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Search Assembled RNA-Seq

No.

Name
Length

Chromosome No./Scaffold Id
Scaffold Length

BLAST (vs nr)

Gene ontology

Transcript
Level

541

A_BomaMSG_c1060_g1_i1

631bp

FPKM:4.76 TPM:2.13

542

A_BomaMSG_c10610_g1_i1

759bp

pyrroline-5-carboxylate_reductase_[Bombyx_mori]

GO:0004735	F	pyrroline-5-carboxylate reductase activity
GO:0005737	C	cytoplasm
GO:0006561	P	proline biosynthetic process
GO:0008652	P	cellular amino acid biosynthetic process
GO:0016491	F	oxidoreductase activity
GO:0055114	P	obsolete oxidation-reduction process
GO:0055129	P	L-proline biosynthetic process

FPKM:3.54 TPM:1.58

543

A_BomaMSG_c10611_g1_i1

441bp

FPKM:11.60 TPM:5.18

544

A_BomaMSG_c10611_g1_i2

310bp

FPKM:3.28 TPM:1.47

545

A_BomaMSG_c10612_g1_i1

616bp

ubiquitin_carboxyl-terminal_hydrolase_34-like_[Bombyx_mori]

GO:0000124	C	SAGA complex
GO:0004197	F	cysteine-type endopeptidase activity
GO:0004843	F	thiol-dependent deubiquitinase
GO:0005515	F	protein binding
GO:0005829	C	cytosol
GO:0006355	P	regulation of transcription, DNA-templated
GO:0006508	P	proteolysis
GO:0006511	P	ubiquitin-dependent protein catabolic process
GO:0008233	F	peptidase activity
GO:0008234	F	cysteine-type peptidase activity
GO:0016055	P	Wnt signaling pathway
GO:0016578	P	histone deubiquitination
GO:0016579	P	protein deubiquitination
GO:0016787	F	hydrolase activity
GO:0036459	F	thiol-dependent deubiquitinase
GO:0071108	P	protein K48-linked deubiquitination
GO:0090263	P	positive regulation of canonical Wnt signaling pathway

FPKM:2.74 TPM:1.23

546

A_BomaMSG_c10614_g1_i1

514bp

uncharacterized_protein_LOC101741008_[Bombyx_mori]

FPKM:5.18 TPM:2.31

547

A_BomaMSG_c10615_g1_i1

286bp

non-canonical_poly(A)_RNA_polymerase_protein_Trf4-1_[Bombyx_mori]

FPKM:3.45 TPM:1.54

548

A_BomaMSG_c10616_g1_i1

262bp

FPKM:1.19 TPM:0.53

549

A_BomaMSG_c10617_g1_i1

475bp

DnaJ_domain-containing_protein_[Bombyx_mori]

GO:0001405	C	PAM complex, Tim23 associated import motor
GO:0001671	F	ATPase activator activity
GO:0005739	C	mitochondrion
GO:0005743	C	mitochondrial inner membrane
GO:0005744	C	TIM23 mitochondrial import inner membrane translocase complex
GO:0006810	P	transport
GO:0015031	P	protein transport
GO:0016020	C	membrane
GO:0016021	C	integral component of membrane
GO:0022008	P	neurogenesis
GO:0030150	P	protein import into mitochondrial matrix
GO:0032781	P	positive regulation of ATP-dependent activity

FPKM:10.97 TPM:4.90

550

A_BomaMSG_c10619_g1_i1

287bp

G_patch_domain-containing_protein_1_homolog_[Bombyx_mori]

GO:0003676	F	nucleic acid binding
GO:0006397	P	mRNA processing

FPKM:2.22 TPM:0.99

551

A_BomaMSG_c10619_g1_i2

486bp

G_patch_domain-containing_protein_1_homolog_[Bombyx_mori]

GO:0003676	F	nucleic acid binding
GO:0006397	P	mRNA processing

FPKM:4.50 TPM:2.01

552

A_BomaMSG_c1061_g1_i1

209bp

LOW_QUALITY_PROTEIN:_probable_C-mannosyltransferase_DPY19L1_[Bombyx_mori]

GO:0000030	F	mannosyltransferase activity
GO:0005637	C	nuclear inner membrane
GO:0016020	C	membrane
GO:0016021	C	integral component of membrane
GO:0016740	F	transferase activity
GO:0016757	F	glycosyltransferase activity
GO:0018406	P	protein C-linked glycosylation via 2'-alpha-mannosyl-L-tryptophan

FPKM:4.35 TPM:1.94

553

A_BomaMSG_c10620_g1_i1

882bp

uncharacterized_protein_LOC101742950_[Bombyx_mori]

FPKM:2.39 TPM:1.07

554

A_BomaMSG_c10621_g1_i1

277bp

FPKM:5.80 TPM:2.59

555

A_BomaMSG_c10622_g1_i1

272bp

FPKM:6.03 TPM:2.70

556

A_BomaMSG_c10623_g1_i1

224bp

FPKM:8.86 TPM:3.96

557

A_BomaMSG_c10624_g1_i1

224bp

FPKM:0.00 TPM:0.00

558

A_BomaMSG_c10625_g1_i1

240bp

FPKM:4.42 TPM:1.98

559

A_BomaMSG_c10627_g1_i1

342bp

FPKM:3.50 TPM:1.56

560

A_BomaMSG_c10628_g1_i1

204bp

histone_deacetylase_6_isoform_X2_[Bombyx_mori]

FPKM:0.00 TPM:0.00

561

A_BomaMSG_c10628_g1_i2

324bp

histone_deacetylase_6_isoform_X1_[Bombyx_mori]

GO:0000118	C	histone deacetylase complex
GO:0000209	P	protein polyubiquitination
GO:0001047	F	core promoter sequence-specific DNA binding
GO:0003779	F	actin binding
GO:0004407	F	histone deacetylase activity
GO:0005515	F	protein binding
GO:0005634	C	nucleus
GO:0005737	C	cytoplasm
GO:0005829	C	cytosol
GO:0005874	C	microtubule
GO:0005875	C	microtubule associated complex
GO:0005881	C	cytoplasmic microtubule
GO:0005901	C	caveola
GO:0006351	P	transcription, DNA-templated
GO:0006355	P	regulation of transcription, DNA-templated
GO:0006476	P	protein deacetylation
GO:0006511	P	ubiquitin-dependent protein catabolic process
GO:0006515	P	protein quality control for misfolded or incompletely synthesized proteins
GO:0006886	P	intracellular protein transport
GO:0007026	P	negative regulation of microtubule depolymerization
GO:0008013	F	beta-catenin binding
GO:0008017	F	microtubule binding
GO:0008270	F	zinc ion binding
GO:0009636	P	response to toxic substance
GO:0009967	P	positive regulation of signal transduction
GO:0010033	P	response to organic substance
GO:0010469	P	regulation of signaling receptor activity
GO:0010634	P	positive regulation of epithelial cell migration
GO:0010870	P	obsolete positive regulation of receptor biosynthetic process
GO:0016234	C	inclusion body
GO:0016235	C	aggresome
GO:0016236	P	macroautophagy
GO:0016568	P	chromatin organization
GO:0016575	P	histone deacetylation
GO:0016787	F	hydrolase activity
GO:0030286	C	dynein complex
GO:0030424	C	axon
GO:0030425	C	dendrite
GO:0031252	C	cell leading edge
GO:0031593	F	polyubiquitin modification-dependent protein binding
GO:0031625	F	ubiquitin protein ligase binding
GO:0031647	P	regulation of protein stability
GO:0032041	F	NAD-dependent histone deacetylase activity (H3-K14 specific)
GO:0032418	P	lysosome localization
GO:0034983	P	peptidyl-lysine deacetylation
GO:0035967	P	cellular response to topologically incorrect protein
GO:0040029	P	regulation of gene expression, epigenetic
GO:0042826	F	histone deacetylase binding
GO:0042903	F	tubulin deacetylase activity
GO:0042995	C	cell projection
GO:0043005	C	neuron projection
GO:0043014	F	alpha-tubulin binding
GO:0043130	F	ubiquitin binding
GO:0043162	P	ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway
GO:0043204	C	perikaryon
GO:0043234	C	protein-containing complex
GO:0043241	P	protein-containing complex disassembly
GO:0043242	P	negative regulation of protein-containing complex disassembly
GO:0044297	C	cell body
GO:0045598	P	regulation of fat cell differentiation
GO:0045861	P	negative regulation of proteolysis
GO:0046872	F	metal ion binding
GO:0048156	F	tau protein binding
GO:0048471	C	perinuclear region of cytoplasm
GO:0048487	F	beta-tubulin binding
GO:0048668	P	collateral sprouting
GO:0051646	P	mitochondrion localization
GO:0051787	F	misfolded protein binding
GO:0051788	P	response to misfolded protein
GO:0051879	F	Hsp90 protein binding
GO:0060997	P	dendritic spine morphogenesis
GO:0070201	P	regulation of establishment of protein localization
GO:0070301	P	cellular response to hydrogen peroxide
GO:0070840	F	dynein complex binding
GO:0070842	P	aggresome assembly
GO:0070845	P	polyubiquitinated misfolded protein transport
GO:0070846	P	Hsp90 deacetylation
GO:0070848	P	response to growth factor
GO:0070932	P	histone H3 deacetylation
GO:0071218	P	cellular response to misfolded protein
GO:0090035	P	positive regulation of chaperone-mediated protein complex assembly
GO:0090042	P	tubulin deacetylation
GO:0098779	P	positive regulation of mitophagy in response to mitochondrial depolarization
GO:1901300	P	positive regulation of hydrogen peroxide-mediated programmed cell death

FPKM:1.93 TPM:0.86

562

A_BomaMSG_c1062_g1_i1

366bp

suppressor_of_fused_homolog_[Bombyx_mori]

GO:0000122	P	negative regulation of transcription by RNA polymerase II
GO:0001843	P	neural tube closure
GO:0001947	P	heart looping
GO:0003281	P	ventricular septum development
GO:0003714	F	transcription corepressor activity
GO:0004871	F	obsolete signal transducer activity
GO:0005515	F	protein binding
GO:0005634	C	nucleus
GO:0005654	C	nucleoplasm
GO:0005737	C	cytoplasm
GO:0005829	C	cytosol
GO:0005929	C	cilium
GO:0007275	P	multicellular organism development
GO:0007368	P	determination of left/right symmetry
GO:0008013	F	beta-catenin binding
GO:0008134	F	transcription factor binding
GO:0019901	F	protein kinase binding
GO:0021513	P	spinal cord dorsal/ventral patterning
GO:0021775	P	smoothened signaling pathway involved in ventral spinal cord interneuron specification
GO:0021776	P	smoothened signaling pathway involved in spinal cord motor neuron cell fate specification
GO:0035904	P	aorta development
GO:0042994	P	cytoplasmic sequestering of transcription factor
GO:0043433	P	negative regulation of DNA-binding transcription factor activity
GO:0043588	P	skin development
GO:0045879	P	negative regulation of smoothened signaling pathway
GO:0060976	P	coronary vasculature development
GO:0072372	C	cilium
GO:1901621	P	negative regulation of smoothened signaling pathway involved in dorsal/ventral neural tube patterning
GO:2000059	P	negative regulation of ubiquitin-dependent protein catabolic process

FPKM:2.49 TPM:1.11

563

A_BomaMSG_c10630_g1_i1

224bp

FPKM:0.00 TPM:0.00

564

A_BomaMSG_c10630_g2_i1

493bp

FPKM:5.49 TPM:2.45

565

A_BomaMSG_c10631_g1_i1

734bp

glyoxylate_reductase/hydroxypyruvate_reductase_[Bombyx_mori]

GO:0005737	C	cytoplasm
GO:0005782	C	peroxisomal matrix
GO:0005829	C	cytosol
GO:0007588	P	excretion
GO:0008152	P	metabolic process
GO:0008465	F	glycerate dehydrogenase activity
GO:0016491	F	oxidoreductase activity
GO:0016616	F	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
GO:0016618	F	hydroxypyruvate reductase activity
GO:0030267	F	glyoxylate reductase (NADP+) activity
GO:0031406	F	carboxylic acid binding
GO:0042803	F	protein homodimerization activity
GO:0043648	P	dicarboxylic acid metabolic process
GO:0046487	P	glyoxylate metabolic process
GO:0050661	F	NADP binding
GO:0051259	P	protein complex oligomerization
GO:0051287	F	NAD binding
GO:0055114	P	obsolete oxidation-reduction process
GO:0070062	C	extracellular exosome
GO:0070402	F	NADPH binding