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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
931 A_BomaMSG_c11040_g1_i1
265bp
KAT8_regulatory_NSL_complex_subunit_1-like_protein_isoform_X2_[Bombyx_mori]
GO:0000123 C histone acetyltransferase complex
GO:0000775 C chromosome, centromeric region
GO:0000776 C kinetochore
GO:0000777 C kinetochore
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005694 C chromosome
GO:0016568 P chromatin organization
GO:0043981 P histone H4-K5 acetylation
GO:0043982 P histone H4-K8 acetylation
GO:0043984 P histone H4-K16 acetylation
GO:0043995 F histone acetyltransferase activity (H4-K5 specific)
GO:0043996 F histone acetyltransferase activity (H4-K8 specific)
GO:0046972 F histone acetyltransferase activity (H4-K16 specific)
GO:0071339 C MLL1 complex
FPKM:2.91 TPM:1.30
932 A_BomaMSG_c11042_g1_i1
770bp
complexin_isoform_X1_[Bombyx_mori]
GO:0005326 F neurotransmitter transmembrane transporter activity
GO:0005829 C cytosol
GO:0006810 P transport
GO:0006836 P neurotransmitter transport
GO:0006887 P exocytosis
GO:0007274 P neuromuscular synaptic transmission
GO:0016020 C membrane
GO:0016079 P synaptic vesicle exocytosis
GO:0019905 F syntaxin binding
GO:0031594 C neuromuscular junction
GO:0043195 C terminal bouton
GO:0046928 P regulation of neurotransmitter secretion
GO:0048786 C presynaptic active zone
GO:0050804 P modulation of chemical synaptic transmission
GO:0051124 P synaptic assembly at neuromuscular junction
FPKM:7.06 TPM:3.16
933 A_BomaMSG_c11042_g1_i2
1092bp
complexin_isoform_X1_[Bombyx_mori]
GO:0005326 F neurotransmitter transmembrane transporter activity
GO:0005829 C cytosol
GO:0006810 P transport
GO:0006836 P neurotransmitter transport
GO:0006887 P exocytosis
GO:0007274 P neuromuscular synaptic transmission
GO:0016020 C membrane
GO:0016079 P synaptic vesicle exocytosis
GO:0019905 F syntaxin binding
GO:0031594 C neuromuscular junction
GO:0043195 C terminal bouton
GO:0046928 P regulation of neurotransmitter secretion
GO:0048786 C presynaptic active zone
GO:0050804 P modulation of chemical synaptic transmission
GO:0051124 P synaptic assembly at neuromuscular junction
FPKM:27.87 TPM:12.45
934 A_BomaMSG_c11043_g1_i1
323bp
small_RNA_2'-O-methyltransferase_[Bombyx_mori]
GO:0001510 P RNA methylation
GO:0003723 F RNA binding
GO:0008168 F methyltransferase activity
GO:0008171 F O-methyltransferase activity
GO:0008173 F RNA methyltransferase activity
GO:0016740 F transferase activity
GO:0030422 P production of siRNA involved in RNA interference
GO:0031047 P gene silencing by RNA
GO:0032259 P methylation
GO:0034587 P piRNA metabolic process
GO:0035194 P post-transcriptional gene silencing by RNA
GO:0046872 F metal ion binding
FPKM:1.94 TPM:0.87
935 A_BomaMSG_c11044_g1_i1
251bp
FPKM:0.00 TPM:0.00
936 A_BomaMSG_c11044_g1_i2
360bp
FPKM:3.37 TPM:1.50
937 A_BomaMSG_c11044_g1_i3
240bp
FPKM:1.07 TPM:0.48
938 A_BomaMSG_c11045_g1_i1
1889bp
dolichyl-diphosphooligosaccharide--protein_glycosyltransferase_subunit_1_[Bombyx_mori]
GO:0004579 F dolichyl-diphosphooligosaccharide-protein glycotransferase activity
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0006486 P protein glycosylation
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016740 F transferase activity
GO:0016757 F glycosyltransferase activity
GO:0042470 C melanosome
FPKM:90.88 TPM:40.61
939 A_BomaMSG_c11046_g1_i1
1086bp
protein_SEC13_homolog_[Bombyx_mori]
GO:0000776 C kinetochore
GO:0005634 C nucleus
GO:0005635 C nuclear envelope
GO:0005643 C nuclear pore
GO:0005654 C nucleoplasm
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0006810 P transport
GO:0006888 P endoplasmic reticulum to Golgi vesicle-mediated transport
GO:0012507 C ER to Golgi transport vesicle membrane
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016192 P vesicle-mediated transport
GO:0031080 C nuclear pore outer ring
GO:0031410 C cytoplasmic vesicle
GO:0032008 P positive regulation of TOR signaling
GO:0043231 C intracellular membrane-bounded organelle
GO:0051028 P mRNA transport
GO:0061700 C GATOR2 complex
GO:0070062 C extracellular exosome
FPKM:105.67 TPM:47.22
940 A_BomaMSG_c11047_g1_i1
395bp
endonuclease_and_reverse_transcriptase-like_protein_[Bombyx_mori]
FPKM:2.20 TPM:0.98
941 A_BomaMSG_c11048_g1_i1
311bp
olfactory_receptor_[Bombyx_mori]
FPKM:3.75 TPM:1.68
942 A_BomaMSG_c11048_g1_i2
582bp
FPKM:1.14 TPM:0.51
943 A_BomaMSG_c11048_g1_i3
601bp
FPKM:3.24 TPM:1.45
944 A_BomaMSG_c11049_g1_i1
3133bp
alanine--tRNA_ligase,_cytoplasmic_[Bombyx_mori]
GO:0000049 F tRNA binding
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0004812 F aminoacyl-tRNA ligase activity
GO:0004813 F alanine-tRNA ligase activity
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0006412 P translation
GO:0006419 P alanyl-tRNA aminoacylation
GO:0016874 F ligase activity
GO:0016876 F aminoacyl-tRNA ligase activity
GO:0043039 P tRNA aminoacylation
GO:0046872 F metal ion binding
FPKM:62.83 TPM:28.08
945 A_BomaMSG_c1104_g1_i1
266bp
FPKM:2.88 TPM:1.29
946 A_BomaMSG_c11050_g1_i1
350bp
phospholipase_C_gamma_isoform_X1_[Bombyx_mori]
GO:0001701 P in utero embryonic development
GO:0001726 C ruffle
GO:0002223 P stimulatory C-type lectin receptor signaling pathway
GO:0004435 F phosphatidylinositol phospholipase C activity
GO:0004871 F obsolete signal transducer activity
GO:0005168 F neurotrophin TRKA receptor binding
GO:0005509 F calcium ion binding
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0005911 C cell-cell junction
GO:0006629 P lipid metabolic process
GO:0007165 P signal transduction
GO:0007173 P epidermal growth factor receptor signaling pathway
GO:0008081 F phosphoric diester hydrolase activity
GO:0008180 C COP9 signalosome
GO:0009395 P phospholipid catabolic process
GO:0010634 P positive regulation of epithelial cell migration
GO:0016042 P lipid catabolic process
GO:0016477 P cell migration
GO:0016787 F hydrolase activity
GO:0019722 P calcium-mediated signaling
GO:0019901 F protein kinase binding
GO:0030027 C lamellipodium
GO:0030971 F receptor tyrosine kinase binding
GO:0035254 F glutamate receptor binding
GO:0035556 P intracellular signal transduction
GO:0042995 C cell projection
GO:0043536 P positive regulation of blood vessel endothelial cell migration
GO:0045766 P positive regulation of angiogenesis
GO:0046872 F metal ion binding
GO:0050852 P T cell receptor signaling pathway
GO:0051281 P positive regulation of release of sequestered calcium ion into cytosol
GO:0071364 P cellular response to epidermal growth factor stimulus
FPKM:3.36 TPM:1.50
947 A_BomaMSG_c11051_g1_i1
1232bp
probable_ubiquitin_carboxyl-terminal_hydrolase_creB_[Bombyx_mori]
GO:0001501 P skeletal system development
GO:0004197 F cysteine-type endopeptidase activity
GO:0004843 F thiol-dependent deubiquitinase
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006281 P DNA repair
GO:0006282 P regulation of DNA repair
GO:0006508 P proteolysis
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0006974 P cellular response to DNA damage stimulus
GO:0008233 F peptidase activity
GO:0008234 F cysteine-type peptidase activity
GO:0009411 P response to UV
GO:0016579 P protein deubiquitination
GO:0016787 F hydrolase activity
GO:0035520 P monoubiquitinated protein deubiquitination
GO:0036297 P interstrand cross-link repair
GO:0036459 F thiol-dependent deubiquitinase
GO:0042769 P obsolete DNA damage response, detection of DNA damage
FPKM:2.18 TPM:0.97
948 A_BomaMSG_c11052_g1_i1
933bp
ubiquitin_carboxyl-terminal_hydrolase_[Bombyx_mori]
GO:0004843 F thiol-dependent deubiquitinase
GO:0005622 C intracellular anatomical structure
GO:0005737 C cytoplasm
GO:0005875 C microtubule associated complex
GO:0006508 P proteolysis
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0008233 F peptidase activity
GO:0008234 F cysteine-type peptidase activity
GO:0016579 P protein deubiquitination
GO:0016787 F hydrolase activity
GO:0036459 F thiol-dependent deubiquitinase
FPKM:32.28 TPM:14.43
949 A_BomaMSG_c11052_g1_i2
867bp
ubiquitin_carboxyl-terminal_hydrolase_[Bombyx_mori]
GO:0004843 F thiol-dependent deubiquitinase
GO:0005622 C intracellular anatomical structure
GO:0005737 C cytoplasm
GO:0005875 C microtubule associated complex
GO:0006508 P proteolysis
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0008233 F peptidase activity
GO:0008234 F cysteine-type peptidase activity
GO:0016579 P protein deubiquitination
GO:0016787 F hydrolase activity
GO:0036459 F thiol-dependent deubiquitinase
FPKM:4.09 TPM:1.83
950 A_BomaMSG_c11054_g1_i1
907bp
low-density_lipoprotein_receptor-related_protein_6_[Bombyx_mori]
GO:0001843 P neural tube closure
GO:0001933 P negative regulation of protein phosphorylation
GO:0003344 P pericardium morphogenesis
GO:0005041 F low-density lipoprotein particle receptor activity
GO:0005102 F signaling receptor binding
GO:0005109 F frizzled binding
GO:0005515 F protein binding
GO:0005576 C extracellular region
GO:0005769 C early endosome
GO:0005783 C endoplasmic reticulum
GO:0005794 C Golgi apparatus
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0005901 C caveola
GO:0006355 P regulation of transcription, DNA-templated
GO:0006469 P negative regulation of protein kinase activity
GO:0006897 P endocytosis
GO:0007204 P positive regulation of cytosolic calcium ion concentration
GO:0007268 P chemical synaptic transmission
GO:0007275 P multicellular organism development
GO:0009880 P embryonic pattern specification
GO:0009986 C cell surface
GO:0014029 P neural crest formation
GO:0014033 P neural crest cell differentiation
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016055 P Wnt signaling pathway
GO:0016337 P cell-cell adhesion
GO:0017147 F Wnt-protein binding
GO:0019210 F kinase inhibitor activity
GO:0019534 F toxin transmembrane transporter activity
GO:0021587 P cerebellum morphogenesis
GO:0021794 P thalamus development
GO:0021987 P cerebral cortex development
GO:0030917 P midbrain-hindbrain boundary development
GO:0031410 C cytoplasmic vesicle
GO:0031901 C early endosome membrane
GO:0034185 F apolipoprotein binding
GO:0034392 P negative regulation of smooth muscle cell apoptotic process
GO:0035261 P external genitalia morphogenesis
GO:0042475 P odontogenesis of dentin-containing tooth
GO:0042802 F identical protein binding
GO:0042803 F protein homodimerization activity
GO:0042813 F Wnt-activated receptor activity
GO:0043025 C neuronal cell body
GO:0043235 C receptor complex
GO:0043434 P response to peptide hormone
GO:0044332 P Wnt signaling pathway involved in dorsal/ventral axis specification
GO:0044335 P canonical Wnt signaling pathway involved in neural crest cell differentiation
GO:0044340 P canonical Wnt signaling pathway involved in regulation of cell proliferation
GO:0045202 C synapse
GO:0045787 P positive regulation of cell cycle
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0051091 P positive regulation of DNA-binding transcription factor activity
GO:0060021 P roof of mouth development
GO:0060026 P convergent extension
GO:0060059 P embryonic retina morphogenesis in camera-type eye
GO:0060070 P canonical Wnt signaling pathway
GO:0060325 P face morphogenesis
GO:0060535 P trachea cartilage morphogenesis
GO:0071397 P cellular response to cholesterol
GO:0071542 P dopaminergic neuron differentiation
GO:0071901 P negative regulation of protein serine/threonine kinase activity
GO:0071936 F coreceptor activity involved in Wnt signaling pathway
GO:0072659 P protein localization to plasma membrane
GO:0090009 P primitive streak formation
GO:0090090 P negative regulation of canonical Wnt signaling pathway
GO:0090118 P receptor-mediated endocytosis involved in cholesterol transport
GO:0090244 P Wnt signaling pathway involved in somitogenesis
GO:0090245 P axis elongation involved in somitogenesis
GO:0090263 P positive regulation of canonical Wnt signaling pathway
GO:1901998 P toxin transport
GO:1904886 P beta-catenin destruction complex disassembly
GO:1904928 F coreceptor activity involved in canonical Wnt signaling pathway
GO:1904948 P midbrain dopaminergic neuron differentiation
GO:1904953 P Wnt signaling pathway involved in midbrain dopaminergic neuron differentiation
GO:1990851 C Wnt-Frizzled-LRP5/6 complex
GO:1990909 C Wnt signalosome
GO:2000055 P positive regulation of Wnt signaling pathway involved in dorsal/ventral axis specification
FPKM:4.71 TPM:2.11
951 A_BomaMSG_c11054_g1_i2
346bp
low-density_lipoprotein_receptor-related_protein_6_[Bombyx_mori]
GO:0001702 P gastrulation with mouth forming second
GO:0001756 P somitogenesis
GO:0001843 P neural tube closure
GO:0001933 P negative regulation of protein phosphorylation
GO:0001947 P heart looping
GO:0002053 P positive regulation of mesenchymal cell proliferation
GO:0003344 P pericardium morphogenesis
GO:0003401 P axis elongation
GO:0005041 F low-density lipoprotein particle receptor activity
GO:0005102 F signaling receptor binding
GO:0005109 F frizzled binding
GO:0005515 F protein binding
GO:0005769 C early endosome
GO:0005783 C endoplasmic reticulum
GO:0005794 C Golgi apparatus
GO:0005886 C plasma membrane
GO:0005901 C caveola
GO:0006469 P negative regulation of protein kinase activity
GO:0006897 P endocytosis
GO:0007268 P chemical synaptic transmission
GO:0007275 P multicellular organism development
GO:0009880 P embryonic pattern specification
GO:0009950 P dorsal/ventral axis specification
GO:0009952 P anterior/posterior pattern specification
GO:0009986 C cell surface
GO:0014029 P neural crest formation
GO:0014033 P neural crest cell differentiation
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016055 P Wnt signaling pathway
GO:0017147 F Wnt-protein binding
GO:0019210 F kinase inhibitor activity
GO:0019534 F toxin transmembrane transporter activity
GO:0021587 P cerebellum morphogenesis
GO:0021794 P thalamus development
GO:0021795 P cerebral cortex cell migration
GO:0021861 P forebrain radial glial cell differentiation
GO:0021872 P forebrain generation of neurons
GO:0021874 P Wnt signaling pathway involved in forebrain neuroblast division
GO:0021915 P neural tube development
GO:0021943 P formation of radial glial scaffolds
GO:0021987 P cerebral cortex development
GO:0030178 P negative regulation of Wnt signaling pathway
GO:0030326 P embryonic limb morphogenesis
GO:0030900 P forebrain development
GO:0030901 P midbrain development
GO:0030917 P midbrain-hindbrain boundary development
GO:0031410 C cytoplasmic vesicle
GO:0034392 P negative regulation of smooth muscle cell apoptotic process
GO:0035108 P limb morphogenesis
GO:0035115 P embryonic forelimb morphogenesis
GO:0035116 P embryonic hindlimb morphogenesis
GO:0035261 P external genitalia morphogenesis
GO:0036342 P post-anal tail morphogenesis
GO:0042074 P cell migration involved in gastrulation
GO:0042127 P regulation of cell population proliferation
GO:0042475 P odontogenesis of dentin-containing tooth
GO:0042733 P embryonic digit morphogenesis
GO:0042802 F identical protein binding
GO:0042803 F protein homodimerization activity
GO:0042813 F Wnt-activated receptor activity
GO:0043025 C neuronal cell body
GO:0043065 P positive regulation of apoptotic process
GO:0043235 C receptor complex
GO:0044332 P Wnt signaling pathway involved in dorsal/ventral axis specification
GO:0045202 C synapse
GO:0045599 P negative regulation of fat cell differentiation
GO:0045778 P positive regulation of ossification
GO:0045780 P positive regulation of bone resorption
GO:0045787 P positive regulation of cell cycle
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046849 P bone remodeling
GO:0048596 P embryonic camera-type eye morphogenesis
GO:0048699 P generation of neurons
GO:0048705 P skeletal system morphogenesis
GO:0050680 P negative regulation of epithelial cell proliferation
GO:0051091 P positive regulation of DNA-binding transcription factor activity
GO:0051593 P response to folic acid
GO:0060021 P roof of mouth development
GO:0060026 P convergent extension
GO:0060042 P retina morphogenesis in camera-type eye
GO:0060059 P embryonic retina morphogenesis in camera-type eye
GO:0060070 P canonical Wnt signaling pathway
GO:0060284 P regulation of cell development
GO:0060325 P face morphogenesis
GO:0060444 P branching involved in mammary gland duct morphogenesis
GO:0060535 P trachea cartilage morphogenesis
GO:0060596 P mammary placode formation
GO:0060603 P mammary gland duct morphogenesis
GO:0061310 P canonical Wnt signaling pathway involved in cardiac neural crest cell differentiation involved in heart development
GO:0061324 P canonical Wnt signaling pathway involved in positive regulation of cardiac outflow tract cell proliferation
GO:0071397 P cellular response to cholesterol
GO:0071542 P dopaminergic neuron differentiation
GO:0071901 P negative regulation of protein serine/threonine kinase activity
GO:0071936 F coreceptor activity involved in Wnt signaling pathway
GO:0072659 P protein localization to plasma membrane
GO:0090009 P primitive streak formation
GO:0090118 P receptor-mediated endocytosis involved in cholesterol transport
GO:0090244 P Wnt signaling pathway involved in somitogenesis
GO:0090245 P axis elongation involved in somitogenesis
GO:0090263 P positive regulation of canonical Wnt signaling pathway
GO:1901998 P toxin transport
GO:1990851 C Wnt-Frizzled-LRP5/6 complex
GO:1990909 C Wnt signalosome
GO:2000051 P negative regulation of non-canonical Wnt signaling pathway
GO:2000055 P positive regulation of Wnt signaling pathway involved in dorsal/ventral axis specification
GO:2000149 P negative regulation of planar cell polarity pathway involved in ventricular septum morphogenesis
GO:2000151 P negative regulation of planar cell polarity pathway involved in cardiac muscle tissue morphogenesis
GO:2000162 P negative regulation of planar cell polarity pathway involved in cardiac right atrium morphogenesis
GO:2000164 P negative regulation of planar cell polarity pathway involved in outflow tract morphogenesis
GO:2000166 P negative regulation of planar cell polarity pathway involved in pericardium morphogenesis
GO:2000168 P negative regulation of planar cell polarity pathway involved in neural tube closure
FPKM:0.00 TPM:0.00
952 A_BomaMSG_c11056_g1_i1
318bp
FPKM:9.19 TPM:4.11
953 A_BomaMSG_c11057_g1_i1
1636bp
S-adenosyl-L-homocysteine_hydrolase_[Bombyx_mori]
GO:0004013 F adenosylhomocysteinase activity
GO:0005829 C cytosol
GO:0006730 P one-carbon metabolic process
GO:0016787 F hydrolase activity
GO:0033353 P S-adenosylmethionine cycle
FPKM:43.45 TPM:19.42
954 A_BomaMSG_c1105_g1_i1
572bp
Modifier_of_mdg4_[Operophtera_brumata]
FPKM:3.35 TPM:1.50
955 A_BomaMSG_c11061_g1_i1
396bp
unconventional_myosin-Va_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003774 F cytoskeletal motor activity
GO:0003779 F actin binding
GO:0003824 F catalytic activity
GO:0005516 F calmodulin binding
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005903 C brush border
GO:0006810 P transport
GO:0008152 P metabolic process
GO:0015031 P protein transport
GO:0016192 P vesicle-mediated transport
GO:0016459 C myosin complex
GO:0017137 F small GTPase binding
GO:0032439 P endosomal transport
GO:0043234 C protein-containing complex
GO:0045179 C apical cortex
GO:0070062 C extracellular exosome
FPKM:1.64 TPM:0.73
956 A_BomaMSG_c11063_g1_i1
279bp
uncharacterized_protein_LOC101739942_[Bombyx_mori]
FPKM:2.08 TPM:0.93
957 A_BomaMSG_c11064_g1_i1
232bp
uncharacterized_protein_LOC110377703_isoform_X1_[Helicoverpa_armigera]
FPKM:1.61 TPM:0.72
958 A_BomaMSG_c11065_g1_i1
215bp
FPKM:10.97 TPM:4.90
959 A_BomaMSG_c11070_g1_i1
322bp
microtubule-associated_protein_futsch_[Bombyx_mori]
GO:0000226 P microtubule cytoskeleton organization
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005874 C microtubule
GO:0005875 C microtubule associated complex
GO:0007017 P microtubule-based process
GO:0007275 P multicellular organism development
GO:0007399 P nervous system development
GO:0007409 P axonogenesis
GO:0007528 P neuromuscular junction development
GO:0008017 F microtubule binding
GO:0008088 P axo-dendritic transport
GO:0008355 P olfactory learning
GO:0008582 P regulation of synaptic assembly at neuromuscular junction
GO:0015630 C microtubule cytoskeleton
GO:0019900 F kinase binding
GO:0030424 C axon
GO:0030425 C dendrite
GO:0043025 C neuronal cell body
GO:0043524 P negative regulation of neuron apoptotic process
GO:0048749 P compound eye development
GO:0048813 P dendrite morphogenesis
GO:0060052 P neurofilament cytoskeleton organization
GO:1901215 P negative regulation of neuron death
FPKM:1.56 TPM:0.70
960 A_BomaMSG_c11074_g1_i1
297bp
FPKM:0.00 TPM:0.00
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