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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
3871 A_BomaMSG_c14151_g1_i1
401bp
PREDICTED:_uncharacterized_protein_LOC108759265_[Trachymyrmex_cornetzi]
GO:0003964 F RNA-directed DNA polymerase activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0008152 P metabolic process
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0046872 F metal ion binding
FPKM:3.75 TPM:1.68
3872 A_BomaMSG_c14152_g1_i1
523bp
microtubule-actin_cross-linking_factor_1,_isoforms_1/2/3/5_[Bombyx_mori]
GO:0001725 C stress fiber
GO:0003779 F actin binding
GO:0005509 F calcium ion binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005635 C nuclear envelope
GO:0005737 C cytoplasm
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0005856 C cytoskeleton
GO:0005874 C microtubule
GO:0005882 C intermediate filament
GO:0005886 C plasma membrane
GO:0005925 C focal adhesion
GO:0005938 C cell cortex
GO:0007010 P cytoskeleton organization
GO:0007050 P regulation of cell cycle
GO:0007155 P cell adhesion
GO:0007409 P axonogenesis
GO:0008090 P retrograde axonal transport
GO:0008092 F cytoskeletal protein binding
GO:0009898 C cytoplasmic side of plasma membrane
GO:0014704 C intercalated disc
GO:0015629 C actin cytoskeleton
GO:0015630 C microtubule cytoskeleton
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016023 C cytoplasmic vesicle
GO:0030018 C Z disc
GO:0030054 C cell junction
GO:0030056 C hemidesmosome
GO:0030424 C axon
GO:0031673 C H zone
GO:0035371 C microtubule plus-end
GO:0042383 C sarcolemma
GO:0042803 F protein homodimerization activity
GO:0042995 C cell projection
GO:0045104 P intermediate filament cytoskeleton organization
GO:0046872 F metal ion binding
GO:0046907 P intracellular transport
GO:0048471 C perinuclear region of cytoplasm
GO:0051010 F microtubule plus-end binding
GO:0097038 C perinuclear endoplasmic reticulum
GO:0097481 C postsynaptic density
GO:1904115 C axon cytoplasm
FPKM:8.66 TPM:3.87
3873 A_BomaMSG_c14153_g1_i1
273bp
FPKM:5.99 TPM:2.68
3874 A_BomaMSG_c14154_g1_i1
280bp
FPKM:7.73 TPM:3.45
3875 A_BomaMSG_c14156_g1_i1
504bp
leukocyte_receptor_cluster_member_1_homolog_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005515 F protein binding
GO:0005575 C cellular_component
GO:0008150 P biological_process
FPKM:6.65 TPM:2.97
3876 A_BomaMSG_c14157_g1_i1
322bp
FPKM:5.86 TPM:2.62
3877 A_BomaMSG_c14158_g1_i1
432bp
FPKM:4.05 TPM:1.81
3878 A_BomaMSG_c1415_g1_i1
235bp
angiotensin-converting_enzyme_[Bombyx_mori]
FPKM:0.78 TPM:0.35
3879 A_BomaMSG_c14160_g1_i1
502bp
cytoplasmic_protein_NCK1_[Bombyx_mori]
GO:0001771 P immunological synapse formation
GO:0005086 F guanyl-nucleotide exchange factor activity
GO:0005737 C cytoplasm
GO:0005783 C endoplasmic reticulum
GO:0005802 C trans-Golgi network
GO:0006417 P regulation of translation
GO:0007015 P actin filament organization
GO:0012506 C vesicle membrane
GO:0016192 P vesicle-mediated transport
GO:0016477 P cell migration
GO:0030032 P lamellipodium assembly
GO:0030838 P positive regulation of actin filament polymerization
GO:0032403 F protein-containing complex binding
GO:0033137 P negative regulation of peptidyl-serine phosphorylation
GO:0036493 P positive regulation of translation in response to endoplasmic reticulum stress
GO:0042102 P positive regulation of T cell proliferation
GO:0043547 P positive regulation of GTPase activity
GO:0045202 C synapse
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0048013 P ephrin receptor signaling pathway
GO:0060996 P dendritic spine development
GO:0097110 F scaffold protein binding
GO:0097481 C postsynaptic density
GO:1902237 P positive regulation of endoplasmic reticulum stress-induced intrinsic apoptotic signaling pathway
GO:1903898 P negative regulation of PERK-mediated unfolded protein response
GO:1903912 P negative regulation of endoplasmic reticulum stress-induced eIF2 alpha phosphorylation
GO:1990441 P negative regulation of transcription from RNA polymerase II promoter in response to endoplasmic reticulum stress
FPKM:4.97 TPM:2.22
3880 A_BomaMSG_c14161_g1_i1
282bp
FPKM:3.05 TPM:1.36
3881 A_BomaMSG_c14162_g1_i1
296bp
FPKM:22.97 TPM:10.27
3882 A_BomaMSG_c14163_g1_i1
416bp
FPKM:14.16 TPM:6.33
3883 A_BomaMSG_c14164_g1_i1
274bp
exocyst_complex_component_1_[Bombyx_mori]
GO:0000145 C exocyst
GO:0005546 F phosphatidylinositol-4,5-bisphosphate binding
GO:0006810 P transport
GO:0006887 P exocytosis
GO:0015031 P protein transport
GO:0016080 P synaptic vesicle targeting
GO:0016081 P synaptic vesicle docking
GO:0098793 C presynapse
FPKM:0.00 TPM:0.00
3884 A_BomaMSG_c14164_g1_i2
294bp
exocyst_complex_component_1_[Bombyx_mori]
GO:0000145 C exocyst
GO:0005546 F phosphatidylinositol-4,5-bisphosphate binding
GO:0006810 P transport
GO:0006887 P exocytosis
GO:0015031 P protein transport
GO:0016080 P synaptic vesicle targeting
GO:0016081 P synaptic vesicle docking
GO:0098793 C presynapse
FPKM:3.73 TPM:1.67
3885 A_BomaMSG_c14164_g1_i3
206bp
exocyst_complex_component_1_[Bombyx_mori]
GO:0000145 C exocyst
GO:0005546 F phosphatidylinositol-4,5-bisphosphate binding
GO:0006810 P transport
GO:0006887 P exocytosis
GO:0015031 P protein transport
GO:0016080 P synaptic vesicle targeting
GO:0016081 P synaptic vesicle docking
GO:0098793 C presynapse
FPKM:0.00 TPM:0.00
3886 A_BomaMSG_c14165_g1_i1
286bp
uncharacterized_protein_LOC101735649_[Bombyx_mori]
FPKM:4.44 TPM:1.98
3887 A_BomaMSG_c14166_g1_i1
765bp
cyclin-dependent_kinase_2-interacting_protein-like_[Helicoverpa_armigera]
FPKM:4.16 TPM:1.86
3888 A_BomaMSG_c14167_g1_i1
262bp
uncharacterized_protein_LOC110386682_[Bombyx_mori]
FPKM:2.39 TPM:1.07
3889 A_BomaMSG_c14168_g1_i1
210bp
FPKM:18.20 TPM:8.13
3890 A_BomaMSG_c14169_g1_i1
261bp
uncharacterized_protein_LOC110384711_isoform_X1_[Bombyx_mori]
FPKM:2.41 TPM:1.08
3891 A_BomaMSG_c1416_g1_i1
251bp
FPKM:5.28 TPM:2.36
3892 A_BomaMSG_c1416_g2_i1
293bp
FPKM:0.94 TPM:0.42
3893 A_BomaMSG_c14170_g1_i1
722bp
FPKM:1.65 TPM:0.74
3894 A_BomaMSG_c14171_g1_i1
550bp
FPKM:2.52 TPM:1.13
3895 A_BomaMSG_c14172_g1_i1
931bp
transformation/transcription_domain-associated_protein_[Bombyx_mori]
GO:0000125 C SAGA complex
GO:0000812 C Swr1 complex
GO:0003712 F transcription coregulator activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005794 C Golgi apparatus
GO:0006281 P DNA repair
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016568 P chromatin organization
GO:0016573 P histone acetylation
GO:0016578 P histone deubiquitination
GO:0016773 F phosphotransferase activity, alcohol group as acceptor
GO:0030914 C SAGA complex
GO:0033276 C transcription factor TFTC complex
GO:0035267 C NuA4 histone acetyltransferase complex
GO:0043967 P histone H4 acetylation
GO:0043968 P histone H2A acetylation
GO:1904837 P beta-catenin-TCF complex assembly
FPKM:2.24 TPM:1.00
3896 A_BomaMSG_c14173_g1_i1
330bp
FPKM:5.60 TPM:2.50
3897 A_BomaMSG_c14175_g1_i1
658bp
NEDD8-conjugating_enzyme_UBE2F_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006301 P postreplication repair
GO:0016874 F ligase activity
GO:0019788 F NEDD8 transferase activity
GO:0031625 F ubiquitin protein ligase binding
GO:0045116 P protein neddylation
GO:0061630 F ubiquitin protein ligase activity
GO:0070534 P protein K63-linked ubiquitination
FPKM:0.77 TPM:0.34
3898 A_BomaMSG_c14175_g1_i2
816bp
NEDD8-conjugating_enzyme_UBE2F_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006301 P postreplication repair
GO:0016874 F ligase activity
GO:0019788 F NEDD8 transferase activity
GO:0031625 F ubiquitin protein ligase binding
GO:0045116 P protein neddylation
GO:0061630 F ubiquitin protein ligase activity
GO:0070534 P protein K63-linked ubiquitination
FPKM:2.14 TPM:0.96
3899 A_BomaMSG_c14176_g1_i1
208bp
TELO2-interacting_protein_2-like_[Bombyx_mori]
FPKM:7.72 TPM:3.45
3900 A_BomaMSG_c14177_g1_i1
485bp
arf-GAP_domain_and_FG_repeat-containing_protein_1_isoform_X1_[Bombyx_mori]
GO:0001675 P acrosome assembly
GO:0003677 F DNA binding
GO:0005096 F GTPase activator activity
GO:0005634 C nucleus
GO:0006810 P transport
GO:0007275 P multicellular organism development
GO:0007283 P spermatogenesis
GO:0007289 P spermatid nucleus differentiation
GO:0016023 C cytoplasmic vesicle
GO:0030154 P cell differentiation
GO:0031410 C cytoplasmic vesicle
GO:0042995 C cell projection
GO:0043025 C neuronal cell body
GO:0043231 C intracellular membrane-bounded organelle
GO:0043547 P positive regulation of GTPase activity
GO:0045109 P intermediate filament organization
GO:0046872 F metal ion binding
FPKM:2.58 TPM:1.15
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