SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search Assembled RNA-Seq

previous next from show/39865
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
1411 A_BomaMG_comp11683_c0_seq1
455bp
FPKM:1.98 TPM:1.84
1412 A_BomaMG_comp11684_c0_seq1
563bp
FPKM:2.49 TPM:2.30
1413 A_BomaMG_comp11685_c0_seq1
283bp
FPKM:3.27 TPM:3.03
1414 A_BomaMG_comp11686_c0_seq1
556bp
PREDICTED:_uncharacterized_protein_LOC106120248_[Papilio_xuthus]
FPKM:2.26 TPM:2.09
1415 A_BomaMG_comp116879_c0_seq1
323bp
FPKM:5.48 TPM:5.07
1416 A_BomaMG_comp11688_c0_seq1
1066bp
PREDICTED:_nuclear_pore_complex_protein_Nup88_[Bombyx_mori]
GO:0000055 P ribosomal large subunit export from nucleus
GO:0000056 P ribosomal small subunit export from nucleus
GO:0002376 P immune system process
GO:0005215 F transporter activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005635 C nuclear envelope
GO:0005643 C nuclear pore
GO:0006406 P mRNA export from nucleus
GO:0006606 P protein import into nucleus
GO:0006810 P transport
GO:0006955 P immune response
GO:0007424 P open tracheal system development
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0019730 P antimicrobial humoral response
GO:0022008 P neurogenesis
GO:0031965 C nuclear membrane
GO:0035147 P branch fusion, open tracheal system
GO:0046826 P negative regulation of protein export from nucleus
GO:0051028 P mRNA transport
FPKM:1.99 TPM:1.84
1417 A_BomaMG_comp11688_c0_seq2
1002bp
PREDICTED:_nuclear_pore_complex_protein_Nup88_[Bombyx_mori]
GO:0000055 P ribosomal large subunit export from nucleus
GO:0000056 P ribosomal small subunit export from nucleus
GO:0005215 F transporter activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005643 C nuclear pore
GO:0005654 C nucleoplasm
GO:0006406 P mRNA export from nucleus
GO:0006606 P protein import into nucleus
GO:0006611 P protein export from nucleus
GO:0006810 P transport
GO:0007067 P mitotic cell cycle
GO:0015031 P protein transport
GO:0051028 P mRNA transport
FPKM:0.49 TPM:0.46
1418 A_BomaMG_comp11689_c0_seq1
506bp
PREDICTED:_uncharacterized_protein_LOC106101681_[Papilio_polytes]
FPKM:2.29 TPM:2.12
1419 A_BomaMG_comp1168_c0_seq1
785bp
FPKM:1.07 TPM:0.99
1420 A_BomaMG_comp11690_c0_seq1
1933bp
PREDICTED:_uncharacterized_protein_LOC106125309_[Papilio_xuthus]
GO:0001158 F cis-regulatory region sequence-specific DNA binding
GO:0001947 P heart looping
GO:0003677 F DNA binding
GO:0003682 F chromatin binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007275 P multicellular organism development
GO:0007399 P nervous system development
GO:0008016 P regulation of heart contraction
GO:0010842 P retina layer formation
GO:0035881 P amacrine cell differentiation
GO:0036302 P atrioventricular canal development
GO:0043565 F sequence-specific DNA binding
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0060579 P ventral spinal cord interneuron fate commitment
FPKM:2.12 TPM:1.97
1421 A_BomaMG_comp11691_c0_seq1
610bp
hypothetical_protein_RR46_12684_[Papilio_xuthus]
FPKM:2.21 TPM:2.05
1422 A_BomaMG_comp11692_c0_seq1
388bp
FPKM:2.30 TPM:2.13
1423 A_BomaMG_comp11693_c0_seq1
607bp
FPKM:1.43 TPM:1.33
1424 A_BomaMG_comp11694_c0_seq1
389bp
ATP-dependent_RNA_helicase_DDX54-like_protein_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0006364 P rRNA processing
GO:0010501 P RNA secondary structure unwinding
GO:0016787 F hydrolase activity
GO:0016818 F hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
GO:0042254 P ribosome biogenesis
FPKM:3.27 TPM:3.02
1425 A_BomaMG_comp11695_c0_seq1
865bp
PREDICTED:_uncharacterized_protein_LOC105386134_[Plutella_xylostella]
FPKM:1.54 TPM:1.42
1426 A_BomaMG_comp11696_c0_seq1
999bp
Poly(rC)-binding_protein_4_[Papilio_machaon]
FPKM:2.62 TPM:2.43
1427 A_BomaMG_comp11698_c0_seq1
730bp
putative_histone-fold_protein_CHRAC_subunit_[Danaus_plexippus]
GO:0003677 F DNA binding
GO:0003887 F DNA-directed DNA polymerase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006338 P chromatin remodeling
GO:0008152 P metabolic process
GO:0008622 C epsilon DNA polymerase complex
GO:0008623 C CHRAC
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0046982 F protein heterodimerization activity
GO:0071897 P DNA biosynthetic process
FPKM:2.53 TPM:2.34
1428 A_BomaMG_comp11699_c0_seq1
853bp
FPKM:2.02 TPM:1.87
1429 A_BomaMG_comp1169_c0_seq1
367bp
FPKM:0.91 TPM:0.85
1430 A_BomaMG_comp1169_c1_seq1
262bp
NADH_dehydrogenase_subunit_2_(mitochondrion)_[Octomeris_sp._BKKC-2014]
FPKM:1.62 TPM:1.50
1431 A_BomaMG_comp11700_c0_seq1
1367bp
PREDICTED:_DNA_replication_licensing_factor_Mcm3_isoform_X2_[Amyelois_transitella]
GO:0000166 F nucleotide binding
GO:0003677 F DNA binding
GO:0003678 F DNA helicase activity
GO:0003682 F chromatin binding
GO:0004386 F helicase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005656 C nuclear pre-replicative complex
GO:0006260 P DNA replication
GO:0006267 P pre-replicative complex assembly involved in nuclear cell cycle DNA replication
GO:0006270 P DNA replication initiation
GO:0007049 P cell cycle
GO:0007095 P mitotic G2 DNA damage checkpoint signaling
GO:0016787 F hydrolase activity
GO:0022008 P neurogenesis
GO:0032508 P DNA duplex unwinding
GO:0042555 C MCM complex
GO:0043138 F 3'-5' DNA helicase activity
FPKM:2.48 TPM:2.30
1432 A_BomaMG_comp117014_c0_seq1
303bp
hypothetical_protein_[Pantoea_ananatis]
FPKM:3.04 TPM:2.81
1433 A_BomaMG_comp11702_c0_seq1
314bp
FPKM:3.30 TPM:3.06
1434 A_BomaMG_comp11703_c0_seq1
1829bp
PREDICTED:_uncharacterized_protein_LOC106137277_[Amyelois_transitella]
GO:0003674 F molecular_function
GO:0003700 F DNA-binding transcription factor activity
GO:0005575 C cellular_component
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008150 P biological_process
GO:0038202 P TORC1 signaling
GO:0042594 P response to starvation
GO:0042803 F protein homodimerization activity
GO:0043565 F sequence-specific DNA binding
GO:0044246 P regulation of metabolic process
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0046982 F protein heterodimerization activity
FPKM:2.03 TPM:1.88
1435 A_BomaMG_comp11703_c1_seq1
284bp
PREDICTED:_protein_CREBRF_homolog_[Papilio_polytes]
FPKM:1.62 TPM:1.50
1436 A_BomaMG_comp11704_c0_seq1
516bp
FPKM:3.55 TPM:3.28
1437 A_BomaMG_comp11705_c0_seq1
1093bp
PREDICTED:_molybdopterin_synthase_catalytic_subunit_2_isoform_X1_[Amyelois_transitella]
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006777 P Mo-molybdopterin cofactor biosynthetic process
GO:0016740 F transferase activity
GO:0019008 C molybdopterin synthase complex
GO:0030366 F molybdopterin synthase activity
GO:0032324 P molybdopterin cofactor biosynthetic process
FPKM:1.46 TPM:1.35
1438 A_BomaMG_comp11705_c0_seq2
1513bp
hypothetical_protein_KGM_22030_[Danaus_plexippus]
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006777 P Mo-molybdopterin cofactor biosynthetic process
GO:0016740 F transferase activity
GO:0019008 C molybdopterin synthase complex
GO:0030366 F molybdopterin synthase activity
FPKM:1.03 TPM:0.96
1439 A_BomaMG_comp11706_c0_seq1
275bp
polyketide_synthase_[Streptococcus_mutans]
FPKM:2.83 TPM:2.62
1440 A_BomaMG_comp117072_c0_seq1
1441bp
PREDICTED:_PCNA-associated_factor-like_[Papilio_xuthus]
FPKM:2.90 TPM:2.69
previous next from show/39865

- SilkBase 1999-2023 -