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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
1471 A_BomaMG_comp11730_c0_seq1
1755bp
PREDICTED:_uncharacterized_protein_LOC101741223_[Bombyx_mori]
FPKM:2.39 TPM:2.21
1472 A_BomaMG_comp11732_c0_seq1
274bp
PREDICTED:_serrate_RNA_effector_molecule_homolog_isoform_X3_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0031047 P gene silencing by RNA
GO:0031053 P primary miRNA processing
FPKM:0.62 TPM:0.57
1473 A_BomaMG_comp11732_c0_seq2
315bp
PREDICTED:_serrate_RNA_effector_molecule_homolog_isoform_X3_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0031047 P gene silencing by RNA
GO:0031053 P primary miRNA processing
FPKM:4.35 TPM:4.03
1474 A_BomaMG_comp11733_c0_seq1
728bp
PREDICTED:_uncharacterized_protein_LOC106136276_[Amyelois_transitella]
GO:0003677 F DNA binding
GO:0003714 F transcription corepressor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0007219 P Notch signaling pathway
GO:0007275 P multicellular organism development
GO:0008052 P sensory organ boundary specification
GO:0008586 P imaginal disc-derived wing vein morphogenesis
GO:0008587 P imaginal disc-derived wing margin morphogenesis
GO:0010941 P regulation of cell death
GO:0016360 P sensory organ precursor cell fate determination
GO:0035019 P somatic stem cell population maintenance
GO:0036335 P intestinal stem cell homeostasis
GO:0044719 P regulation of imaginal disc-derived wing size
GO:0045746 P negative regulation of Notch signaling pathway
GO:0046331 P lateral inhibition
GO:0048190 P wing disc dorsal/ventral pattern formation
GO:1903507 P negative regulation of nucleic acid-templated transcription
FPKM:3.21 TPM:2.98
1475 A_BomaMG_comp11733_c0_seq2
281bp
FPKM:0.71 TPM:0.66
1476 A_BomaMG_comp11734_c0_seq1
1483bp
FPKM:2.13 TPM:1.97
1477 A_BomaMG_comp11735_c0_seq1
1985bp
hypothetical_protein_KGM_06508_[Danaus_plexippus]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0005634 C nucleus
GO:0006368 P transcription elongation from RNA polymerase II promoter
GO:0016570 P histone modification
GO:0016593 C Cdc73/Paf1 complex
GO:0032968 P positive regulation of transcription elongation from RNA polymerase II promoter
GO:0035206 P regulation of hemocyte proliferation
GO:1990269 F RNA polymerase II C-terminal domain phosphoserine binding
FPKM:2.48 TPM:2.29
1478 A_BomaMG_comp11738_c0_seq1
987bp
PREDICTED:_geminin_isoform_X2_[Amyelois_transitella]
GO:0003714 F transcription corepressor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006275 P regulation of DNA replication
GO:0006461 P protein-containing complex assembly
GO:0007049 P cell cycle
GO:0008156 P negative regulation of DNA replication
GO:0009887 P animal organ morphogenesis
GO:0042826 F histone deacetylase binding
GO:0045786 P negative regulation of cell cycle
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0070491 F DNA-binding transcription factor binding
FPKM:3.19 TPM:2.96
1479 A_BomaMG_comp11739_c0_seq1
793bp
PREDICTED:_uncharacterized_protein_LOC101736443_[Bombyx_mori]
FPKM:2.38 TPM:2.20
1480 A_BomaMG_comp117404_c0_seq1
427bp
PREDICTED:_liprin-beta-1_isoform_X12_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005615 C extracellular space
GO:0005622 C intracellular anatomical structure
FPKM:3.59 TPM:3.33
1481 A_BomaMG_comp11740_c0_seq1
1725bp
PREDICTED:_TAF5-like_RNA_polymerase_II_p300/CBP-associated_factor-associated_factor_65_kDa_subunit_5L_[Amyelois_transitella]
GO:0003713 F transcription coactivator activity
GO:0004402 F histone acetyltransferase activity
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0030914 C SAGA complex
GO:0033276 C transcription factor TFTC complex
GO:0043966 P histone H3 acetylation
FPKM:2.76 TPM:2.56
1482 A_BomaMG_comp11742_c0_seq1
1291bp
PREDICTED:_uncharacterized_protein_LOC106136881_[Amyelois_transitella]
GO:0003674 F molecular_function
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0007399 P nervous system development
GO:0021987 P cerebral cortex development
GO:0048813 P dendrite morphogenesis
FPKM:2.41 TPM:2.23
1483 A_BomaMG_comp11743_c0_seq1
411bp
FPKM:1.63 TPM:1.50
1484 A_BomaMG_comp11745_c0_seq1
1891bp
PREDICTED:_RING_finger_and_transmembrane_domain-containing_protein_2_isoform_X2_[Papilio_xuthus]
GO:0008270 F zinc ion binding
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0046872 F metal ion binding
FPKM:2.16 TPM:2.00
1485 A_BomaMG_comp11745_c1_seq1
710bp
PREDICTED:_RING_finger_and_transmembrane_domain-containing_protein_2_[Amyelois_transitella]
FPKM:2.63 TPM:2.43
1486 A_BomaMG_comp11746_c0_seq1
366bp
PREDICTED:_phosphoinositide_3-kinase_regulatory_subunit_4_isoform_X2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005643 C nuclear pore
GO:0005768 C endosome
GO:0005770 C late endosome
GO:0005776 C autophagosome
GO:0005829 C cytosol
GO:0005930 C axoneme
GO:0006468 P protein phosphorylation
GO:0006623 P protein targeting to vacuole
GO:0006661 P phosphatidylinositol biosynthetic process
GO:0016020 C membrane
GO:0016236 P macroautophagy
GO:0016301 F kinase activity
GO:0016303 F 1-phosphatidylinositol-3-kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0030242 P autophagy of peroxisome
GO:0030670 C phagocytic vesicle membrane
GO:0031410 C cytoplasmic vesicle
GO:0032465 P regulation of cytokinesis
GO:0032801 P receptor catabolic process
GO:0034162 P toll-like receptor 9 signaling pathway
GO:0034271 C phosphatidylinositol 3-kinase complex, class III, type I
GO:0034272 C phosphatidylinositol 3-kinase complex, class III, type II
GO:0035032 C phosphatidylinositol 3-kinase complex, class III
GO:0036092 P phosphatidylinositol-3-phosphate biosynthetic process
GO:0042149 P cellular response to glucose starvation
GO:0043552 P positive regulation of phosphatidylinositol 3-kinase activity
GO:0045324 P late endosome to vacuole transport
GO:0071561 C nucleus-vacuole junction
FPKM:1.28 TPM:1.19
1487 A_BomaMG_comp11746_c1_seq1
321bp
FPKM:3.38 TPM:3.13
1488 A_BomaMG_comp11747_c0_seq1
1864bp
PREDICTED:_ankyrin_repeat_and_SOCS_box_protein_3-like_isoform_X1_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005622 C intracellular anatomical structure
GO:0016567 P protein ubiquitination
GO:0035556 P intracellular signal transduction
FPKM:2.47 TPM:2.29
1489 A_BomaMG_comp11748_c0_seq1
386bp
PREDICTED:_uncharacterized_protein_LOC101746000_isoform_X3_[Bombyx_mori]
FPKM:3.65 TPM:3.38
1490 A_BomaMG_comp11749_c0_seq1
262bp
uncharacterized_protein_Dana_GF17632,_isoform_A_[Drosophila_ananassae]
FPKM:5.66 TPM:5.24
1491 A_BomaMG_comp11750_c0_seq1
1018bp
unknown_protein,_partial_[Papilio_xuthus]
FPKM:2.31 TPM:2.14
1492 A_BomaMG_comp117513_c0_seq1
527bp
PREDICTED:_nuclear_pore_complex_protein_Nup98-Nup96_isoform_X1_[Bombyx_mori]
GO:0000059 P obsolete protein import into nucleus, docking
GO:0000776 C kinetochore
GO:0000973 P posttranscriptional tethering of RNA polymerase II gene DNA at nuclear periphery
GO:0003723 F RNA binding
GO:0005487 F structural constituent of nuclear pore
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005635 C nuclear envelope
GO:0005643 C nuclear pore
GO:0005654 C nucleoplasm
GO:0006260 P DNA replication
GO:0006405 P RNA export from nucleus
GO:0006810 P transport
GO:0008139 F nuclear localization sequence binding
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0017056 F structural constituent of nuclear pore
GO:0031080 C nuclear pore outer ring
GO:0031965 C nuclear membrane
GO:0034398 P telomere tethering at nuclear periphery
GO:0034399 C nuclear periphery
GO:0042277 F peptide binding
GO:0042405 C nuclear inclusion body
GO:0044614 C nuclear pore cytoplasmic filaments
GO:0044615 C nuclear pore nuclear basket
GO:0051028 P mRNA transport
GO:0051292 P nuclear pore complex assembly
FPKM:0.00 TPM:0.00
1493 A_BomaMG_comp117513_c0_seq2
528bp
PREDICTED:_nuclear_pore_complex_protein_Nup98-Nup96_isoform_X1_[Bombyx_mori]
GO:0000059 P obsolete protein import into nucleus, docking
GO:0000776 C kinetochore
GO:0000973 P posttranscriptional tethering of RNA polymerase II gene DNA at nuclear periphery
GO:0003723 F RNA binding
GO:0005487 F structural constituent of nuclear pore
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005635 C nuclear envelope
GO:0005643 C nuclear pore
GO:0005654 C nucleoplasm
GO:0006260 P DNA replication
GO:0006405 P RNA export from nucleus
GO:0006810 P transport
GO:0008139 F nuclear localization sequence binding
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0017056 F structural constituent of nuclear pore
GO:0031080 C nuclear pore outer ring
GO:0031965 C nuclear membrane
GO:0034398 P telomere tethering at nuclear periphery
GO:0034399 C nuclear periphery
GO:0042277 F peptide binding
GO:0042405 C nuclear inclusion body
GO:0044614 C nuclear pore cytoplasmic filaments
GO:0044615 C nuclear pore nuclear basket
GO:0051028 P mRNA transport
GO:0051292 P nuclear pore complex assembly
FPKM:3.42 TPM:3.17
1494 A_BomaMG_comp11751_c0_seq1
710bp
PREDICTED:_ribonuclease_P_protein_subunit_p29_[Plutella_xylostella]
GO:0000171 F ribonuclease MRP activity
GO:0000172 C ribonuclease MRP complex
GO:0003674 F molecular_function
GO:0003723 F RNA binding
GO:0004526 F ribonuclease P activity
GO:0004540 F ribonuclease activity
GO:0005575 C cellular_component
GO:0005634 C nucleus
GO:0005655 C nucleolar ribonuclease P complex
GO:0005730 C nucleolus
GO:0006364 P rRNA processing
GO:0006379 P mRNA cleavage
GO:0008033 P tRNA processing
GO:0008150 P biological_process
GO:0016787 F hydrolase activity
GO:0030677 C ribonuclease P complex
GO:0033204 F ribonuclease P RNA binding
GO:0090502 P RNA phosphodiester bond hydrolysis, endonucleolytic
FPKM:2.11 TPM:1.95
1495 A_BomaMG_comp117521_c0_seq1
432bp
hypothetical_protein_KGM_11016_[Danaus_plexippus]
FPKM:2.84 TPM:2.63
1496 A_BomaMG_comp11752_c0_seq1
631bp
hypothetical_protein_[Veillonella_parvula]
FPKM:1.88 TPM:1.74
1497 A_BomaMG_comp11755_c0_seq1
268bp
FPKM:1.14 TPM:1.05
1498 A_BomaMG_comp11755_c0_seq2
268bp
hypothetical_protein_TRAVEDRAFT_68553_[Trametes_versicolor_FP-101664_SS1]
FPKM:0.00 TPM:0.00
1499 A_BomaMG_comp11755_c0_seq3
412bp
FPKM:2.06 TPM:1.91
1500 A_BomaMG_comp11756_c0_seq1
890bp
PREDICTED:_mediator_of_RNA_polymerase_II_transcription_subunit_13_[Bombyx_mori]
GO:0001104 F transcription coregulator activity
GO:0004252 F serine-type endopeptidase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006366 P transcription by RNA polymerase II
GO:0006367 P transcription initiation from RNA polymerase II promoter
GO:0006508 P proteolysis
GO:0007275 P multicellular organism development
GO:0007526 P larval somatic muscle development
GO:0016592 C mediator complex
GO:0022416 P chaeta development
GO:0030177 P positive regulation of Wnt signaling pathway
GO:0036011 P imaginal disc-derived leg segmentation
GO:0045165 P cell fate commitment
GO:0045498 P sex comb development
GO:0048190 P wing disc dorsal/ventral pattern formation
GO:0048749 P compound eye development
GO:0070847 C core mediator complex
FPKM:2.96 TPM:2.74
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