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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
1681 A_BomaMG_comp11888_c0_seq1
819bp
PREDICTED:_UPF0669_protein_C6orf120_homolog_isoform_X2_[Bombyx_mori]
GO:0005576 C extracellular region
FPKM:3.13 TPM:2.90
1682 A_BomaMG_comp11888_c1_seq1
221bp
hypothetical_protein_AUEXF2481DRAFT_26787_[Aureobasidium_subglaciale_EXF-2481]
FPKM:3.56 TPM:3.29
1683 A_BomaMG_comp118898_c0_seq1
666bp
cytochrome_P450_protein_[Bombyx_mandarina]
GO:0004497 F monooxygenase activity
GO:0005506 F iron ion binding
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0016020 C membrane
GO:0016491 F oxidoreductase activity
GO:0016705 F oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0020037 F heme binding
GO:0031090 C organelle membrane
GO:0043231 C intracellular membrane-bounded organelle
GO:0046872 F metal ion binding
GO:0055114 P obsolete oxidation-reduction process
FPKM:2.38 TPM:2.20
1684 A_BomaMG_comp11889_c0_seq1
775bp
peptidase_M23_[Pseudomonas_sp._CB1]
FPKM:2.40 TPM:2.22
1685 A_BomaMG_comp1188_c0_seq1
203bp
FPKM:3.03 TPM:2.81
1686 A_BomaMG_comp11890_c0_seq1
238bp
FPKM:2.73 TPM:2.53
1687 A_BomaMG_comp118918_c0_seq1
298bp
FPKM:2.87 TPM:2.66
1688 A_BomaMG_comp118920_c0_seq1
440bp
PREDICTED:_cactin-like_isoform_X3_[Amyelois_transitella]
GO:0000398 P mRNA splicing, via spliceosome
GO:0005515 F protein binding
GO:0006952 P defense response
GO:0007165 P signal transduction
GO:0007275 P multicellular organism development
GO:0009950 P dorsal/ventral axis specification
GO:0022008 P neurogenesis
GO:0044822 F RNA binding
GO:0048812 P neuron projection morphogenesis
GO:0071013 C catalytic step 2 spliceosome
FPKM:4.20 TPM:3.89
1689 A_BomaMG_comp118938_c0_seq1
420bp
FPKM:1.71 TPM:1.58
1690 A_BomaMG_comp118945_c0_seq1
703bp
FPKM:1.75 TPM:1.62
1691 A_BomaMG_comp11895_c0_seq1
408bp
FPKM:2.69 TPM:2.49
1692 A_BomaMG_comp118975_c0_seq1
605bp
FPKM:3.04 TPM:2.82
1693 A_BomaMG_comp11897_c0_seq1
1024bp
Retrovirus-related_Pol_polyprotein_from_transposon_TNT_1-94_[Papilio_machaon]
GO:0003676 F nucleic acid binding
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0008270 F zinc ion binding
GO:0015074 P DNA integration
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
FPKM:3.25 TPM:3.01
1694 A_BomaMG_comp11897_c1_seq1
636bp
Retrovirus-related_Pol_polyprotein_from_transposon_TNT_1-94_[Papilio_machaon]
GO:0003676 F nucleic acid binding
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0008270 F zinc ion binding
GO:0015074 P DNA integration
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
FPKM:2.68 TPM:2.48
1695 A_BomaMG_comp11898_c0_seq1
294bp
interleukin_enhancer_binding_factor_[Bombyx_mori]
GO:0000398 P mRNA splicing, via spliceosome
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0003725 F double-stranded RNA binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006955 P immune response
GO:0016740 F transferase activity
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
FPKM:3.01 TPM:2.79
1696 A_BomaMG_comp11898_c0_seq2
243bp
PREDICTED:_interleukin_enhancer_binding_factor_isoform_X2_[Bombyx_mori]
GO:0000398 P mRNA splicing, via spliceosome
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0003725 F double-stranded RNA binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006955 P immune response
GO:0016740 F transferase activity
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
FPKM:4.01 TPM:3.71
1697 A_BomaMG_comp11899_c0_seq1
357bp
PREDICTED:_vomeronasal_type-1_receptor_4-like_[Octodon_degus]
FPKM:1.93 TPM:1.79
1698 A_BomaMG_comp1189_c0_seq1
361bp
erythrocyte_carbonic_anhydrase_[Bombyx_mori]
GO:0004064 F arylesterase activity
GO:0004089 F carbonate dehydratase activity
GO:0005737 C cytoplasm
GO:0006730 P one-carbon metabolic process
GO:0008270 F zinc ion binding
GO:0016829 F lyase activity
GO:0016836 F hydro-lyase activity
GO:0046872 F metal ion binding
GO:0070062 C extracellular exosome
FPKM:1.51 TPM:1.40
1699 A_BomaMG_comp119001_c0_seq1
492bp
serine_protease_inhibitor_33_precursor_[Bombyx_mori]
FPKM:1.75 TPM:1.62
1700 A_BomaMG_comp119008_c0_seq1
256bp
FPKM:4.33 TPM:4.01
1701 A_BomaMG_comp11900_c0_seq1
250bp
hypothetical_protein_[[Eubacterium]_cellulosolvens]
FPKM:1.40 TPM:1.29
1702 A_BomaMG_comp11900_c0_seq2
321bp
FPKM:0.24 TPM:0.22
1703 A_BomaMG_comp119012_c0_seq1
510bp
FPKM:2.06 TPM:1.91
1704 A_BomaMG_comp119014_c0_seq1
597bp
PREDICTED:_WD_repeat-containing_protein_3-like_[Bombyx_mori]
GO:0000462 P maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0006364 P rRNA processing
GO:0030515 F snoRNA binding
GO:0031965 C nuclear membrane
GO:0032040 C small-subunit processome
GO:0034388 C Pwp2p-containing subcomplex of 90S preribosome
GO:0044822 F RNA binding
FPKM:2.85 TPM:2.64
1705 A_BomaMG_comp11901_c0_seq1
441bp
DNA-C5-methyltransferase-1_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0003682 F chromatin binding
GO:0003886 F DNA (cytosine-5-)-methyltransferase activity
GO:0005634 C nucleus
GO:0008168 F methyltransferase activity
GO:0008270 F zinc ion binding
GO:0016740 F transferase activity
GO:0032259 P methylation
GO:0046872 F metal ion binding
GO:0090116 P C-5 methylation of cytosine
FPKM:3.27 TPM:3.02
1706 A_BomaMG_comp119036_c0_seq1
486bp
FPKM:1.45 TPM:1.34
1707 A_BomaMG_comp119037_c0_seq1
874bp
E2F1_[Danaus_plexippus]
GO:0001047 F core promoter sequence-specific DNA binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005667 C transcription regulator complex
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007049 P cell cycle
GO:0008134 F transcription factor binding
GO:0051726 P regulation of cell cycle
GO:0072332 P intrinsic apoptotic signaling pathway by p53 class mediator
GO:1990086 P lens fiber cell apoptotic process
FPKM:2.10 TPM:1.95
1708 A_BomaMG_comp11903_c0_seq1
751bp
hypothetical_protein_[Zunongwangia_profunda]
FPKM:2.26 TPM:2.09
1709 A_BomaMG_comp11903_c0_seq2
663bp
PREDICTED:_TATA_element_modulatory_factor_[Papilio_machaon]
GO:0000139 C Golgi membrane
GO:0001675 P acrosome assembly
GO:0001819 P positive regulation of cytokine production
GO:0003677 F DNA binding
GO:0003712 F transcription coregulator activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005783 C endoplasmic reticulum
GO:0005794 C Golgi apparatus
GO:0005829 C cytosol
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0007286 P spermatid development
GO:0007289 P spermatid nucleus differentiation
GO:0008584 P male gonad development
GO:0010629 P negative regulation of gene expression
GO:0016020 C membrane
GO:0030317 P flagellated sperm motility
GO:0032275 P luteinizing hormone secretion
GO:0033327 P Leydig cell differentiation
GO:0042742 P defense response to bacterium
GO:0043066 P negative regulation of apoptotic process
GO:0061136 P regulation of proteasomal protein catabolic process
GO:0071407 P cellular response to organic cyclic compound
GO:2000845 P positive regulation of testosterone secretion
FPKM:3.66 TPM:3.39
1710 A_BomaMG_comp119048_c0_seq1
246bp
FPKM:1.96 TPM:1.81
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