SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search Assembled RNA-Seq

previous next from show/42653
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
991 A_BomaMSG_c11116_g1_i1
609bp
60S_ribosome_subunit_biogenesis_protein_NIP7_homolog_[Bombyx_mori]
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0042254 P ribosome biogenesis
GO:0042255 P ribosome assembly
FPKM:6.31 TPM:2.82
992 A_BomaMSG_c11117_g1_i1
224bp
FPKM:10.63 TPM:4.75
993 A_BomaMSG_c11118_g1_i1
315bp
FPKM:3.26 TPM:1.45
994 A_BomaMSG_c11119_g1_i1
583bp
FPKM:6.06 TPM:2.71
995 A_BomaMSG_c1111_g1_i1
614bp
Yokozuna_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0004190 F aspartic-type endopeptidase activity
GO:0005524 F ATP binding
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0008270 F zinc ion binding
GO:0015074 P DNA integration
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
FPKM:2.61 TPM:1.17
996 A_BomaMSG_c11120_g1_i1
222bp
coiled-coil_domain-containing_protein_97_[Bombyx_mori]
GO:0005686 C U2 snRNP
FPKM:0.00 TPM:0.00
997 A_BomaMSG_c11120_g1_i2
470bp
coiled-coil_domain-containing_protein_97_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005686 C U2 snRNP
GO:0008150 P biological_process
FPKM:5.26 TPM:2.35
998 A_BomaMSG_c11122_g1_i1
334bp
FPKM:1.83 TPM:0.82
999 A_BomaMSG_c11124_g1_i1
735bp
uncharacterized_protein_LOC101740483_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0008150 P biological_process
FPKM:4.14 TPM:1.85
1000 A_BomaMSG_c11125_g1_i1
321bp
FPKM:8.25 TPM:3.69
1001 A_BomaMSG_c11126_g1_i1
551bp
vacuolar_protein_sorting-associated_protein_51_homolog_[Bombyx_mori]
GO:0000938 C GARP complex
GO:0005768 C endosome
GO:0005794 C Golgi apparatus
GO:0005829 C cytosol
GO:0006810 P transport
GO:0006869 P lipid transport
GO:0015031 P protein transport
GO:0032456 P endocytic recycling
GO:0042147 P retrograde transport, endosome to Golgi
GO:0055037 C recycling endosome
GO:1990745 C EARP complex
FPKM:3.19 TPM:1.43
1002 A_BomaMSG_c11127_g1_i1
327bp
WASH_complex_subunit_4_isoform_X2_[Bombyx_mori]
GO:0005654 C nucleoplasm
GO:0005768 C endosome
GO:0005769 C early endosome
GO:0006810 P transport
GO:0007032 P endosome organization
GO:0015031 P protein transport
GO:0016197 P endosomal transport
GO:0031083 C BLOC-1 complex
GO:0071203 C WASH complex
FPKM:10.25 TPM:4.58
1003 A_BomaMSG_c11128_g1_i1
499bp
methyltransferase-like_protein_16_homolog_isoform_X2_[Bombyx_mori]
FPKM:2.31 TPM:1.03
1004 A_BomaMSG_c11129_g1_i1
650bp
FPKM:2.56 TPM:1.14
1005 A_BomaMSG_c1112_g1_i1
279bp
FPKM:8.31 TPM:3.71
1006 A_BomaMSG_c11130_g1_i1
359bp
FPKM:13.83 TPM:6.18
1007 A_BomaMSG_c11131_g1_i1
341bp
putative_tRNA_threonylcarbamoyladenosine_biosynthesis_protein_CG14231_[Papilio_machaon]
GO:0000408 C EKC/KEOPS complex
GO:0002949 P tRNA threonylcarbamoyladenosine modification
GO:0004222 F metalloendopeptidase activity
GO:0005739 C mitochondrion
GO:0006508 P proteolysis
GO:0008033 P tRNA processing
GO:0016740 F transferase activity
GO:0016746 F acyltransferase activity
GO:0046872 F metal ion binding
GO:0061711 F N(6)-L-threonylcarbamoyladenine synthase activity
FPKM:5.98 TPM:2.67
1008 A_BomaMSG_c11132_g1_i1
326bp
hypothetical_protein_[Acinetobacter_baumannii]
FPKM:7.25 TPM:3.24
1009 A_BomaMSG_c11133_g1_i1
365bp
histone-lysine_N-methyltransferase_trithorax_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007275 P multicellular organism development
GO:0008168 F methyltransferase activity
GO:0008270 F zinc ion binding
GO:0016568 P chromatin organization
GO:0016740 F transferase activity
GO:0018024 F histone-lysine N-methyltransferase activity
GO:0032259 P methylation
GO:0035097 C histone methyltransferase complex
GO:0042800 F histone methyltransferase activity (H3-K4 specific)
GO:0043565 F sequence-specific DNA binding
GO:0046872 F metal ion binding
GO:0051568 P histone H3-K4 methylation
FPKM:4.06 TPM:1.82
1010 A_BomaMSG_c11134_g1_i1
571bp
FPKM:1.92 TPM:0.86
1011 A_BomaMSG_c11135_g1_i1
392bp
LOW_QUALITY_PROTEIN:_histone-lysine_N-methyltransferase_2C_[Bombyx_mori]
FPKM:2.50 TPM:1.12
1012 A_BomaMSG_c11135_g1_i2
301bp
LOW_QUALITY_PROTEIN:_histone-lysine_N-methyltransferase_2C_[Bombyx_mori]
FPKM:0.00 TPM:0.00
1013 A_BomaMSG_c11136_g1_i1
278bp
FPKM:3.66 TPM:1.64
1014 A_BomaMSG_c11137_g1_i1
731bp
CCR4-NOT_transcription_complex_subunit_10_isoform_X1_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006417 P regulation of translation
GO:0016020 C membrane
GO:0030014 C CCR4-NOT complex
GO:0031047 P gene silencing by RNA
FPKM:3.59 TPM:1.61
1015 A_BomaMSG_c11137_g2_i1
320bp
CCR4-NOT_transcription_complex_subunit_10_isoform_X1_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006402 P mRNA catabolic process
GO:0006417 P regulation of translation
GO:0017148 P negative regulation of translation
GO:0030014 C CCR4-NOT complex
GO:0031047 P gene silencing by RNA
FPKM:4.74 TPM:2.12
1016 A_BomaMSG_c11138_g1_i1
332bp
FPKM:11.81 TPM:5.28
1017 A_BomaMSG_c11139_g1_i1
391bp
FPKM:12.83 TPM:5.74
1018 A_BomaMSG_c1113_g1_i1
328bp
probable_ATP-dependent_RNA_helicase_DHX34_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000956 P nuclear-transcribed mRNA catabolic process
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005739 C mitochondrion
GO:0006396 P RNA processing
GO:0016020 C membrane
GO:0016787 F hydrolase activity
GO:0044822 F RNA binding
GO:2000623 P negative regulation of nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
FPKM:3.02 TPM:1.35
1019 A_BomaMSG_c11141_g1_i1
331bp
FPKM:4.08 TPM:1.82
1020 A_BomaMSG_c11142_g1_i1
325bp
uncharacterized_protein_LOC101739231_[Bombyx_mori]
FPKM:2.30 TPM:1.03
previous next from show/42653

- SilkBase 1999-2023 -