.30 TPM:10.46
2459 A_BomaMG_comp12633_c0_seq1
675bp
FPKM:5.77 TPM:5.34
2460 A_BomaMG_comp12634_c0_seq1
708bp
PREDICTED:_protein_MON2_homolog_isoform_X2_[Papilio_xuthus]
GO:0005519 F cytoskeletal regulatory protein binding
GO:0005768 C endosome
GO:0005794 C Golgi apparatus
GO:0006810 P transport
GO:0007318 P pole plasm protein localization
GO:0015031 P protein transport
GO:0031532 P actin cytoskeleton reorganization
FPKM:3.48 TPM:3.22
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