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Search Assembled RNA-Seq

No.

Name
Length

Chromosome No./Scaffold Id
Scaffold Length

BLAST (vs nr)

Gene ontology

Transcript
Level

511

A_BomaMSG_c10583_g1_i1

583bp

protein_crumbs_[Bombyx_mori]

GO:0001738	P	morphogenesis of a polarized epithelium
GO:0001745	P	compound eye morphogenesis
GO:0002009	P	morphogenesis of an epithelium
GO:0005080	F	protein kinase C binding
GO:0005509	F	calcium ion binding
GO:0005515	F	protein binding
GO:0005886	C	plasma membrane
GO:0005913	C	adherens junction
GO:0005918	C	septate junction
GO:0007043	P	cell-cell junction assembly
GO:0007163	P	establishment or maintenance of cell polarity
GO:0007275	P	multicellular organism development
GO:0007399	P	nervous system development
GO:0007424	P	open tracheal system development
GO:0007431	P	salivary gland development
GO:0007435	P	salivary gland morphogenesis
GO:0007443	P	Malpighian tubule morphogenesis
GO:0008104	P	protein localization
GO:0008284	P	positive regulation of cell population proliferation
GO:0016020	C	membrane
GO:0016021	C	integral component of membrane
GO:0016028	C	rhabdomere
GO:0016324	C	apical plasma membrane
GO:0016327	C	apicolateral plasma membrane
GO:0016332	P	establishment or maintenance of polarity of embryonic epithelium
GO:0016334	P	establishment or maintenance of polarity of follicular epithelium
GO:0030154	P	cell differentiation
GO:0030507	F	spectrin binding
GO:0032435	P	negative regulation of proteasomal ubiquitin-dependent protein catabolic process
GO:0032880	P	regulation of protein localization
GO:0033157	P	regulation of intracellular protein transport
GO:0034332	P	adherens junction organization
GO:0035002	P	liquid clearance, open tracheal system
GO:0035003	C	subapical complex
GO:0035088	P	establishment or maintenance of apical/basal cell polarity
GO:0035090	P	maintenance of apical/basal cell polarity
GO:0035239	P	tube morphogenesis
GO:0035330	P	regulation of hippo signaling
GO:0042051	P	compound eye photoreceptor development
GO:0042052	P	rhabdomere development
GO:0042327	P	positive regulation of phosphorylation
GO:0045186	P	zonula adherens assembly
GO:0045197	P	establishment or maintenance of epithelial cell apical/basal polarity
GO:0045198	P	establishment of epithelial cell apical/basal polarity
GO:0045218	P	zonula adherens maintenance
GO:0045494	P	photoreceptor cell maintenance
GO:0045570	P	regulation of imaginal disc growth
GO:0045746	P	negative regulation of Notch signaling pathway
GO:0046621	P	negative regulation of organ growth
GO:0046664	P	dorsal closure, amnioserosa morphology change
GO:0048477	P	oogenesis
GO:0050821	P	protein stabilization
GO:0051642	P	centrosome localization
GO:0061024	P	membrane organization
GO:0061336	P	cell morphogenesis involved in Malpighian tubule morphogenesis
GO:0061541	P	rhabdomere morphogenesis
GO:0098813	P	nuclear chromosome segregation

FPKM:4.66 TPM:2.08

512

A_BomaMSG_c10585_g1_i1

962bp

trafficking_protein_particle_complex_subunit_8_[Bombyx_mori]

FPKM:3.90 TPM:1.74

513

A_BomaMSG_c10586_g1_i1

543bp

dynein_assembly_factor_5,_axonemal_[Bombyx_mori]

FPKM:1.37 TPM:0.61

514

A_BomaMSG_c10587_g1_i1

497bp

uncharacterized_protein_LOC101744637_[Bombyx_mori]

FPKM:4.27 TPM:1.91

515

A_BomaMSG_c10588_g1_i1

378bp

beta-secretase_1_[Bombyx_mori]

GO:0001540	F	amyloid-beta binding
GO:0004190	F	aspartic-type endopeptidase activity
GO:0005768	C	endosome
GO:0005783	C	endoplasmic reticulum
GO:0005794	C	Golgi apparatus
GO:0006508	P	proteolysis
GO:0006509	P	membrane protein ectodomain proteolysis
GO:0008233	F	peptidase activity
GO:0009986	C	cell surface
GO:0016020	C	membrane
GO:0016021	C	integral component of membrane
GO:0016787	F	hydrolase activity
GO:0030163	P	protein catabolic process
GO:0042985	P	negative regulation of amyloid precursor protein biosynthetic process
GO:0050435	P	amyloid-beta metabolic process

FPKM:6.49 TPM:2.90

516

A_BomaMSG_c10589_g1_i1

617bp

FPKM:3.46 TPM:1.55

517

A_BomaMSG_c1058_g1_i1

339bp

zinc_finger_protein_62_[Bombyx_mori]

GO:0000122	P	negative regulation of transcription by RNA polymerase II
GO:0003676	F	nucleic acid binding
GO:0003677	F	DNA binding
GO:0003713	F	transcription coactivator activity
GO:0005515	F	protein binding
GO:0005634	C	nucleus
GO:0006351	P	transcription, DNA-templated
GO:0006355	P	regulation of transcription, DNA-templated
GO:0017053	C	transcription repressor complex
GO:0019827	P	stem cell population maintenance
GO:0022008	P	neurogenesis
GO:0030154	P	cell differentiation
GO:0030512	P	negative regulation of transforming growth factor beta receptor signaling pathway
GO:0030853	P	negative regulation of granulocyte differentiation
GO:0033613	F	DNA-binding transcription factor binding
GO:0035019	P	somatic stem cell population maintenance
GO:0043457	P	regulation of cellular respiration
GO:0043565	F	sequence-specific DNA binding
GO:0043586	P	tongue development
GO:0045892	P	negative regulation of transcription, DNA-templated
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0046332	F	SMAD binding
GO:0046872	F	metal ion binding
GO:0050872	P	white fat cell differentiation
GO:0050873	P	brown fat cell differentiation
GO:0060021	P	roof of mouth development
GO:0090336	P	positive regulation of brown fat cell differentiation

FPKM:3.20 TPM:1.43

518

A_BomaMSG_c10590_g1_i1

508bp

uncharacterized_protein_LOC101739757_[Bombyx_mori]

FPKM:4.51 TPM:2.02

519

A_BomaMSG_c10591_g1_i1

388bp

PREDICTED:_coronin-7_[Papilio_polytes]

GO:0000139	C	Golgi membrane
GO:0003779	F	actin binding
GO:0005737	C	cytoplasm
GO:0005794	C	Golgi apparatus
GO:0005802	C	trans-Golgi network
GO:0005829	C	cytosol
GO:0006810	P	transport
GO:0006895	P	Golgi to endosome transport
GO:0015031	P	protein transport
GO:0016020	C	membrane
GO:0016023	C	cytoplasmic vesicle
GO:0030041	P	actin filament polymerization
GO:0031410	C	cytoplasmic vesicle

FPKM:2.54 TPM:1.14

520

A_BomaMSG_c10592_g1_i1

648bp

protein_arginine_N-methyltransferase_7_[Bombyx_mori]

GO:0000387	P	spliceosomal snRNP assembly
GO:0005634	C	nucleus
GO:0005737	C	cytoplasm
GO:0005829	C	cytosol
GO:0006349	P	regulation of gene expression by genomic imprinting
GO:0006351	P	transcription, DNA-templated
GO:0006355	P	regulation of transcription, DNA-templated
GO:0006479	P	protein methylation
GO:0008168	F	methyltransferase activity
GO:0008469	F	histone-arginine N-methyltransferase activity
GO:0008757	F	S-adenosylmethionine-dependent methyltransferase activity
GO:0016277	F	[myelin basic protein]-arginine N-methyltransferase activity
GO:0016568	P	chromatin organization
GO:0016571	P	histone methylation
GO:0016740	F	transferase activity
GO:0018216	P	peptidyl-arginine methylation
GO:0019918	P	peptidyl-arginine methylation, to symmetrical-dimethyl arginine
GO:0019919	P	peptidyl-arginine methylation, to asymmetrical-dimethyl arginine
GO:0030154	P	cell differentiation
GO:0032259	P	methylation
GO:0034969	P	histone arginine methylation
GO:0035241	F	protein-arginine omega-N monomethyltransferase activity
GO:0035242	F	protein-arginine omega-N asymmetric methyltransferase activity
GO:0035243	F	protein-arginine omega-N symmetric methyltransferase activity
GO:0043046	P	DNA methylation involved in gamete generation
GO:0043985	P	histone H4-R3 methylation
GO:0044020	F	histone methyltransferase activity (H4-R3 specific)

FPKM:3.11 TPM:1.39

521

A_BomaMSG_c10592_g1_i2

454bp

protein_arginine_N-methyltransferase_7_[Bombyx_mori]

GO:0005575	C	cellular_component
GO:0005829	C	cytosol
GO:0006355	P	regulation of transcription, DNA-templated
GO:0006479	P	protein methylation
GO:0008168	F	methyltransferase activity
GO:0008469	F	histone-arginine N-methyltransferase activity
GO:0016740	F	transferase activity
GO:0018216	P	peptidyl-arginine methylation
GO:0019918	P	peptidyl-arginine methylation, to symmetrical-dimethyl arginine
GO:0019919	P	peptidyl-arginine methylation, to asymmetrical-dimethyl arginine
GO:0032259	P	methylation
GO:0034969	P	histone arginine methylation
GO:0035241	F	protein-arginine omega-N monomethyltransferase activity
GO:0035242	F	protein-arginine omega-N asymmetric methyltransferase activity
GO:0035243	F	protein-arginine omega-N symmetric methyltransferase activity

FPKM:0.00 TPM:0.00

522

A_BomaMSG_c10593_g1_i1

298bp

pseudouridylate_synthase_7_homolog_[Bombyx_mori]

GO:0001522	P	pseudouridine synthesis
GO:0003723	F	RNA binding
GO:0005634	C	nucleus
GO:0008033	P	tRNA processing
GO:0009451	P	RNA modification
GO:0009982	F	pseudouridine synthase activity
GO:0016853	F	isomerase activity
GO:0019899	F	enzyme binding
GO:0044822	F	RNA binding

FPKM:2.27 TPM:1.01

523

A_BomaMSG_c10594_g1_i1

295bp

FPKM:6.48 TPM:2.89

524

A_BomaMSG_c10595_g1_i1

562bp

uncharacterized_protein_LOC101738872_[Bombyx_mori]

FPKM:3.10 TPM:1.39

525

A_BomaMSG_c10596_g1_i1

879bp

ATP_synthase_[Bombyx_mori]

GO:0000276	C	mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)
GO:0005739	C	mitochondrion
GO:0005743	C	mitochondrial inner membrane
GO:0005811	C	lipid droplet
GO:0006810	P	transport
GO:0006811	P	ion transport
GO:0006909	P	phagocytosis
GO:0015078	F	proton transmembrane transporter activity
GO:0015986	P	ATP synthesis coupled proton transport
GO:0015992	P	proton transmembrane transport
GO:0016020	C	membrane
GO:0045263	C	proton-transporting ATP synthase complex, coupling factor F(o)
GO:0046933	F	proton-transporting ATP synthase activity, rotational mechanism

FPKM:120.06 TPM:53.65

526

A_BomaMSG_c10597_g1_i1

300bp

death_related_ced-3/Nedd2-like_protein_[Bombyx_mori]

GO:0002376	P	immune system process
GO:0004197	F	cysteine-type endopeptidase activity
GO:0005737	C	cytoplasm
GO:0006508	P	proteolysis
GO:0006915	P	apoptotic process
GO:0006919	P	activation of cysteine-type endopeptidase activity involved in apoptotic process
GO:0008233	F	peptidase activity
GO:0008234	F	cysteine-type peptidase activity
GO:0008656	F	cysteine-type endopeptidase activator activity involved in apoptotic process
GO:0016787	F	hydrolase activity
GO:0045087	P	innate immune response
GO:0050829	P	defense response to Gram-negative bacterium

FPKM:5.82 TPM:2.60

527

A_BomaMSG_c10599_g1_i1

760bp

uncharacterized_protein_LOC101741222_isoform_X3_[Bombyx_mori]

FPKM:2.10 TPM:0.94

528

A_BomaMSG_c1059_g1_i1

205bp

FPKM:0.00 TPM:0.00

529

A_BomaMSG_c105_g1_i1

276bp

FPKM:2.13 TPM:0.95

530

A_BomaMSG_c10600_g1_i1

331bp

FPKM:5.57 TPM:2.49

531

A_BomaMSG_c10601_g1_i1

878bp

myosin-IIIb-like_isoform_X2_[Bombyx_mori]

GO:0000146	F	microfilament motor activity
GO:0000166	F	nucleotide binding
GO:0001917	C	photoreceptor inner segment
GO:0003774	F	cytoskeletal motor activity
GO:0003779	F	actin binding
GO:0004672	F	protein kinase activity
GO:0004674	F	protein serine/threonine kinase activity
GO:0005516	F	calmodulin binding
GO:0005524	F	ATP binding
GO:0005737	C	cytoplasm
GO:0005856	C	cytoskeleton
GO:0006468	P	protein phosphorylation
GO:0007601	P	visual perception
GO:0007605	P	sensory perception of sound
GO:0016301	F	kinase activity
GO:0016310	P	phosphorylation
GO:0016459	C	myosin complex
GO:0016740	F	transferase activity
GO:0018105	P	peptidyl-serine phosphorylation
GO:0018107	P	peptidyl-threonine phosphorylation
GO:0030175	C	filopodium
GO:0030898	F	microfilament motor activity
GO:0031941	C	filamentous actin
GO:0032426	C	stereocilium tip
GO:0032433	C	filopodium tip
GO:0043531	F	ADP binding
GO:0046777	P	protein autophosphorylation
GO:0048839	P	inner ear development
GO:0050896	P	response to stimulus
GO:0051015	F	actin filament binding
GO:0051491	P	positive regulation of filopodium assembly
GO:0060002	F	plus-end directed microfilament motor activity

FPKM:2.77 TPM:1.24

532

A_BomaMSG_c10602_g1_i1

274bp

FPKM:6.48 TPM:2.90

533

A_BomaMSG_c10603_g1_i1

593bp

PAB-dependent_poly(A)-specific_ribonuclease_subunit_PAN2_isoform_X3_[Bombyx_mori]

GO:0000288	P	nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:0000289	P	nuclear-transcribed mRNA poly(A) tail shortening
GO:0000932	C	P-body
GO:0003676	F	nucleic acid binding
GO:0004518	F	nuclease activity
GO:0004527	F	exonuclease activity
GO:0004535	F	poly(A)-specific ribonuclease activity
GO:0005737	C	cytoplasm
GO:0006397	P	mRNA processing
GO:0016787	F	hydrolase activity
GO:0031251	C	PAN complex
GO:0090305	P	nucleic acid phosphodiester bond hydrolysis
GO:0090503	P	RNA phosphodiester bond hydrolysis, exonucleolytic

FPKM:5.47 TPM:2.44

534

A_BomaMSG_c10604_g1_i1

270bp

PREDICTED:_uncharacterized_protein_LOC107191251_[Dufourea_novaeangliae]

GO:0003676	F	nucleic acid binding
GO:0003964	F	RNA-directed DNA polymerase activity
GO:0004190	F	aspartic-type endopeptidase activity
GO:0004518	F	nuclease activity
GO:0004519	F	endonuclease activity
GO:0006278	P	RNA-dependent DNA biosynthetic process
GO:0006508	P	proteolysis
GO:0008233	F	peptidase activity
GO:0015074	P	DNA integration
GO:0016740	F	transferase activity
GO:0016779	F	nucleotidyltransferase activity
GO:0016787	F	hydrolase activity
GO:0090305	P	nucleic acid phosphodiester bond hydrolysis

FPKM:5.58 TPM:2.49

535

A_BomaMSG_c10605_g1_i1

673bp

N-sulphoglucosamine_sulphohydrolase_[Bombyx_mori]

GO:0003824	F	catalytic activity
GO:0005764	C	lysosome
GO:0006027	P	glycosaminoglycan catabolic process
GO:0006029	P	proteoglycan metabolic process
GO:0008152	P	metabolic process
GO:0008484	F	sulfuric ester hydrolase activity
GO:0016250	F	N-sulfoglucosamine sulfohydrolase activity
GO:0016787	F	hydrolase activity
GO:0043202	C	lysosomal lumen
GO:0046872	F	metal ion binding
GO:0070062	C	extracellular exosome