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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
2281 A_BomaMG_comp12451_c0_seq1
1481bp
PREDICTED:_myosin-IA-like_[Bombyx_mori]
FPKM:25.93 TPM:24.01
2282 A_BomaMG_comp12452_c0_seq1
1500bp
troponin_T_transcript_variant_B_[Bombyx_mandarina]
GO:0005509 F calcium ion binding
GO:0005523 F tropomyosin binding
GO:0005861 C troponin complex
GO:0005865 C striated muscle thin filament
GO:0006874 P cellular calcium ion homeostasis
GO:0006937 P regulation of muscle contraction
GO:0007005 P mitochondrion organization
GO:0007498 P mesoderm development
GO:0030239 P myofibril assembly
GO:0030240 P skeletal muscle thin filament assembly
GO:0045214 P sarcomere organization
GO:0046716 P muscle cell cellular homeostasis
GO:0048644 P muscle organ morphogenesis
FPKM:92.75 TPM:85.88
2283 A_BomaMG_comp12452_c0_seq2
1482bp
troponin_T_[Bombyx_mori]
GO:0005509 F calcium ion binding
GO:0005523 F tropomyosin binding
GO:0005861 C troponin complex
GO:0005865 C striated muscle thin filament
GO:0006874 P cellular calcium ion homeostasis
GO:0006937 P regulation of muscle contraction
GO:0007005 P mitochondrion organization
GO:0007498 P mesoderm development
GO:0030239 P myofibril assembly
GO:0030240 P skeletal muscle thin filament assembly
GO:0045214 P sarcomere organization
GO:0046716 P muscle cell cellular homeostasis
GO:0048644 P muscle organ morphogenesis
FPKM:39.48 TPM:36.56
2284 A_BomaMG_comp124538_c0_seq1
778bp
PREDICTED:_rap1_GTPase-GDP_dissociation_stimulator_1-B_[Amyelois_transitella]
FPKM:2.50 TPM:2.31
2285 A_BomaMG_comp12453_c0_seq1
1314bp
ubiquitin_conjugating_enzyme_E2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000209 P protein polyubiquitination
GO:0004842 F ubiquitin-protein transferase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0006301 P postreplication repair
GO:0006979 P response to oxidative stress
GO:0007409 P axonogenesis
GO:0007412 P axon target recognition
GO:0007625 P grooming behavior
GO:0007629 P flight behavior
GO:0007630 P jump response
GO:0008594 P photoreceptor cell morphogenesis
GO:0010942 P positive regulation of cell death
GO:0016567 P protein ubiquitination
GO:0016740 F transferase activity
GO:0031624 F ubiquitin conjugating enzyme binding
GO:0031625 F ubiquitin protein ligase binding
GO:0035370 C UBC13-UEV1A complex
GO:0045977 P positive regulation of mitotic cell cycle, embryonic
GO:0046330 P positive regulation of JNK cascade
GO:0048471 C perinuclear region of cytoplasm
GO:0051124 P synaptic assembly at neuromuscular junction
GO:0060074 P synapse maturation
GO:0061630 F ubiquitin protein ligase activity
GO:0070534 P protein K63-linked ubiquitination
GO:0072347 P response to anesthetic
GO:1902916 P positive regulation of protein polyubiquitination
FPKM:26.38 TPM:24.43
2286 A_BomaMG_comp12454_c0_seq1
2736bp
PREDICTED:_probable_glutamine-dependent_NAD(+)_synthetase_[Papilio_xuthus]
GO:0000166 F nucleotide binding
GO:0003952 F NAD+ synthase (glutamine-hydrolyzing) activity
GO:0004359 F glutaminase activity
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0006807 P nitrogen compound metabolic process
GO:0009435 P NAD biosynthetic process
GO:0016810 F hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds
GO:0016874 F ligase activity
FPKM:23.65 TPM:21.90
2287 A_BomaMG_comp12456_c0_seq1
929bp
small_nuclear_ribonucleoprotein_polypeptide_[Bombyx_mori]
GO:0000398 P mRNA splicing, via spliceosome
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005681 C spliceosomal complex
GO:0005682 C U5 snRNP
GO:0005685 C U1 snRNP
GO:0005686 C U2 snRNP
GO:0005687 C U4 snRNP
GO:0006397 P mRNA processing
GO:0007052 P mitotic spindle organization
GO:0007281 P germ cell development
GO:0008380 P RNA splicing
GO:0008406 P gonad development
GO:0015030 C Cajal body
GO:0016070 P RNA metabolic process
GO:0030529 C ribonucleoprotein complex
GO:0030532 C small nuclear ribonucleoprotein complex
GO:0044822 F RNA binding
GO:0045495 C pole plasm
GO:0046540 C U4/U6 x U5 tri-snRNP complex
GO:0071004 C U2-type prespliceosome
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
FPKM:26.81 TPM:24.82
2288 A_BomaMG_comp124573_c0_seq1
339bp
Histone-lysine_N-methyltransferase_EHMT2_[Papilio_machaon]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0003215 P cardiac right ventricle morphogenesis
GO:0003229 P ventricular cardiac muscle tissue development
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006915 P apoptotic process
GO:0008134 F transcription factor binding
GO:0009791 P post-embryonic development
GO:0030054 C cell junction
GO:0031076 P embryonic camera-type eye development
GO:0035264 P multicellular organism growth
GO:0042633 P hair cycle
GO:0042802 F identical protein binding
GO:0045171 C intercellular bridge
GO:0045597 P positive regulation of cell differentiation
GO:0048871 P multicellular organismal homeostasis
GO:0060048 P cardiac muscle contraction
FPKM:5.15 TPM:4.77
2289 A_BomaMG_comp12457_c0_seq1
945bp
hypothetical_protein_RR46_04589_[Papilio_xuthus]
FPKM:10.86 TPM:10.06
2290 A_BomaMG_comp12458_c0_seq1
539bp
UPF0327_protein_[Operophtera_brumata]
FPKM:112.84 TPM:104.49
2291 A_BomaMG_comp1245_c0_seq1
220bp
hypothetical_protein_VIGAN_01194300,_partial_[Vigna_angularis_var._angularis]
FPKM:1.45 TPM:1.34
2292 A_BomaMG_comp124603_c0_seq1
449bp
FPKM:3.04 TPM:2.82
2293 A_BomaMG_comp12462_c0_seq1
796bp
39S_ribosomal_protein_L27,_mitochondrial_[Bombyx_mori]
GO:0003735 F structural constituent of ribosome
GO:0005622 C intracellular anatomical structure
GO:0005739 C mitochondrion
GO:0005762 C mitochondrial large ribosomal subunit
GO:0005840 C ribosome
GO:0006412 P translation
GO:0030529 C ribonucleoprotein complex
GO:0044822 F RNA binding
FPKM:18.46 TPM:17.09
2294 A_BomaMG_comp12463_c0_seq1
1325bp
mannose-P-dolichol_utilization_defect_1_protein_[Bombyx_mori]
GO:0006486 P protein glycosylation
GO:0006488 P dolichol-linked oligosaccharide biosynthetic process
GO:0006810 P transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
FPKM:17.46 TPM:16.17
2295 A_BomaMG_comp12465_c0_seq1
1340bp
PREDICTED:_tumor_suppressor_candidate_3_[Amyelois_transitella]
GO:0004579 F dolichyl-diphosphooligosaccharide-protein glycotransferase activity
GO:0005739 C mitochondrion
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0006810 P transport
GO:0008250 C oligosaccharyltransferase complex
GO:0015095 F magnesium ion transmembrane transporter activity
GO:0015693 P magnesium ion transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0018279 P protein N-linked glycosylation via asparagine
GO:0050890 P cognition
GO:1903830 P magnesium ion transmembrane transport
FPKM:80.82 TPM:74.83
2296 A_BomaMG_comp12466_c0_seq1
577bp
PREDICTED:_protein_CDV3_homolog_[Amyelois_transitella]
FPKM:32.74 TPM:30.31
2297 A_BomaMG_comp124677_c0_seq1
325bp
PREDICTED:_glycosylphosphatidylinositol_anchor_attachment_1_protein_isoform_X1_[Amyelois_transitella]
FPKM:4.00 TPM:3.70
2298 A_BomaMG_comp12468_c0_seq1
1660bp
FPKM:21.54 TPM:19.95
2299 A_BomaMG_comp12469_c0_seq1
420bp
PREDICTED:_protein_kish-A_[Amyelois_transitella]
GO:0000139 C Golgi membrane
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0005794 C Golgi apparatus
GO:0008150 P biological_process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
FPKM:28.86 TPM:26.72
2300 A_BomaMG_comp1246_c0_seq1
231bp
FPKM:1.21 TPM:1.12
2301 A_BomaMG_comp124702_c0_seq1
1234bp
PREDICTED:_meiosis_arrest_female_protein_1_homolog_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005777 C peroxisome
GO:0010468 P regulation of gene expression
GO:0030154 P cell differentiation
GO:0048477 P oogenesis
GO:0051321 P meiotic cell cycle
FPKM:2.44 TPM:2.26
2302 A_BomaMG_comp12470_c0_seq1
967bp
PREDICTED:_tetraspanin_E118_isoform_X1_[Bombyx_mori]
GO:0005178 F integrin binding
GO:0005515 F protein binding
GO:0005576 C extracellular region
GO:0005615 C extracellular space
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0005925 C focal adhesion
GO:0006928 P movement of cell or subcellular component
GO:0007155 P cell adhesion
GO:0007166 P cell surface receptor signaling pathway
GO:0007338 P single fertilization
GO:0007342 P fusion of sperm to egg plasma membrane involved in single fertilization
GO:0007420 P brain development
GO:0008285 P negative regulation of cell population proliferation
GO:0009414 P response to water deprivation
GO:0009897 C external side of plasma membrane
GO:0009986 C cell surface
GO:0014003 P oligodendrocyte development
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016324 C apical plasma membrane
GO:0030913 P paranodal junction assembly
GO:0031623 P receptor internalization
GO:0070062 C extracellular exosome
GO:0071404 P cellular response to low-density lipoprotein particle stimulus
GO:1903561 C extracellular vesicle
FPKM:426.16 TPM:394.61
2303 A_BomaMG_comp124729_c0_seq1
1552bp
PREDICTED:_calcium/calmodulin-dependent_protein_kinase_type_1-like_[Papilio_xuthus]
GO:0000166 F nucleotide binding
GO:0003824 F catalytic activity
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0004683 F calmodulin-dependent protein kinase activity
GO:0005516 F calmodulin binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006468 P protein phosphorylation
GO:0007275 P multicellular organism development
GO:0008152 P metabolic process
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0032793 P positive regulation of CREB transcription factor activity
GO:0040040 P thermosensory behavior
GO:0045664 P regulation of neuron differentiation
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046777 P protein autophosphorylation
GO:0046872 F metal ion binding
GO:0048812 P neuron projection morphogenesis
FPKM:2.25 TPM:2.08
2304 A_BomaMG_comp12472_c0_seq1
374bp
FPKM:1.76 TPM:1.63
2305 A_BomaMG_comp12472_c1_seq1
449bp
FPKM:1.01 TPM:0.94
2306 A_BomaMG_comp12473_c0_seq1
1118bp
density-regulated_protein_homolog_[Papilio_xuthus]
GO:0002188 P translation reinitiation
GO:0003729 F mRNA binding
GO:0003743 F translation initiation factor activity
GO:0006413 P translational initiation
GO:0006417 P regulation of translation
GO:0008284 P positive regulation of cell population proliferation
GO:0035076 P ecdysone receptor-mediated signaling pathway
GO:0045948 P positive regulation of translational initiation
GO:0046628 P positive regulation of insulin receptor signaling pathway
FPKM:23.49 TPM:21.75
2307 A_BomaMG_comp12474_c0_seq1
1206bp
PREDICTED:_ADP-ribosylation_factor_GTPase-activating_protein_3_isoform_X1_[Amyelois_transitella]
GO:0000139 C Golgi membrane
GO:0005096 F GTPase activator activity
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016192 P vesicle-mediated transport
GO:0043547 P positive regulation of GTPase activity
GO:0046872 F metal ion binding
FPKM:26.59 TPM:24.62
2308 A_BomaMG_comp124754_c0_seq1
701bp
FPKM:1.96 TPM:1.81
2309 A_BomaMG_comp12475_c0_seq1
1677bp
eukaryotic_translation_initiation_factor_5_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003743 F translation initiation factor activity
GO:0005525 F GTP binding
GO:0005829 C cytosol
GO:0006412 P translation
GO:0006413 P translational initiation
GO:0022008 P neurogenesis
FPKM:10.08 TPM:9.33
2310 A_BomaMG_comp12475_c0_seq2
1681bp
eukaryotic_translation_initiation_factor_5_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003743 F translation initiation factor activity
GO:0005525 F GTP binding
GO:0005829 C cytosol
GO:0006412 P translation
GO:0006413 P translational initiation
GO:0022008 P neurogenesis
FPKM:16.55 TPM:15.32
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