SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search Assembled RNA-Seq

previous next from show/42653
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
1021 A_BomaMSG_c11142_g1_i2
273bp
uncharacterized_protein_LOC101739231_[Bombyx_mori]
FPKM:0.00 TPM:0.00
1022 A_BomaMSG_c11143_g1_i1
746bp
kelch-like_protein_diablo_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0003779 F actin binding
GO:0005575 C cellular_component
GO:0016049 P cell growth
GO:0016567 P protein ubiquitination
GO:0050807 P regulation of synapse organization
FPKM:4.41 TPM:1.97
1023 A_BomaMSG_c11144_g1_i1
252bp
LOW_QUALITY_PROTEIN:_lipase_1_[Bombyx_mori]
GO:0005576 C extracellular region
GO:0006629 P lipid metabolic process
GO:0007586 P digestion
GO:0016042 P lipid catabolic process
GO:0016298 F lipase activity
GO:0016787 F hydrolase activity
GO:0016788 F hydrolase activity, acting on ester bonds
FPKM:4.57 TPM:2.04
1024 A_BomaMSG_c11146_g1_i1
470bp
FPKM:6.31 TPM:2.82
1025 A_BomaMSG_c11147_g1_i1
551bp
PREDICTED:_inactive_peptidyl-prolyl_cis-trans_isomerase_shutdown-like_[Plutella_xylostella]
GO:0000413 P protein peptidyl-prolyl isomerization
GO:0003755 F peptidyl-prolyl cis-trans isomerase activity
GO:0005528 F FK506 binding
GO:0005737 C cytoplasm
GO:0005789 C endoplasmic reticulum membrane
GO:0006457 P protein folding
GO:0030154 P cell differentiation
GO:0031047 P gene silencing by RNA
GO:0034587 P piRNA metabolic process
GO:0043186 C P granule
GO:0048477 P oogenesis
GO:0051321 P meiotic cell cycle
GO:0061077 P chaperone-mediated protein folding
GO:0070725 C Yb body
FPKM:2.01 TPM:0.90
1026 A_BomaMSG_c11148_g1_i1
314bp
transportin-1_[Bombyx_mori]
GO:0000059 P obsolete protein import into nucleus, docking
GO:0000060 P obsolete protein import into nucleus, translocation
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006607 P NLS-bearing protein import into nucleus
GO:0006610 P ribosomal protein import into nucleus
GO:0006810 P transport
GO:0006886 P intracellular protein transport
GO:0008139 F nuclear localization sequence binding
GO:0008536 F small GTPase binding
GO:0008565 F obsolete protein transporter activity
GO:0015031 P protein transport
GO:0016032 P viral process
GO:0031965 C nuclear membrane
GO:0034399 C nuclear periphery
GO:0043488 P regulation of mRNA stability
GO:0044822 F RNA binding
GO:0070062 C extracellular exosome
GO:0072372 C cilium
FPKM:2.05 TPM:0.91
1027 A_BomaMSG_c11149_g1_i1
353bp
LOW_QUALITY_PROTEIN:_histone_deacetylase_4_[Bombyx_mori]
FPKM:4.30 TPM:1.92
1028 A_BomaMSG_c1114_g1_i1
418bp
uncharacterized_protein_LOC101743393_[Bombyx_mori]
FPKM:4.52 TPM:2.02
1029 A_BomaMSG_c11150_g1_i1
781bp
RING_finger_and_SPRY_domain-containing_protein_1_isoform_X1_[Bombyx_mori]
GO:0005576 C extracellular region
GO:0008270 F zinc ion binding
GO:0046872 F metal ion binding
FPKM:3.73 TPM:1.67
1030 A_BomaMSG_c11151_g1_i1
452bp
putative_uncharacterized_protein_DDB_G0282499_[Bombyx_mori]
FPKM:2.23 TPM:1.00
1031 A_BomaMSG_c11152_g1_i1
847bp
potassium_channel_subfamily_K_member_3_[Bombyx_mori]
FPKM:3.19 TPM:1.42
1032 A_BomaMSG_c11153_g1_i1
224bp
FPKM:16.83 TPM:7.52
1033 A_BomaMSG_c11154_g1_i1
336bp
FPKM:4.33 TPM:1.94
1034 A_BomaMSG_c11155_g1_i1
296bp
ribosome-associated_membrane_protein_4_[Bombyx_mori]
GO:0001501 P skeletal system development
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0005881 C cytoplasmic microtubule
GO:0006006 P glucose metabolic process
GO:0006486 P protein glycosylation
GO:0006810 P transport
GO:0009791 P post-embryonic development
GO:0010259 P multicellular organism aging
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030968 P endoplasmic reticulum unfolded protein response
GO:0032024 P positive regulation of insulin secretion
GO:0045727 P positive regulation of translation
GO:0046622 P positive regulation of organ growth
GO:0048644 P muscle organ morphogenesis
GO:0060124 P positive regulation of growth hormone secretion
FPKM:3.68 TPM:1.64
1035 A_BomaMSG_c11156_g1_i1
595bp
zinc_finger_protein_436_[Bombyx_mori]
FPKM:2.57 TPM:1.15
1036 A_BomaMSG_c11156_g1_i2
390bp
zinc_finger_protein_436_[Bombyx_mori]
FPKM:0.00 TPM:0.00
1037 A_BomaMSG_c11157_g1_i1
983bp
uncharacterized_protein_LOC101739231_[Bombyx_mori]
FPKM:4.85 TPM:2.17
1038 A_BomaMSG_c11158_g1_i1
345bp
cleavage_and_polyadenylation_specificity_factor_subunit_1_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005847 C mRNA cleavage and polyadenylation specificity factor complex
GO:0006378 P mRNA polyadenylation
GO:0006379 P mRNA cleavage
GO:0006397 P mRNA processing
GO:0019899 F enzyme binding
GO:0035925 F mRNA 3'-UTR AU-rich region binding
FPKM:5.17 TPM:2.31
1039 A_BomaMSG_c11159_g1_i1
495bp
FPKM:2.54 TPM:1.13
1040 A_BomaMSG_c11160_g1_i1
567bp
PREDICTED:_116_kDa_U5_small_nuclear_ribonucleoprotein_component-like_[Eufriesea_mexicana]
GO:0000166 F nucleotide binding
GO:0003924 F GTPase activity
GO:0005525 F GTP binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005737 C cytoplasm
GO:0006397 P mRNA processing
GO:0006412 P translation
GO:0008380 P RNA splicing
GO:0015030 C Cajal body
GO:0016020 C membrane
GO:0016607 C nuclear speck
GO:0044822 F RNA binding
GO:0071013 C catalytic step 2 spliceosome
FPKM:2.91 TPM:1.30
1041 A_BomaMSG_c11161_g1_i1
421bp
FPKM:3.99 TPM:1.78
1042 A_BomaMSG_c11162_g1_i1
315bp
protein_fem-1_homolog_CG6966_isoform_X3_[Bombyx_mori]
GO:0004842 F ubiquitin-protein transferase activity
GO:0005737 C cytoplasm
GO:0016567 P protein ubiquitination
GO:0051438 P regulation of ubiquitin-protein transferase activity
FPKM:3.26 TPM:1.45
1043 A_BomaMSG_c11163_g1_i1
485bp
hypothetical_protein_RR48_06353_[Papilio_machaon]
FPKM:13.26 TPM:5.92
1044 A_BomaMSG_c11164_g1_i1
254bp
FPKM:0.00 TPM:0.00
1045 A_BomaMSG_c11165_g1_i1
276bp
FPKM:4.25 TPM:1.90
1046 A_BomaMSG_c11166_g1_i1
916bp
Zinc_finger_MYM-type_protein_1,_partial_[Stegodyphus_mimosarum]
GO:0000981 F DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0008270 F zinc ion binding
GO:0046872 F metal ion binding
GO:0046983 F protein dimerization activity
FPKM:1.85 TPM:0.82
1047 A_BomaMSG_c11167_g1_i1
738bp
ATP-binding_cassette_sub-family_D_member_2_[Bombyx_mori]
GO:0000038 P very long-chain fatty acid metabolic process
GO:0000166 F nucleotide binding
GO:0005324 F long-chain fatty acid transporter activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005777 C peroxisome
GO:0005778 C peroxisomal membrane
GO:0005829 C cytosol
GO:0006635 P fatty acid beta-oxidation
GO:0006810 P transport
GO:0015909 P long-chain fatty acid transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016887 F ATP hydrolysis activity
GO:0032000 P positive regulation of fatty acid beta-oxidation
GO:0042626 F ATPase-coupled transmembrane transporter activity
GO:0042760 P very long-chain fatty acid catabolic process
GO:0042803 F protein homodimerization activity
GO:0043231 C intracellular membrane-bounded organelle
GO:0055085 P transmembrane transport
FPKM:2.98 TPM:1.33
1048 A_BomaMSG_c11168_g1_i1
246bp
FPKM:1.39 TPM:0.62
1049 A_BomaMSG_c11169_g1_i1
347bp
FPKM:2.39 TPM:1.07
1050 A_BomaMSG_c1116_g1_i1
370bp
FPKM:4.28 TPM:1.91
previous next from show/42653

- SilkBase 1999-2023 -