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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
3751 A_BomaMSG_c14035_g1_i1
1897bp
uncharacterized_protein_LOC101737934_isoform_X1_[Bombyx_mori]
GO:0005328 F neurotransmitter:sodium symporter activity
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006814 P sodium ion transport
GO:0006836 P neurotransmitter transport
GO:0015293 F symporter activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0055085 P transmembrane transport
FPKM:1.81 TPM:0.81
3752 A_BomaMSG_c14036_g1_i1
226bp
FPKM:0.86 TPM:0.39
3753 A_BomaMSG_c14036_g2_i1
446bp
FPKM:6.59 TPM:2.95
3754 A_BomaMSG_c14037_g1_i1
212bp
FPKM:4.16 TPM:1.86
3755 A_BomaMSG_c14038_g1_i1
563bp
FPKM:6.36 TPM:2.84
3756 A_BomaMSG_c14039_g1_i1
349bp
protein_VAC14_homolog_isoform_X1_[Bombyx_mori]
GO:0005768 C endosome
GO:0010008 C endosome membrane
GO:0016020 C membrane
GO:0043550 P regulation of lipid kinase activity
GO:0070772 C PAS complex
FPKM:3.71 TPM:1.66
3757 A_BomaMSG_c1403_g1_i1
630bp
oligosaccharyltransferase_complex_subunit_ostc-A_[Bombyx_mori]
GO:0016020 C membrane
GO:0016021 C integral component of membrane
FPKM:87.51 TPM:39.11
3758 A_BomaMSG_c14040_g1_i1
209bp
FPKM:8.69 TPM:3.88
3759 A_BomaMSG_c14041_g1_i1
252bp
uridine-cytidine_kinase-like_1_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0004849 F uridine kinase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006206 P pyrimidine nucleobase metabolic process
GO:0008152 P metabolic process
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0043097 P pyrimidine nucleoside salvage
GO:0044206 P UMP salvage
FPKM:3.02 TPM:1.35
3760 A_BomaMSG_c14041_g1_i2
284bp
uridine-cytidine_kinase-like_1_isoform_X2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0004849 F uridine kinase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006206 P pyrimidine nucleobase metabolic process
GO:0008152 P metabolic process
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0043097 P pyrimidine nucleoside salvage
GO:0044206 P UMP salvage
FPKM:0.69 TPM:0.31
3761 A_BomaMSG_c14042_g1_i1
453bp
replication_factor_C4_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003677 F DNA binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0006260 P DNA replication
FPKM:4.44 TPM:1.98
3762 A_BomaMSG_c14043_g1_i1
252bp
FPKM:6.53 TPM:2.92
3763 A_BomaMSG_c14045_g1_i1
421bp
FPKM:7.20 TPM:3.22
3764 A_BomaMSG_c14046_g1_i1
241bp
FPKM:2.19 TPM:0.98
3765 A_BomaMSG_c14047_g1_i1
418bp
3-ketoacyl-CoA_thiolase,_mitochondrial_[Bombyx_mori]
GO:0003824 F catalytic activity
GO:0003988 F acetyl-CoA C-acyltransferase activity
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0006629 P lipid metabolic process
GO:0006631 P fatty acid metabolic process
GO:0008152 P metabolic process
GO:0016740 F transferase activity
GO:0016746 F acyltransferase activity
GO:0016747 F acyltransferase activity, transferring groups other than amino-acyl groups
GO:0044822 F RNA binding
GO:0070062 C extracellular exosome
GO:0071456 P cellular response to hypoxia
GO:1901029 P negative regulation of mitochondrial outer membrane permeabilization involved in apoptotic signaling pathway
GO:1902109 P negative regulation of mitochondrial membrane permeability involved in apoptotic process
FPKM:1.76 TPM:0.79
3766 A_BomaMSG_c14048_g1_i1
322bp
radial_spoke_head_protein_6_homolog_A_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005622 C intracellular anatomical structure
GO:0005929 C cilium
GO:0008150 P biological_process
FPKM:1.56 TPM:0.70
3767 A_BomaMSG_c14049_g1_i1
281bp
DEP_domain-containing_protein_5_isoform_X2_[Bombyx_mori]
FPKM:8.18 TPM:3.66
3768 A_BomaMSG_c1404_g1_i1
209bp
FPKM:0.00 TPM:0.00
3769 A_BomaMSG_c14050_g1_i1
270bp
FPKM:3.35 TPM:1.49
3770 A_BomaMSG_c14051_g1_i1
233bp
ankyrin_repeat_and_LEM_domain-containing_protein_2_isoform_X1_[Bombyx_mori]
FPKM:16.71 TPM:7.47
3771 A_BomaMSG_c14052_g1_i1
235bp
FPKM:1.56 TPM:0.70
3772 A_BomaMSG_c14053_g1_i1
458bp
NEDD8_[Bombyx_mori]
GO:0005634 C nucleus
GO:0007275 P multicellular organism development
GO:0008283 P cell population proliferation
GO:0008589 P regulation of smoothened signaling pathway
GO:0022008 P neurogenesis
GO:0030162 P regulation of proteolysis
GO:0030431 P sleep
GO:0031386 F protein tag
GO:0031647 P regulation of protein stability
GO:0036099 P female germ-line stem cell population maintenance
GO:0045116 P protein neddylation
GO:0048812 P neuron projection morphogenesis
GO:0051438 P regulation of ubiquitin-protein transferase activity
FPKM:0.00 TPM:0.00
3773 A_BomaMSG_c14053_g1_i2
476bp
NEDD8_[Bombyx_mori]
GO:0005634 C nucleus
GO:0007275 P multicellular organism development
GO:0008283 P cell population proliferation
GO:0008589 P regulation of smoothened signaling pathway
GO:0022008 P neurogenesis
GO:0030162 P regulation of proteolysis
GO:0030431 P sleep
GO:0031386 F protein tag
GO:0031647 P regulation of protein stability
GO:0036099 P female germ-line stem cell population maintenance
GO:0045116 P protein neddylation
GO:0048812 P neuron projection morphogenesis
GO:0051438 P regulation of ubiquitin-protein transferase activity
FPKM:26.62 TPM:11.90
3774 A_BomaMSG_c14054_g1_i1
418bp
FPKM:2.26 TPM:1.01
3775 A_BomaMSG_c14055_g1_i1
242bp
FPKM:2.89 TPM:1.29
3776 A_BomaMSG_c14055_g1_i2
217bp
FPKM:5.82 TPM:2.60
3777 A_BomaMSG_c14056_g1_i1
234bp
FPKM:2.36 TPM:1.05
3778 A_BomaMSG_c14057_g1_i1
762bp
probable_ATP-dependent_RNA_helicase_Dbp45A_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0010501 P RNA secondary structure unwinding
GO:0016787 F hydrolase activity
FPKM:2.75 TPM:1.23
3779 A_BomaMSG_c14058_g1_i1
254bp
FPKM:9.62 TPM:4.30
3780 A_BomaMSG_c1405_g1_i1
445bp
protein_SMG8_[Bombyx_mori]
GO:0000184 P nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0005515 F protein binding
GO:0005575 C cellular_component
GO:0005829 C cytosol
GO:0045859 P regulation of protein kinase activity
FPKM:2.74 TPM:1.22
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