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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
1801 A_BomaMG_comp11964_c0_seq1
308bp
FPKM:1.33 TPM:1.23
1802 A_BomaMG_comp119661_c0_seq1
328bp
FPKM:4.84 TPM:4.48
1803 A_BomaMG_comp11966_c0_seq1
322bp
FPKM:2.88 TPM:2.67
1804 A_BomaMG_comp119683_c0_seq1
324bp
PREDICTED:_exportin-5-like_[Plutella_xylostella]
GO:0000049 F tRNA binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006611 P protein export from nucleus
GO:0006810 P transport
GO:0006886 P intracellular protein transport
GO:0008536 F small GTPase binding
GO:0008565 F obsolete protein transporter activity
GO:0015031 P protein transport
GO:0031047 P gene silencing by RNA
GO:0035281 P pre-miRNA export from nucleus
GO:0042565 C RNA nuclear export complex
GO:0044822 F RNA binding
GO:0070883 F pre-miRNA binding
GO:0090631 F nucleocytoplasmic carrier activity
GO:1900370 P positive regulation of RNA interference
FPKM:5.92 TPM:5.48
1805 A_BomaMG_comp11968_c0_seq1
1314bp
FPKM:1.97 TPM:1.83
1806 A_BomaMG_comp11969_c0_seq1
837bp
PREDICTED:_L-2-hydroxyglutarate_dehydrogenase,_mitochondrial_[Papilio_machaon]
GO:0005739 C mitochondrion
GO:0016491 F oxidoreductase activity
GO:0047545 F 2-hydroxyglutarate dehydrogenase activity
GO:0055114 P obsolete oxidation-reduction process
FPKM:1.81 TPM:1.67
1807 A_BomaMG_comp1196_c0_seq1
241bp
hypothetical_protein_TREMEDRAFT_67581_[Tremella_mesenterica_DSM_1558]
FPKM:0.52 TPM:0.48
1808 A_BomaMG_comp1196_c1_seq1
393bp
PREDICTED:_uncharacterized_protein_LOC106138570_[Amyelois_transitella]
FPKM:1.28 TPM:1.19
1809 A_BomaMG_comp119701_c0_seq1
256bp
AAEL009536-PA_[Aedes_aegypti]
FPKM:3.90 TPM:3.61
1810 A_BomaMG_comp11970_c0_seq1
866bp
PREDICTED:_probable_phospholipid-transporting_ATPase_IA_isoform_X1_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0000166 F nucleotide binding
GO:0000287 F magnesium ion binding
GO:0004012 F ATPase-coupled intramembrane lipid transporter activity
GO:0005524 F ATP binding
GO:0005783 C endoplasmic reticulum
GO:0005794 C Golgi apparatus
GO:0005802 C trans-Golgi network
GO:0005886 C plasma membrane
GO:0008152 P metabolic process
GO:0015914 P phospholipid transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016787 F hydrolase activity
GO:0031410 C cytoplasmic vesicle
GO:0042584 C chromaffin granule membrane
GO:0045332 P phospholipid translocation
GO:0046872 F metal ion binding
GO:0048194 P Golgi vesicle budding
FPKM:2.13 TPM:1.97
1811 A_BomaMG_comp11971_c0_seq1
818bp
PREDICTED:_uncharacterized_protein_LOC106119694_[Papilio_xuthus]
FPKM:2.50 TPM:2.32
1812 A_BomaMG_comp11972_c0_seq1
240bp
PREDICTED:_DENN_domain-containing_protein_2A_[Loxodonta_africana]
FPKM:5.83 TPM:5.40
1813 A_BomaMG_comp11972_c1_seq1
986bp
FPKM:2.15 TPM:1.99
1814 A_BomaMG_comp11973_c0_seq1
660bp
DNA_polymerase_epsilon_catalytic_subunit_A_[Papilio_machaon]
GO:0000082 P G1/S transition of mitotic cell cycle
GO:0000166 F nucleotide binding
GO:0000731 P DNA synthesis involved in DNA repair
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003682 F chromatin binding
GO:0003887 F DNA-directed DNA polymerase activity
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005886 C plasma membrane
GO:0006260 P DNA replication
GO:0006281 P DNA repair
GO:0006287 P base-excision repair, gap-filling
GO:0006297 P nucleotide-excision repair, DNA gap filling
GO:0006974 P cellular response to DNA damage stimulus
GO:0008270 F zinc ion binding
GO:0008408 F 3'-5' exonuclease activity
GO:0008622 C epsilon DNA polymerase complex
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0046872 F metal ion binding
GO:0048568 P embryonic organ development
GO:0051536 F iron-sulfur cluster binding
GO:0051539 F 4 iron, 4 sulfur cluster binding
GO:0071897 P DNA biosynthetic process
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
FPKM:0.00 TPM:0.00
1815 A_BomaMG_comp11973_c0_seq2
660bp
DNA_polymerase_epsilon_catalytic_subunit_A_[Papilio_machaon]
GO:0000082 P G1/S transition of mitotic cell cycle
GO:0000166 F nucleotide binding
GO:0000731 P DNA synthesis involved in DNA repair
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003682 F chromatin binding
GO:0003887 F DNA-directed DNA polymerase activity
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005886 C plasma membrane
GO:0006260 P DNA replication
GO:0006281 P DNA repair
GO:0006287 P base-excision repair, gap-filling
GO:0006297 P nucleotide-excision repair, DNA gap filling
GO:0006974 P cellular response to DNA damage stimulus
GO:0008270 F zinc ion binding
GO:0008408 F 3'-5' exonuclease activity
GO:0008622 C epsilon DNA polymerase complex
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0046872 F metal ion binding
GO:0048568 P embryonic organ development
GO:0051536 F iron-sulfur cluster binding
GO:0051539 F 4 iron, 4 sulfur cluster binding
GO:0071897 P DNA biosynthetic process
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
FPKM:2.97 TPM:2.75
1816 A_BomaMG_comp11974_c0_seq1
2292bp
PREDICTED:_ubiquitin-protein_ligase_E3B_[Amyelois_transitella]
GO:0004842 F ubiquitin-protein transferase activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0042787 P ubiquitin-dependent protein catabolic process
FPKM:2.07 TPM:1.91
1817 A_BomaMG_comp11976_c0_seq1
710bp
PREDICTED:_uncharacterized_protein_LOC101739096_[Bombyx_mori]
GO:0003964 F RNA-directed DNA polymerase activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0008152 P metabolic process
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
FPKM:2.82 TPM:2.61
1818 A_BomaMG_comp11977_c0_seq1
1372bp
PREDICTED:_uncharacterized_protein_LOC101740299_[Bombyx_mori]
FPKM:1.77 TPM:1.64
1819 A_BomaMG_comp11977_c0_seq2
1294bp
PREDICTED:_uncharacterized_protein_LOC101740299_[Bombyx_mori]
FPKM:1.81 TPM:1.68
1820 A_BomaMG_comp11978_c0_seq1
638bp
FPKM:2.67 TPM:2.47
1821 A_BomaMG_comp1197_c0_seq1
389bp
nuclease_PIN_[Paenibacillus_mucilaginosus]
FPKM:1.47 TPM:1.36
1822 A_BomaMG_comp1197_c1_seq1
337bp
FPKM:0.65 TPM:0.60
1823 A_BomaMG_comp119807_c0_seq1
349bp
PREDICTED:_adenomatous_polyposis_coli_protein-like_isoform_X2_[Bombyx_mori]
FPKM:3.64 TPM:3.37
1824 A_BomaMG_comp11980_c0_seq1
393bp
F-box_only_protein_25_[Salmo_salar]
FPKM:0.96 TPM:0.89
1825 A_BomaMG_comp11982_c0_seq1
1051bp
PREDICTED:_transcription_initiation_factor_TFIID_subunit_4_[Bombyx_mori]
FPKM:2.34 TPM:2.16
1826 A_BomaMG_comp11982_c1_seq1
3008bp
PREDICTED:_transcription_initiation_factor_TFIID_subunit_4_[Bombyx_mori]
GO:0001075 F RNA polymerase II general transcription initiation factor activity
GO:0001092 F TFIIA-class transcription factor complex binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005669 C transcription factor TFIID complex
GO:0006351 P transcription, DNA-templated
GO:0006352 P DNA-templated transcription, initiation
GO:0006355 P regulation of transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0006367 P transcription initiation from RNA polymerase II promoter
GO:0007517 P muscle organ development
GO:0008134 F transcription factor binding
GO:0022008 P neurogenesis
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046982 F protein heterodimerization activity
GO:0048813 P dendrite morphogenesis
GO:0051123 P RNA polymerase II preinitiation complex assembly
FPKM:2.14 TPM:1.98
1827 A_BomaMG_comp119832_c0_seq1
208bp
FPKM:6.36 TPM:5.89
1828 A_BomaMG_comp11983_c0_seq1
293bp
hypothetical_protein_[Propionispira_raffinosivorans]
FPKM:3.30 TPM:3.05
1829 A_BomaMG_comp119856_c0_seq1
272bp
FPKM:2.18 TPM:2.02
1830 A_BomaMG_comp11986_c0_seq1
1357bp
PREDICTED:_uncharacterized_protein_LOC101744337_[Bombyx_mori]
FPKM:2.27 TPM:2.11
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