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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
3331 A_BomaMSG_c13572_g1_i1
409bp
FPKM:6.49 TPM:2.90
3332 A_BomaMSG_c13573_g1_i1
344bp
calcium_homeostasis_endoplasmic_reticulum_protein_isoform_X1_[Bombyx_mori]
FPKM:4.50 TPM:2.01
3333 A_BomaMSG_c13574_g1_i1
218bp
FPKM:3.83 TPM:1.71
3334 A_BomaMSG_c13577_g1_i1
543bp
FPKM:4.11 TPM:1.84
3335 A_BomaMSG_c13578_g1_i1
292bp
Uncharacterized_protein_OBRU01_02600_[Operophtera_brumata]
GO:0000398 P mRNA splicing, via spliceosome
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005686 C U2 snRNP
GO:0005689 C U12-type spliceosomal complex
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0016363 C nuclear matrix
GO:0016607 C nuclear speck
GO:0044822 F RNA binding
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
FPKM:5.67 TPM:2.53
3336 A_BomaMSG_c13579_g1_i1
360bp
FPKM:2.56 TPM:1.14
3337 A_BomaMSG_c1357_g1_i1
495bp
transcription_termination_factor_3,_mitochondrial_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0003690 F double-stranded DNA binding
GO:0005739 C mitochondrion
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0044212 F transcription cis-regulatory region binding
GO:0045892 P negative regulation of transcription, DNA-templated
FPKM:4.10 TPM:1.83
3338 A_BomaMSG_c13581_g1_i1
1403bp
PDZ_and_LIM_domain_protein_Zasp_isoform_X1_[Helicoverpa_armigera]
GO:0001725 C stress fiber
GO:0001952 P regulation of cell-matrix adhesion
GO:0003779 F actin binding
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005915 C zonula adherens
GO:0005925 C focal adhesion
GO:0005927 C muscle tendon junction
GO:0008270 F zinc ion binding
GO:0015629 C actin cytoskeleton
GO:0016323 C basolateral plasma membrane
GO:0030018 C Z disc
GO:0030239 P myofibril assembly
GO:0031252 C cell leading edge
GO:0045177 C apical part of cell
GO:0045178 C basal part of cell
GO:0046872 F metal ion binding
GO:0051371 F muscle alpha-actinin binding
GO:0061061 P muscle structure development
FPKM:42.63 TPM:19.05
3339 A_BomaMSG_c13584_g1_i1
447bp
FPKM:3.17 TPM:1.42
3340 A_BomaMSG_c13585_g1_i1
368bp
FPKM:1.85 TPM:0.83
3341 A_BomaMSG_c13587_g1_i1
274bp
LOW_QUALITY_PROTEIN:_spectrin_beta_chain,_non-erythrocytic_2_[Bombyx_mori]
FPKM:7.02 TPM:3.14
3342 A_BomaMSG_c13588_g1_i1
516bp
formin-binding_protein_1-like_isoform_X3_[Bombyx_mori]
GO:0005086 F guanyl-nucleotide exchange factor activity
GO:0005737 C cytoplasm
GO:0005764 C lysosome
GO:0005802 C trans-Golgi network
GO:0005856 C cytoskeleton
GO:0005886 C plasma membrane
GO:0005905 C clathrin-coated pit
GO:0005938 C cell cortex
GO:0006897 P endocytosis
GO:0008289 F lipid binding
GO:0016020 C membrane
GO:0016023 C cytoplasmic vesicle
GO:0016192 P vesicle-mediated transport
GO:0031410 C cytoplasmic vesicle
GO:0042802 F identical protein binding
GO:0043547 P positive regulation of GTPase activity
FPKM:4.78 TPM:2.14
3343 A_BomaMSG_c13589_g1_i1
291bp
FPKM:0.00 TPM:0.00
3344 A_BomaMSG_c13589_g1_i2
521bp
FPKM:1.63 TPM:0.73
3345 A_BomaMSG_c1358_g1_i1
316bp
probable_phosphorylase_b_kinase_regulatory_subunit_alpha_isoform_X4_[Bombyx_mori]
GO:0003824 F catalytic activity
GO:0004689 F phosphorylase kinase activity
GO:0005516 F calmodulin binding
GO:0005886 C plasma membrane
GO:0005964 C phosphorylase kinase complex
GO:0005975 P carbohydrate metabolic process
GO:0005977 P glycogen metabolic process
GO:0006468 P protein phosphorylation
GO:0008607 F phosphorylase kinase regulator activity
GO:0016020 C membrane
GO:0045859 P regulation of protein kinase activity
FPKM:3.64 TPM:1.63
3346 A_BomaMSG_c13592_g1_i1
669bp
kinesin-like_protein_KIF3A_isoform_X2_[Bombyx_mori]
FPKM:4.67 TPM:2.09
3347 A_BomaMSG_c13593_g1_i1
286bp
FPKM:3.94 TPM:1.76
3348 A_BomaMSG_c13594_g1_i1
855bp
putative_farnesoic_acid_O-methyl_transferase_[Bombyx_mori]
GO:0005576 C extracellular region
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
FPKM:19.58 TPM:8.75
3349 A_BomaMSG_c13594_g1_i2
779bp
farnesoic_acid_O-methyltransferase_[Bombyx_mori]
GO:0005576 C extracellular region
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
FPKM:18.78 TPM:8.39
3350 A_BomaMSG_c13594_g1_i3
600bp
farnesoic_acid_O-methyltransferase_[Bombyx_mori]
GO:0005576 C extracellular region
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
FPKM:63.01 TPM:28.16
3351 A_BomaMSG_c13594_g1_i4
1034bp
putative_farnesoic_acid_O-methyl_transferase_[Bombyx_mori]
GO:0005576 C extracellular region
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
FPKM:0.89 TPM:0.40
3352 A_BomaMSG_c13595_g1_i1
1528bp
hypothetical_protein_1_-_cabbage_looper_transposon_TED_(fragment)
FPKM:3.27 TPM:1.46
3353 A_BomaMSG_c13596_g1_i1
308bp
FPKM:5.52 TPM:2.47
3354 A_BomaMSG_c13596_g2_i1
284bp
FPKM:7.50 TPM:3.35
3355 A_BomaMSG_c13597_g1_i1
381bp
FPKM:0.00 TPM:0.00
3356 A_BomaMSG_c13597_g1_i2
512bp
FPKM:2.23 TPM:1.00
3357 A_BomaMSG_c13598_g1_i1
409bp
FPKM:1.82 TPM:0.81
3358 A_BomaMSG_c13599_g1_i1
435bp
actin-binding_protein_IPP_[Bombyx_mori]
GO:0004842 F ubiquitin-protein transferase activity
GO:0016567 P protein ubiquitination
GO:0031463 C Cul3-RING ubiquitin ligase complex
FPKM:5.19 TPM:2.32
3359 A_BomaMSG_c1359_g1_i1
393bp
FPKM:1.94 TPM:0.87
3360 A_BomaMSG_c135_g1_i1
390bp
FPKM:1.96 TPM:0.88
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