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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
3571 A_BomaMSG_c13816_g1_i1
447bp
FPKM:9.28 TPM:4.15
3572 A_BomaMSG_c13816_g2_i1
215bp
FPKM:1.99 TPM:0.89
3573 A_BomaMSG_c13817_g1_i1
668bp
hypothetical_protein_KGM_209963_[Danaus_plexippus_plexippus]
FPKM:2.08 TPM:0.93
3574 A_BomaMSG_c13818_g1_i1
697bp
rho_guanine_nucleotide_exchange_factor_10_isoform_X5_[Bombyx_mori]
GO:0005085 F guanyl-nucleotide exchange factor activity
GO:0005089 F guanyl-nucleotide exchange factor activity
GO:0005737 C cytoplasm
GO:0035023 P regulation of Rho protein signal transduction
GO:0043547 P positive regulation of GTPase activity
FPKM:1.60 TPM:0.71
3575 A_BomaMSG_c13819_g1_i1
303bp
FPKM:3.51 TPM:1.57
3576 A_BomaMSG_c1381_g1_i1
318bp
FPKM:4.40 TPM:1.96
3577 A_BomaMSG_c13821_g1_i1
261bp
FPKM:1.20 TPM:0.54
3578 A_BomaMSG_c13822_g1_i1
312bp
mitochondrial_inner_membrane_protease_subunit_1_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0004252 F serine-type endopeptidase activity
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0006465 P signal peptide processing
GO:0006508 P proteolysis
GO:0006627 P protein processing involved in protein targeting to mitochondrion
GO:0008150 P biological_process
GO:0008233 F peptidase activity
GO:0008236 F serine-type peptidase activity
GO:0016020 C membrane
GO:0016787 F hydrolase activity
GO:0033108 P mitochondrial respiratory chain complex assembly
GO:0042720 C mitochondrial inner membrane peptidase complex
FPKM:3.32 TPM:1.48
3579 A_BomaMSG_c13823_g1_i1
465bp
inositol_hexakisphosphate_and_diphosphoinositol-pentakisphosphate_kinase_isoform_X14_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000827 F inositol-1,3,4,5,6-pentakisphosphate kinase activity
GO:0000832 F inositol hexakisphosphate 5-kinase activity
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006020 P inositol metabolic process
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0033857 F diphosphoinositol-pentakisphosphate kinase activity
GO:0052723 F inositol hexakisphosphate 1-kinase activity
GO:0052724 F inositol hexakisphosphate 3-kinase activity
FPKM:5.13 TPM:2.29
3580 A_BomaMSG_c13824_g1_i1
270bp
FPKM:8.92 TPM:3.99
3581 A_BomaMSG_c13825_g1_i1
415bp
FAS-associated_factor_1_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005635 C nuclear envelope
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006915 P apoptotic process
GO:0007253 P cytoplasmic sequestering of NF-kappaB
GO:0008219 P cell death
GO:0010942 P positive regulation of cell death
GO:0019887 F protein kinase regulator activity
GO:0019901 F protein kinase binding
GO:0019904 F protein domain specific binding
GO:0030155 P regulation of cell adhesion
GO:0031072 F heat shock protein binding
GO:0031265 C CD95 death-inducing signaling complex
GO:0031334 P positive regulation of protein-containing complex assembly
GO:0031625 F ubiquitin protein ligase binding
GO:0034098 C VCP-NPL4-UFD1 AAA ATPase complex
GO:0042176 P regulation of protein catabolic process
GO:0043065 P positive regulation of apoptotic process
GO:0043130 F ubiquitin binding
GO:0043161 P proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0045859 P regulation of protein kinase activity
GO:0048471 C perinuclear region of cytoplasm
GO:0051059 F NF-kappaB binding
GO:1902043 P positive regulation of extrinsic apoptotic signaling pathway via death domain receptors
FPKM:3.55 TPM:1.59
3582 A_BomaMSG_c13826_g1_i1
544bp
RNA-binding_protein_Nova-1_isoform_X8_[Bombyx_mori]
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
FPKM:2.73 TPM:1.22
3583 A_BomaMSG_c13827_g1_i1
294bp
FPKM:2.79 TPM:1.25
3584 A_BomaMSG_c13828_g1_i1
233bp
FPKM:3.98 TPM:1.78
3585 A_BomaMSG_c13829_g1_i1
268bp
FPKM:4.53 TPM:2.03
3586 A_BomaMSG_c1382_g1_i1
636bp
FPKM:24.24 TPM:10.83
3587 A_BomaMSG_c13830_g1_i1
497bp
carboxy-terminal_domain_RNA_polymerase_II_polypeptide_A_small_phosphatase_1_[Bombyx_mori]
GO:0001933 P negative regulation of protein phosphorylation
GO:0004721 F phosphoprotein phosphatase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006470 P protein dephosphorylation
GO:0008420 F RNA polymerase II CTD heptapeptide repeat phosphatase activity
GO:0016787 F hydrolase activity
GO:0016791 F phosphatase activity
GO:0045665 P negative regulation of neuron differentiation
GO:0046872 F metal ion binding
GO:0050768 P negative regulation of neurogenesis
GO:0070062 C extracellular exosome
GO:2000134 P negative regulation of G1/S transition of mitotic cell cycle
FPKM:2.52 TPM:1.13
3588 A_BomaMSG_c13831_g1_i1
455bp
FPKM:3.09 TPM:1.38
3589 A_BomaMSG_c13832_g1_i1
664bp
E3_ubiquitin-protein_ligase_TRAIP_[Bombyx_mori]
FPKM:2.10 TPM:0.94
3590 A_BomaMSG_c13833_g1_i1
644bp
FPKM:2.73 TPM:1.22
3591 A_BomaMSG_c13835_g1_i1
264bp
FPKM:3.52 TPM:1.57
3592 A_BomaMSG_c13836_g1_i1
300bp
myosin-IIIb-like_isoform_X3_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0001952 P regulation of cell-matrix adhesion
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0004702 F obsolete signal transducer, downstream of receptor, with serine/threonine kinase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0006468 P protein phosphorylation
GO:0006950 P response to stress
GO:0007254 P JNK cascade
GO:0007268 P chemical synaptic transmission
GO:0007275 P multicellular organism development
GO:0014069 C postsynaptic density
GO:0016020 C membrane
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0022407 P regulation of cell-cell adhesion
GO:0030033 P microvillus assembly
GO:0030054 C cell junction
GO:0030334 P regulation of cell migration
GO:0030424 C axon
GO:0030425 C dendrite
GO:0031532 P actin cytoskeleton reorganization
GO:0035556 P intracellular signal transduction
GO:0042995 C cell projection
GO:0045202 C synapse
GO:0045211 C postsynaptic membrane
GO:0046330 P positive regulation of JNK cascade
GO:0046777 P protein autophosphorylation
GO:0048813 P dendrite morphogenesis
GO:0070062 C extracellular exosome
GO:2000311 P regulation of AMPA receptor activity
FPKM:0.64 TPM:0.28
3593 A_BomaMSG_c13836_g1_i2
308bp
myosin-IIIb-like_isoform_X2_[Bombyx_mori]
GO:0000146 F microfilament motor activity
GO:0000166 F nucleotide binding
GO:0001917 C photoreceptor inner segment
GO:0003774 F cytoskeletal motor activity
GO:0003779 F actin binding
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0005516 F calmodulin binding
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0006468 P protein phosphorylation
GO:0007601 P visual perception
GO:0007605 P sensory perception of sound
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016459 C myosin complex
GO:0016740 F transferase activity
GO:0018105 P peptidyl-serine phosphorylation
GO:0018107 P peptidyl-threonine phosphorylation
GO:0030175 C filopodium
GO:0030898 F microfilament motor activity
GO:0031941 C filamentous actin
GO:0032426 C stereocilium tip
GO:0032433 C filopodium tip
GO:0043531 F ADP binding
GO:0046777 P protein autophosphorylation
GO:0048839 P inner ear development
GO:0050896 P response to stimulus
GO:0051015 F actin filament binding
GO:0051491 P positive regulation of filopodium assembly
GO:0060002 F plus-end directed microfilament motor activity
FPKM:2.37 TPM:1.06
3594 A_BomaMSG_c13838_g1_i1
538bp
ribosomal_protein_S11_isoform_2_[Bombyx_mori]
GO:0001649 P osteoblast differentiation
GO:0003674 F molecular_function
GO:0003723 F RNA binding
GO:0003735 F structural constituent of ribosome
GO:0005622 C intracellular anatomical structure
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0005840 C ribosome
GO:0005925 C focal adhesion
GO:0006412 P translation
GO:0008150 P biological_process
GO:0016020 C membrane
GO:0019843 F rRNA binding
GO:0022627 C cytosolic small ribosomal subunit
GO:0030529 C ribonucleoprotein complex
GO:0044822 F RNA binding
GO:0070062 C extracellular exosome
FPKM:824.15 TPM:368.29
3595 A_BomaMSG_c13839_g1_i1
206bp
ribosomal_protein_S6_kinase,_90_kDa_[Bombyx_mori]
FPKM:0.00 TPM:0.00
3596 A_BomaMSG_c13839_g1_i2
285bp
ribosomal_protein_S6_kinase,_90_kDa_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000287 F magnesium ion binding
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0005524 F ATP binding
GO:0005622 C intracellular anatomical structure
GO:0006468 P protein phosphorylation
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0035556 P intracellular signal transduction
FPKM:1.99 TPM:0.89
3597 A_BomaMSG_c1383_g1_i1
330bp
FPKM:2.61 TPM:1.17
3598 A_BomaMSG_c13841_g1_i1
285bp
FPKM:0.00 TPM:0.00
3599 A_BomaMSG_c13842_g1_i1
436bp
FPKM:4.23 TPM:1.89
3600 A_BomaMSG_c13842_g1_i2
332bp
FPKM:0.00 TPM:0.00
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