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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
3841 A_BomaMSG_c14126_g1_i1
836bp
FPKM:2.26 TPM:1.01
3842 A_BomaMSG_c14127_g1_i1
309bp
uncharacterized_protein_LOC101745407_isoform_X6_[Bombyx_mori]
FPKM:6.33 TPM:2.83
3843 A_BomaMSG_c14128_g1_i1
313bp
FPKM:8.65 TPM:3.87
3844 A_BomaMSG_c14129_g1_i1
1191bp
LOW_QUALITY_PROTEIN:_protein_split_ends_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007173 P epidermal growth factor receptor signaling pathway
GO:0007275 P multicellular organism development
GO:0007379 P segment specification
GO:0007400 P neuroblast fate determination
GO:0007403 P glial cell fate determination
GO:0007411 P axon guidance
GO:0007422 P peripheral nervous system development
GO:0008586 P imaginal disc-derived wing vein morphogenesis
GO:0016055 P Wnt signaling pathway
GO:0030177 P positive regulation of Wnt signaling pathway
GO:0035222 P wing disc pattern formation
GO:0035321 P maintenance of imaginal disc-derived wing hair orientation
GO:0048106 P establishment of thoracic bristle planar orientation
GO:0048749 P compound eye development
GO:0050832 P defense response to fungus
FPKM:3.76 TPM:1.68
3845 A_BomaMSG_c14129_g1_i2
1167bp
LOW_QUALITY_PROTEIN:_protein_split_ends_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007173 P epidermal growth factor receptor signaling pathway
GO:0007275 P multicellular organism development
GO:0007379 P segment specification
GO:0007400 P neuroblast fate determination
GO:0007403 P glial cell fate determination
GO:0007411 P axon guidance
GO:0007422 P peripheral nervous system development
GO:0008586 P imaginal disc-derived wing vein morphogenesis
GO:0016055 P Wnt signaling pathway
GO:0030177 P positive regulation of Wnt signaling pathway
GO:0035222 P wing disc pattern formation
GO:0035321 P maintenance of imaginal disc-derived wing hair orientation
GO:0048106 P establishment of thoracic bristle planar orientation
GO:0048749 P compound eye development
GO:0050832 P defense response to fungus
FPKM:0.25 TPM:0.11
3846 A_BomaMSG_c1412_g1_i1
586bp
THO_complex_subunit_1_[Bombyx_mori]
GO:0000018 P regulation of DNA recombination
GO:0000346 C transcription export complex
GO:0000347 C THO complex
GO:0000445 C THO complex part of transcription export complex
GO:0000784 C chromosome, telomeric region
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006369 P termination of RNA polymerase II transcription
GO:0006396 P RNA processing
GO:0006397 P mRNA processing
GO:0006405 P RNA export from nucleus
GO:0006406 P mRNA export from nucleus
GO:0006810 P transport
GO:0006915 P apoptotic process
GO:0007165 P signal transduction
GO:0008380 P RNA splicing
GO:0016363 C nuclear matrix
GO:0016607 C nuclear speck
GO:0031124 P mRNA 3'-end processing
GO:0031297 P replication fork processing
GO:0032784 P regulation of DNA-templated transcription, elongation
GO:0032786 P positive regulation of DNA-templated transcription, elongation
GO:0045171 C intercellular bridge
GO:0046784 P viral mRNA export from host cell nucleus
GO:0048297 P negative regulation of isotype switching to IgA isotypes
GO:0051028 P mRNA transport
GO:2000002 P negative regulation of DNA damage checkpoint
FPKM:4.32 TPM:1.93
3847 A_BomaMSG_c14130_g1_i1
299bp
regucalcin_isoform_X4_[Bombyx_mori]
GO:0004341 F gluconolactonase activity
GO:0005509 F calcium ion binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006874 P cellular calcium ion homeostasis
GO:0008270 F zinc ion binding
GO:0016787 F hydrolase activity
GO:0019853 P L-ascorbic acid biosynthetic process
GO:0030234 F enzyme regulator activity
GO:0032781 P positive regulation of ATP-dependent activity
GO:0046872 F metal ion binding
GO:0050848 P regulation of calcium-mediated signaling
FPKM:2.25 TPM:1.01
3848 A_BomaMSG_c14131_g1_i1
229bp
FPKM:0.00 TPM:0.00
3849 A_BomaMSG_c14131_g1_i2
227bp
FPKM:4.27 TPM:1.91
3850 A_BomaMSG_c14132_g1_i1
232bp
transcriptional_regulator_ATRX_homolog_isoform_X4_[Helicoverpa_armigera]
FPKM:5.63 TPM:2.52
3851 A_BomaMSG_c14133_g1_i1
506bp
phosphatidylinositol_4-phosphate_3-kinase_C2_domain-containing_subunit_alpha_isoform_X2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0005942 C phosphatidylinositol 3-kinase complex
GO:0006661 P phosphatidylinositol biosynthetic process
GO:0006887 P exocytosis
GO:0006897 P endocytosis
GO:0007173 P epidermal growth factor receptor signaling pathway
GO:0008286 P insulin receptor signaling pathway
GO:0014829 P vascular associated smooth muscle contraction
GO:0016020 C membrane
GO:0016301 F kinase activity
GO:0016303 F 1-phosphatidylinositol-3-kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0016773 F phosphotransferase activity, alcohol group as acceptor
GO:0030136 C clathrin-coated vesicle
GO:0031410 C cytoplasmic vesicle
GO:0031982 C vesicle
GO:0035004 F phosphatidylinositol 3-kinase activity
GO:0035005 F 1-phosphatidylinositol-4-phosphate 3-kinase activity
GO:0035091 F phosphatidylinositol binding
GO:0036092 P phosphatidylinositol-3-phosphate biosynthetic process
GO:0046854 P phosphatidylinositol phosphate biosynthetic process
GO:0048008 P platelet-derived growth factor receptor signaling pathway
GO:0048015 P phosphatidylinositol-mediated signaling
GO:0048268 P clathrin coat assembly
GO:0070062 C extracellular exosome
FPKM:3.59 TPM:1.61
3852 A_BomaMSG_c14134_g1_i1
489bp
FPKM:2.38 TPM:1.06
3853 A_BomaMSG_c14136_g1_i1
392bp
FPKM:8.61 TPM:3.85
3854 A_BomaMSG_c14138_g1_i1
632bp
probable_protein_phosphatase_2C_T23F11.1_isoform_X2_[Bombyx_mori]
GO:0003824 F catalytic activity
GO:0004721 F phosphoprotein phosphatase activity
GO:0004722 F protein serine/threonine phosphatase activity
GO:0006470 P protein dephosphorylation
GO:0016787 F hydrolase activity
GO:0030517 P negative regulation of axon extension
GO:0031625 F ubiquitin protein ligase binding
GO:0043169 F cation binding
GO:0046872 F metal ion binding
GO:0048786 C presynaptic active zone
GO:0051965 P positive regulation of synapse assembly
FPKM:7.82 TPM:3.50
3855 A_BomaMSG_c14139_g1_i1
637bp
E3_ubiquitin-protein_ligase_MARCH6_[Bombyx_mori]
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0008270 F zinc ion binding
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0030176 C integral component of endoplasmic reticulum membrane
GO:0046872 F metal ion binding
GO:0070936 P protein K48-linked ubiquitination
FPKM:3.59 TPM:1.61
3856 A_BomaMSG_c1413_g1_i1
402bp
protein_unc-13_homolog_4B_isoform_X5_[Bombyx_mori]
FPKM:3.20 TPM:1.43
3857 A_BomaMSG_c14140_g1_i1
464bp
PREDICTED:_transcription_initiation_factor_TFIID_subunit_1-like,_partial_[Plutella_xylostella]
GO:0000166 F nucleotide binding
GO:0001075 F RNA polymerase II general transcription initiation factor activity
GO:0001129 F obsolete RNA polymerase II transcription factor activity, TBP-class protein binding, involved in preinitiation complex assembly
GO:0003677 F DNA binding
GO:0004402 F histone acetyltransferase activity
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005669 C transcription factor TFIID complex
GO:0005730 C nucleolus
GO:0006351 P transcription, DNA-templated
GO:0006352 P DNA-templated transcription, initiation
GO:0006355 P regulation of transcription, DNA-templated
GO:0006367 P transcription initiation from RNA polymerase II promoter
GO:0006461 P protein-containing complex assembly
GO:0006468 P protein phosphorylation
GO:0007049 P cell cycle
GO:0007221 P positive regulation of transcription of Notch receptor target
GO:0008134 F transcription factor binding
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016573 P histone acetylation
GO:0016740 F transferase activity
GO:0022008 P neurogenesis
GO:0043565 F sequence-specific DNA binding
GO:0044212 F transcription cis-regulatory region binding
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046425 P regulation of receptor signaling pathway via JAK-STAT
GO:0051123 P RNA polymerase II preinitiation complex assembly
GO:0051726 P regulation of cell cycle
GO:0060261 P positive regulation of transcription initiation from RNA polymerase II promoter
FPKM:3.86 TPM:1.72
3858 A_BomaMSG_c14141_g1_i1
483bp
uncharacterized_protein_LOC105842330_[Bombyx_mori]
FPKM:5.86 TPM:2.62
3859 A_BomaMSG_c14142_g1_i1
307bp
FPKM:127.40 TPM:56.93
3860 A_BomaMSG_c14143_g1_i1
424bp
FPKM:1.52 TPM:0.68
3861 A_BomaMSG_c14143_g1_i2
245bp
FPKM:3.35 TPM:1.50
3862 A_BomaMSG_c14144_g1_i1
259bp
FPKM:1.23 TPM:0.55
3863 A_BomaMSG_c14145_g1_i1
285bp
protein_outspread_[Bombyx_mori]
FPKM:6.45 TPM:2.88
3864 A_BomaMSG_c14146_g1_i1
464bp
rho_GTPase-activating_protein_190_isoform_X3_[Bombyx_mori]
GO:0005096 F GTPase activator activity
GO:0005525 F GTP binding
GO:0005575 C cellular_component
GO:0005622 C intracellular anatomical structure
GO:0007165 P signal transduction
GO:0007264 P small GTPase mediated signal transduction
GO:0007266 P Rho protein signal transduction
GO:0007275 P multicellular organism development
GO:0007415 P defasciculation of motor neuron axon
GO:0016319 P mushroom body development
GO:0030215 F semaphorin receptor binding
GO:0043547 P positive regulation of GTPase activity
GO:0045792 P negative regulation of cell size
GO:0050770 P regulation of axonogenesis
FPKM:0.02 TPM:0.01
3865 A_BomaMSG_c14146_g1_i2
537bp
rho_GTPase-activating_protein_190_isoform_X3_[Bombyx_mori]
GO:0005096 F GTPase activator activity
GO:0005525 F GTP binding
GO:0005575 C cellular_component
GO:0005622 C intracellular anatomical structure
GO:0007165 P signal transduction
GO:0007264 P small GTPase mediated signal transduction
GO:0007266 P Rho protein signal transduction
GO:0007275 P multicellular organism development
GO:0007415 P defasciculation of motor neuron axon
GO:0016319 P mushroom body development
GO:0030215 F semaphorin receptor binding
GO:0043547 P positive regulation of GTPase activity
GO:0045792 P negative regulation of cell size
GO:0050770 P regulation of axonogenesis
FPKM:1.90 TPM:0.85
3866 A_BomaMSG_c14147_g1_i1
556bp
uncharacterized_protein_LOC101746966_isoform_X2_[Bombyx_mori]
FPKM:1.82 TPM:0.82
3867 A_BomaMSG_c14147_g1_i2
206bp
uncharacterized_protein_LOC101746966_isoform_X2_[Bombyx_mori]
FPKM:3.41 TPM:1.52
3868 A_BomaMSG_c14148_g1_i1
605bp
FPKM:4.44 TPM:1.98
3869 A_BomaMSG_c14149_g1_i1
355bp
FPKM:4.26 TPM:1.90
3870 A_BomaMSG_c1414_g1_i1
571bp
solute_carrier_family_12_member_6_isoform_X4_[Bombyx_mori]
GO:0001525 P angiogenesis
GO:0005215 F transporter activity
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006813 P potassium ion transport
GO:0007268 P chemical synaptic transmission
GO:0010107 P potassium ion import across plasma membrane
GO:0015079 F potassium ion transmembrane transporter activity
GO:0015293 F symporter activity
GO:0015377 F cation:chloride symporter activity
GO:0015379 F potassium:chloride symporter activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016323 C basolateral plasma membrane
GO:0019901 F protein kinase binding
GO:0022820 F potassium:chloride symporter activity
GO:0035826 P obsolete rubidium ion transport
GO:0035827 F obsolete rubidium ion transmembrane transporter activity
GO:0055085 P transmembrane transport
GO:0071476 P cellular hypotonic response
GO:0071477 P cellular hypotonic salinity response
GO:0071805 P potassium ion transmembrane transport
GO:1902476 P chloride transmembrane transport
FPKM:4.32 TPM:1.93
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