SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search Assembled RNA-Seq

previous next from show/42653
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
3361 A_BomaMSG_c13600_g1_i1
1586bp
eukaryotic_translation_initiation_factor_3_subunit_M_[Bombyx_mori]
GO:0001731 P formation of translation preinitiation complex
GO:0003743 F translation initiation factor activity
GO:0005737 C cytoplasm
GO:0005852 C eukaryotic translation initiation factor 3 complex
GO:0006412 P translation
GO:0006413 P translational initiation
GO:0006446 P regulation of translational initiation
GO:0016282 C eukaryotic 43S preinitiation complex
GO:0033290 C eukaryotic 48S preinitiation complex
FPKM:24.99 TPM:11.17
3362 A_BomaMSG_c13601_g1_i1
255bp
phosphofurin_acidic_cluster_sorting_protein_1-like_[Helicoverpa_armigera]
FPKM:6.35 TPM:2.84
3363 A_BomaMSG_c13602_g1_i1
460bp
FPKM:3.69 TPM:1.65
3364 A_BomaMSG_c13603_g1_i1
363bp
uncharacterized_protein_LOC101746654_[Bombyx_mori]
FPKM:2.84 TPM:1.27
3365 A_BomaMSG_c13604_g1_i1
415bp
FPKM:2.54 TPM:1.13
3366 A_BomaMSG_c13605_g1_i1
266bp
putative_cAMP-dependent_protein_kinase_catalytic_subunit,_partial_[Danaus_plexippus_plexippus]
GO:0000166 F nucleotide binding
GO:0001664 F G protein-coupled receptor binding
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0004703 F G protein-coupled receptor kinase activity
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0006468 P protein phosphorylation
GO:0007165 P signal transduction
GO:0007186 P G protein-coupled receptor signaling pathway
GO:0007474 P imaginal disc-derived wing vein specification
GO:0007603 P phototransduction, visible light
GO:0016060 P metarhodopsin inactivation
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0035091 F phosphatidylinositol binding
GO:0050254 F rhodopsin kinase activity
FPKM:5.76 TPM:2.58
3367 A_BomaMSG_c13606_g1_i1
320bp
FPKM:3.16 TPM:1.41
3368 A_BomaMSG_c13607_g1_i1
868bp
uncharacterized_protein_LOC101743491_isoform_X2_[Bombyx_mori]
FPKM:3.56 TPM:1.59
3369 A_BomaMSG_c13608_g1_i1
448bp
serine/threonine-protein_phosphatase_2A_regulatory_subunit_B''_subunit_gamma_[Bombyx_mori]
GO:0000226 P microtubule cytoskeleton organization
GO:0001782 P B cell homeostasis
GO:0002759 P regulation of antimicrobial humoral response
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005813 C centrosome
GO:0005819 C spindle
GO:0030865 P cortical cytoskeleton organization
GO:0032147 P activation of protein kinase activity
GO:0043029 P T cell homeostasis
GO:0045579 P positive regulation of B cell differentiation
GO:0046872 F metal ion binding
GO:0048536 P spleen development
GO:0050864 P regulation of B cell activation
GO:0051900 P regulation of mitochondrial depolarization
FPKM:5.19 TPM:2.32
3370 A_BomaMSG_c13609_g1_i1
939bp
protein_FAM151A_isoform_X1_[Bombyx_mori]
GO:0005515 F protein binding
FPKM:4.27 TPM:1.91
3371 A_BomaMSG_c1360_g1_i1
354bp
probable_ATP-dependent_RNA_helicase_DDX55_homolog_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003674 F molecular_function
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005575 C cellular_component
GO:0008150 P biological_process
GO:0010501 P RNA secondary structure unwinding
GO:0016787 F hydrolase activity
FPKM:1.65 TPM:0.74
3372 A_BomaMSG_c1360_g1_i2
213bp
putative_ATP-dependent_RNA_helicase_DDX55_[Operophtera_brumata]
GO:0000166 F nucleotide binding
GO:0003674 F molecular_function
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005575 C cellular_component
GO:0008150 P biological_process
GO:0010501 P RNA secondary structure unwinding
GO:0016787 F hydrolase activity
FPKM:2.05 TPM:0.92
3373 A_BomaMSG_c13610_g1_i1
831bp
probable_ATP-dependent_RNA_helicase_DDX10_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003724 F RNA helicase activity
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0010501 P RNA secondary structure unwinding
GO:0016787 F hydrolase activity
GO:0044822 F RNA binding
FPKM:2.47 TPM:1.10
3374 A_BomaMSG_c13611_g1_i1
233bp
FPKM:3.18 TPM:1.42
3375 A_BomaMSG_c13612_g1_i1
649bp
RNA_helicase_Mov10l1_isoform_X3_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000932 C P-body
GO:0003723 F RNA binding
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0016787 F hydrolase activity
GO:0031047 P gene silencing by RNA
GO:0035279 P miRNA-mediated gene silencing by mRNA destabilization
FPKM:2.43 TPM:1.09
3376 A_BomaMSG_c13613_g1_i1
737bp
TELO2-interacting_protein_1_homolog_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005737 C cytoplasm
GO:0031931 C TORC1 complex
GO:0031932 C TORC2 complex
GO:0032006 P regulation of TOR signaling
FPKM:1.84 TPM:0.82
3377 A_BomaMSG_c13614_g1_i1
524bp
SNF-related_serine/threonine-protein_kinase_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000287 F magnesium ion binding
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006468 P protein phosphorylation
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0030099 P myeloid cell differentiation
GO:0035556 P intracellular signal transduction
GO:0046872 F metal ion binding
FPKM:2.52 TPM:1.13
3378 A_BomaMSG_c13615_g1_i1
853bp
uncharacterized_protein_LOC101743708_[Bombyx_mori]
FPKM:3.16 TPM:1.41
3379 A_BomaMSG_c13616_g1_i1
277bp
integrator_complex_subunit_8_[Helicoverpa_armigera]
FPKM:0.80 TPM:0.36
3380 A_BomaMSG_c13616_g1_i2
446bp
LOW_QUALITY_PROTEIN:_integrator_complex_subunit_8_[Bombyx_mori]
FPKM:4.20 TPM:1.88
3381 A_BomaMSG_c13617_g1_i1
381bp
FPKM:4.95 TPM:2.21
3382 A_BomaMSG_c13618_g1_i1
352bp
FPKM:2.00 TPM:0.89
3383 A_BomaMSG_c13619_g1_i1
638bp
FPKM:3.03 TPM:1.36
3384 A_BomaMSG_c1361_g1_i1
356bp
guanine_nucleotide_exchange_factor_subunit_Rich_[Bombyx_mori]
GO:0005085 F guanyl-nucleotide exchange factor activity
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0017112 F guanyl-nucleotide exchange factor activity
GO:0017137 F small GTPase binding
GO:0032588 C trans-Golgi network membrane
GO:0034066 C Ric1-Rgp1 guanyl-nucleotide exchange factor complex
GO:0042147 P retrograde transport, endosome to Golgi
GO:0043234 C protein-containing complex
GO:0043547 P positive regulation of GTPase activity
GO:1903363 P negative regulation of cellular protein catabolic process
FPKM:2.94 TPM:1.31
3385 A_BomaMSG_c13620_g1_i1
430bp
uncharacterized_protein_LOC110385892_[Bombyx_mori]
FPKM:6.49 TPM:2.90
3386 A_BomaMSG_c13621_g1_i1
444bp
FPKM:1.41 TPM:0.63
3387 A_BomaMSG_c13621_g1_i2
289bp
FPKM:2.34 TPM:1.05
3388 A_BomaMSG_c13622_g1_i1
398bp
FPKM:6.24 TPM:2.79
3389 A_BomaMSG_c13623_g1_i1
273bp
uncharacterized_protein_LOC101743708_[Bombyx_mori]
FPKM:5.99 TPM:2.68
3390 A_BomaMSG_c13625_g1_i1
638bp
FPKM:2.76 TPM:1.23
previous next from show/42653

- SilkBase 1999-2023 -