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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
1381 A_BomaMG_comp11659_c0_seq1
435bp
FPKM:1.76 TPM:1.63
1382 A_BomaMG_comp11659_c0_seq2
549bp
FPKM:0.45 TPM:0.41
1383 A_BomaMG_comp1165_c0_seq1
314bp
PREDICTED:_histone-lysine_N-methyltransferase_trithorax-like_[Bombyx_mori]
GO:0000123 C histone acetyltransferase complex
GO:0003677 F DNA binding
GO:0003682 F chromatin binding
GO:0003700 F DNA-binding transcription factor activity
GO:0004402 F histone acetyltransferase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0005700 C polytene chromosome
GO:0005875 C microtubule associated complex
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007275 P multicellular organism development
GO:0007411 P axon guidance
GO:0008023 C transcription elongation factor complex
GO:0008157 F protein phosphatase 1 binding
GO:0008168 F methyltransferase activity
GO:0008270 F zinc ion binding
GO:0008354 P germ cell migration
GO:0016568 P chromatin organization
GO:0016571 P histone methylation
GO:0016573 P histone acetylation
GO:0016740 F transferase activity
GO:0018024 F histone-lysine N-methyltransferase activity
GO:0019233 P sensory perception of pain
GO:0032259 P methylation
GO:0032968 P positive regulation of transcription elongation from RNA polymerase II promoter
GO:0035097 C histone methyltransferase complex
GO:0042800 F histone methyltransferase activity (H3-K4 specific)
GO:0042802 F identical protein binding
GO:0042803 F protein homodimerization activity
GO:0043565 F sequence-specific DNA binding
GO:0043966 P histone H3 acetylation
GO:0044212 F transcription cis-regulatory region binding
GO:0044665 C MLL1/2 complex
GO:0046872 F metal ion binding
GO:0048096 P epigenetic maintenance of chromatin in transcription-competent conformation
GO:0051568 P histone H3-K4 methylation
GO:2001020 P regulation of response to DNA damage stimulus
FPKM:1.27 TPM:1.18
1384 A_BomaMG_comp11660_c0_seq1
500bp
PREDICTED:_arginine/serine-rich_coiled-coil_protein_2_isoform_X1_[Bombyx_mori]
FPKM:0.57 TPM:0.53
1385 A_BomaMG_comp11660_c0_seq2
486bp
PREDICTED:_arginine/serine-rich_coiled-coil_protein_2_isoform_X2_[Bombyx_mori]
FPKM:2.96 TPM:2.74
1386 A_BomaMG_comp116614_c0_seq1
548bp
PREDICTED:_acylphosphatase-2_isoform_X1_[Amyelois_transitella]
GO:0003998 F acylphosphatase activity
GO:0005515 F protein binding
GO:0005739 C mitochondrion
GO:0006796 P phosphate-containing compound metabolic process
GO:0016787 F hydrolase activity
FPKM:3.14 TPM:2.91
1387 A_BomaMG_comp11661_c0_seq1
989bp
FPKM:2.05 TPM:1.90
1388 A_BomaMG_comp11662_c0_seq1
395bp
FPKM:2.22 TPM:2.06
1389 A_BomaMG_comp11663_c0_seq1
723bp
FPKM:2.50 TPM:2.32
1390 A_BomaMG_comp11666_c0_seq1
205bp
FPKM:2.90 TPM:2.69
1391 A_BomaMG_comp11667_c0_seq1
790bp
PREDICTED:_uncharacterized_protein_LOC101735819_isoform_X2_[Bombyx_mori]
FPKM:2.06 TPM:1.91
1392 A_BomaMG_comp11668_c0_seq1
469bp
FPKM:1.89 TPM:1.75
1393 A_BomaMG_comp11668_c1_seq1
357bp
hypothetical_protein_PTSG_12933_[Salpingoeca_rosetta]
FPKM:1.93 TPM:1.79
1394 A_BomaMG_comp1166_c0_seq1
415bp
Uncharacterized_protein_LW93_11234_[Fusarium_fujikuroi]
FPKM:0.73 TPM:0.67
1395 A_BomaMG_comp116700_c0_seq1
751bp
PREDICTED:_uncharacterized_protein_LOC106137902_[Amyelois_transitella]
FPKM:2.74 TPM:2.53
1396 A_BomaMG_comp11670_c0_seq1
1456bp
DNA_ligase_3_[Papilio_xuthus]
GO:0000166 F nucleotide binding
GO:0000794 C condensed nuclear chromosome
GO:0000795 C synaptonemal complex
GO:0003677 F DNA binding
GO:0003909 F DNA ligase activity
GO:0003910 F DNA ligase (ATP) activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005739 C mitochondrion
GO:0006260 P DNA replication
GO:0006266 P DNA ligation
GO:0006273 P lagging strand elongation
GO:0006281 P DNA repair
GO:0006288 P base-excision repair, DNA ligation
GO:0006302 P double-strand break repair
GO:0006303 P double-strand break repair via nonhomologous end joining
GO:0006310 P DNA recombination
GO:0006974 P cellular response to DNA damage stimulus
GO:0007005 P mitochondrion organization
GO:0007049 P cell cycle
GO:0008270 F zinc ion binding
GO:0016874 F ligase activity
GO:0043504 P mitochondrial DNA repair
GO:0045910 P negative regulation of DNA recombination
GO:0046872 F metal ion binding
GO:0051103 P DNA ligation involved in DNA repair
GO:0051301 P cell division
GO:0070421 C DNA ligase III-XRCC1 complex
GO:0071897 P DNA biosynthetic process
GO:0090298 P negative regulation of mitochondrial DNA replication
GO:0097681 P double-strand break repair via alternative nonhomologous end joining
FPKM:2.07 TPM:1.92
1397 A_BomaMG_comp11671_c0_seq1
546bp
FPKM:2.51 TPM:2.32
1398 A_BomaMG_comp11672_c0_seq1
594bp
asparagine_synthetase_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0004066 F asparagine synthase (glutamine-hydrolyzing) activity
GO:0005524 F ATP binding
GO:0006529 P asparagine biosynthetic process
GO:0006541 P glutamine metabolic process
GO:0008652 P cellular amino acid biosynthetic process
GO:0016874 F ligase activity
GO:0070981 P L-asparagine biosynthetic process
FPKM:2.05 TPM:1.90
1399 A_BomaMG_comp11673_c0_seq1
559bp
PREDICTED:_LOW_QUALITY_PROTEIN:_probable_ATP-dependent_RNA_helicase_DHX35_[Papilio_machaon]
GO:0000166 F nucleotide binding
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005681 C spliceosomal complex
GO:0005737 C cytoplasm
GO:0006396 P RNA processing
GO:0006397 P mRNA processing
GO:0008026 F helicase activity
GO:0008380 P RNA splicing
GO:0016787 F hydrolase activity
GO:0044822 F RNA binding
GO:0071013 C catalytic step 2 spliceosome
FPKM:2.51 TPM:2.33
1400 A_BomaMG_comp11674_c0_seq1
1601bp
PREDICTED:_F-box/WD_repeat-containing_protein_9-like_[Amyelois_transitella]
FPKM:2.00 TPM:1.85
1401 A_BomaMG_comp11675_c0_seq1
553bp
PREDICTED:_myotubularin-related_protein_5_[Bombyx_mori]
GO:0005085 F guanyl-nucleotide exchange factor activity
GO:0005634 C nucleus
GO:0006470 P protein dephosphorylation
GO:0007283 P spermatogenesis
GO:0008138 F protein tyrosine/serine/threonine phosphatase activity
GO:0016021 C integral component of membrane
GO:0017112 F guanyl-nucleotide exchange factor activity
GO:0019208 F phosphatase regulator activity
GO:0043087 P regulation of GTPase activity
GO:0043547 P positive regulation of GTPase activity
FPKM:2.28 TPM:2.11
1402 A_BomaMG_comp11676_c0_seq1
1564bp
PREDICTED:_probable_tRNA_(guanine(26)-N(2))-dimethyltransferase_isoform_X1_[Bombyx_mori]
GO:0000049 F tRNA binding
GO:0002940 P tRNA N2-guanine methylation
GO:0003723 F RNA binding
GO:0004809 F tRNA (guanine-N2-)-methyltransferase activity
GO:0005634 C nucleus
GO:0005739 C mitochondrion
GO:0008033 P tRNA processing
GO:0008168 F methyltransferase activity
GO:0016740 F transferase activity
GO:0032259 P methylation
FPKM:1.66 TPM:1.54
1403 A_BomaMG_comp11677_c0_seq1
277bp
acetyltransferase_[Pectobacterium_carotovorum]
FPKM:7.62 TPM:7.06
1404 A_BomaMG_comp11678_c0_seq1
460bp
hypothetical_protein_[Paenibacillus_sp._GD6]
FPKM:2.21 TPM:2.05
1405 A_BomaMG_comp11679_c0_seq1
1163bp
PREDICTED:_NFX1-type_zinc_finger-containing_protein_1-like_isoform_X1_[Amyelois_transitella]
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0006355 P regulation of transcription, DNA-templated
GO:0008270 F zinc ion binding
GO:0044822 F RNA binding
GO:0046872 F metal ion binding
FPKM:1.79 TPM:1.66
1406 A_BomaMG_comp1167_c0_seq1
247bp
ABC_transporter_substrate-binding_protein_[Thermus_antranikianii]
FPKM:1.93 TPM:1.79
1407 A_BomaMG_comp11680_c0_seq1
201bp
FPKM:0.00 TPM:0.00
1408 A_BomaMG_comp11681_c0_seq1
421bp
PREDICTED:_gastrula_zinc_finger_protein_XlCGF57.1-like_[Amyelois_transitella]
GO:0001702 P gastrulation with mouth forming second
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007275 P multicellular organism development
GO:0007398 P ectoderm development
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
GO:1903146 P regulation of autophagy of mitochondrion
GO:1903955 P positive regulation of protein targeting to mitochondrion
FPKM:3.82 TPM:3.54
1409 A_BomaMG_comp11681_c1_seq1
1183bp
PREDICTED:_gastrula_zinc_finger_protein_XlCGF57.1-like_[Amyelois_transitella]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0005515 F protein binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
FPKM:2.09 TPM:1.94
1410 A_BomaMG_comp11682_c0_seq1
815bp
PREDICTED:_vacuolar_protein_sorting-associated_protein_13D_[Bombyx_mori]
GO:0005622 C intracellular anatomical structure
GO:0006623 P protein targeting to vacuole
GO:0019898 C extrinsic component of membrane
GO:0045053 P protein retention in Golgi apparatus
GO:0070062 C extracellular exosome
FPKM:2.08 TPM:1.93
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