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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
1831 A_BomaMG_comp119887_c0_seq1
214bp
olfactory_receptor_[Bombyx_mori]
FPKM:0.81 TPM:0.75
1832 A_BomaMG_comp11988_c0_seq1
417bp
Ral_GTPase-activating_protein_subunit_beta_[Papilio_machaon]
GO:0005096 F GTPase activator activity
GO:0046982 F protein heterodimerization activity
GO:0051056 P regulation of small GTPase mediated signal transduction
GO:0090630 P activation of GTPase activity
FPKM:2.74 TPM:2.53
1833 A_BomaMG_comp11989_c0_seq1
669bp
reverse_transcriptase_[Bombyx_mori]
GO:0003964 F RNA-directed DNA polymerase activity
GO:0005575 C cellular_component
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006313 P transposition, DNA-mediated
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
FPKM:3.40 TPM:3.15
1834 A_BomaMG_comp1198_c0_seq1
279bp
zn-c6_transcription_factor_[Lichtheimia_corymbifera_JMRC:FSU:9682]
FPKM:1.70 TPM:1.57
1835 A_BomaMG_comp11990_c0_seq1
742bp
FPKM:1.93 TPM:1.79
1836 A_BomaMG_comp11991_c0_seq1
420bp
FPKM:2.56 TPM:2.37
1837 A_BomaMG_comp11992_c0_seq1
3668bp
nucleotide_excision_repair_protein_[Bombyx_mori]
GO:0000111 C nucleotide-excision repair factor 2 complex
GO:0003677 F DNA binding
GO:0003684 F damaged DNA binding
GO:0003697 F single-stranded DNA binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006281 P DNA repair
GO:0006289 P nucleotide-excision repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0010777 P meiotic mismatch repair involved in reciprocal meiotic recombination
GO:0071942 C XPC complex
FPKM:1.99 TPM:1.84
1838 A_BomaMG_comp11993_c0_seq1
551bp
FPKM:1.01 TPM:0.93
1839 A_BomaMG_comp11996_c0_seq1
547bp
PREDICTED:_LOW_QUALITY_PROTEIN:_tuberin_[Bombyx_mori]
GO:0001843 P neural tube closure
GO:0005096 F GTPase activator activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005764 C lysosome
GO:0005794 C Golgi apparatus
GO:0005829 C cytosol
GO:0006469 P negative regulation of protein kinase activity
GO:0006606 P protein import into nucleus
GO:0006897 P endocytosis
GO:0007050 P regulation of cell cycle
GO:0007507 P heart development
GO:0008104 P protein localization
GO:0008285 P negative regulation of cell population proliferation
GO:0014067 P negative regulation of phosphatidylinositol 3-kinase signaling
GO:0016020 C membrane
GO:0016032 P viral process
GO:0016192 P vesicle-mediated transport
GO:0019902 F phosphatase binding
GO:0030100 P regulation of endocytosis
GO:0030178 P negative regulation of Wnt signaling pathway
GO:0031267 F small GTPase binding
GO:0032007 P negative regulation of TOR signaling
GO:0033596 C TSC1-TSC2 complex
GO:0042803 F protein homodimerization activity
GO:0043491 P protein kinase B signaling
GO:0043547 P positive regulation of GTPase activity
GO:0046626 P regulation of insulin receptor signaling pathway
GO:0046627 P negative regulation of insulin receptor signaling pathway
GO:0048009 P insulin-like growth factor receptor signaling pathway
GO:0048471 C perinuclear region of cytoplasm
GO:0050918 P positive chemotaxis
GO:0051056 P regulation of small GTPase mediated signal transduction
GO:0051726 P regulation of cell cycle
GO:0051898 P negative regulation of protein kinase B signaling
FPKM:3.71 TPM:3.43
1840 A_BomaMG_comp119979_c0_seq1
1586bp
hypothetical_protein_PABG_04880_[Paracoccidioides_brasiliensis_Pb03]
FPKM:1.98 TPM:1.83
1841 A_BomaMG_comp11997_c0_seq1
642bp
FPKM:1.47 TPM:1.36
1842 A_BomaMG_comp11998_c0_seq1
307bp
FPKM:1.07 TPM:0.99
1843 A_BomaMG_comp11999_c0_seq1
939bp
PREDICTED:_PH_and_SEC7_domain-containing_protein_2_isoform_X3_[Bombyx_mori]
GO:0001726 C ruffle
GO:0005737 C cytoplasm
GO:0005902 C microvillus
GO:0010642 P negative regulation of platelet-derived growth factor receptor signaling pathway
GO:0012505 C endomembrane system
GO:0014067 P negative regulation of phosphatidylinositol 3-kinase signaling
GO:0016020 C membrane
GO:0016055 P Wnt signaling pathway
GO:0017081 F chloride channel regulator activity
GO:0030175 C filopodium
GO:0031528 C microvillus membrane
GO:0032782 P bile acid secretion
GO:0032947 F molecular adaptor activity
GO:0034635 P glutathione transport
GO:0042995 C cell projection
GO:0045859 P regulation of protein kinase activity
GO:0051898 P negative regulation of protein kinase B signaling
GO:0070293 P renal absorption
GO:0071944 C cell periphery
GO:2000146 P negative regulation of cell motility
FPKM:2.28 TPM:2.11
1844 A_BomaMG_comp1199_c0_seq1
609bp
PREDICTED:_solute_carrier_family_22_member_3-like_[Papilio_machaon]
FPKM:1.11 TPM:1.03
1845 A_BomaMG_comp11_c0_seq1
203bp
FPKM:3.03 TPM:2.81
1846 A_BomaMG_comp120001_c0_seq1
445bp
PREDICTED:_uncharacterized_protein_LOC106709836_[Papilio_machaon]
FPKM:2.96 TPM:2.74
1847 A_BomaMG_comp12000_c0_seq1
229bp
hypothetical_protein_FVEG_07718_[Fusarium_verticillioides_7600]
FPKM:3.12 TPM:2.89
1848 A_BomaMG_comp12001_c0_seq1
1036bp
PREDICTED:_uncharacterized_protein_LOC101739352_[Bombyx_mori]
GO:0001077 F DNA-binding transcription activator activity, RNA polymerase II-specific
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0005705 C polytene chromosome interband
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006366 P transcription by RNA polymerase II
GO:0007416 P synapse assembly
GO:0007611 P learning or memory
GO:0007613 P memory
GO:0007616 P long-term memory
GO:0008345 P larval locomotory behavior
GO:0008355 P olfactory learning
GO:0040011 P locomotion
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0048813 P dendrite morphogenesis
GO:0050773 P regulation of dendrite development
FPKM:2.57 TPM:2.38
1849 A_BomaMG_comp12002_c0_seq1
224bp
FPKM:6.76 TPM:6.26
1850 A_BomaMG_comp12004_c0_seq1
322bp
FPKM:2.88 TPM:2.67
1851 A_BomaMG_comp120074_c0_seq1
418bp
PREDICTED:_prominin-like_protein_[Bombyx_mori]
FPKM:4.30 TPM:3.98
1852 A_BomaMG_comp12007_c0_seq1
539bp
FPKM:2.37 TPM:2.19
1853 A_BomaMG_comp12008_c0_seq1
1191bp
hypothetical_protein_[Herbaspirillum_rubrisubalbicans]
FPKM:2.25 TPM:2.08
1854 A_BomaMG_comp12008_c1_seq1
461bp
hypothetical_protein_Kpol_489p12_[Vanderwaltozyma_polyspora_DSM_70294]
FPKM:2.55 TPM:2.36
1855 A_BomaMG_comp12009_c0_seq1
264bp
FPKM:5.14 TPM:4.76
1856 A_BomaMG_comp1200_c0_seq1
333bp
FPKM:1.56 TPM:1.44
1857 A_BomaMG_comp120106_c0_seq1
707bp
FPKM:3.74 TPM:3.46
1858 A_BomaMG_comp12010_c0_seq1
204bp
FPKM:0.99 TPM:0.91
1859 A_BomaMG_comp12011_c0_seq1
522bp
PREDICTED:_39S_ribosomal_protein_L36,_mitochondrial_[Amyelois_transitella]
GO:0003735 F structural constituent of ribosome
GO:0005622 C intracellular anatomical structure
GO:0005739 C mitochondrion
GO:0005762 C mitochondrial large ribosomal subunit
GO:0005840 C ribosome
GO:0006412 P translation
GO:0030529 C ribonucleoprotein complex
GO:0032543 P mitochondrial translation
GO:0042254 P ribosome biogenesis
FPKM:22.90 TPM:21.20
1860 A_BomaMG_comp120130_c0_seq1
311bp
PREDICTED:_nodal_modulator_1_[Bombyx_mori]
FPKM:4.67 TPM:4.33
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