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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
3091 A_BomaMSG_c13345_g1_i1
543bp
FPKM:4.28 TPM:1.91
3092 A_BomaMSG_c13348_g1_i1
247bp
FPKM:4.80 TPM:2.15
3093 A_BomaMSG_c13349_g1_i1
909bp
Uncharacterized_protein_OBRU01_15802_[Operophtera_brumata]
FPKM:4.61 TPM:2.06
3094 A_BomaMSG_c13350_g1_i1
277bp
tigger_transposable_element-derived_protein_4-like_[Bombyx_mori]
FPKM:5.80 TPM:2.59
3095 A_BomaMSG_c13351_g1_i1
637bp
carboxypeptidase_E_[Bombyx_mori]
GO:0004180 F carboxypeptidase activity
GO:0004181 F metallocarboxypeptidase activity
GO:0005576 C extracellular region
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0008237 F metallopeptidase activity
GO:0008270 F zinc ion binding
GO:0016020 C membrane
GO:0016787 F hydrolase activity
GO:0030658 C transport vesicle membrane
GO:0031410 C cytoplasmic vesicle
GO:0046872 F metal ion binding
FPKM:4.84 TPM:2.16
3096 A_BomaMSG_c13352_g1_i1
345bp
Elongation_factor_Tu_GTP-binding_domain-containing_protein_1_[Papilio_machaon]
GO:0000166 F nucleotide binding
GO:0003924 F GTPase activity
GO:0005525 F GTP binding
GO:0005737 C cytoplasm
GO:0006412 P translation
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
GO:0042254 P ribosome biogenesis
GO:0042256 P mature ribosome assembly
FPKM:7.58 TPM:3.39
3097 A_BomaMSG_c13353_g1_i1
262bp
FPKM:2.92 TPM:1.30
3098 A_BomaMSG_c13354_g1_i1
207bp
zinc_finger_protein_99_isoform_X2_[Bombyx_mori]
FPKM:19.03 TPM:8.50
3099 A_BomaMSG_c13355_g1_i1
420bp
FPKM:12.70 TPM:5.68
3100 A_BomaMSG_c13356_g1_i1
766bp
WD_repeat-containing_protein_43_[Bombyx_mori]
GO:0000003 P reproduction
GO:0000132 P establishment of mitotic spindle orientation
GO:0000776 C kinetochore
GO:0001650 C fibrillar center
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0005813 C centrosome
GO:0005874 C microtubule
GO:0005875 C microtubule associated complex
GO:0005938 C cell cortex
GO:0006364 P rRNA processing
GO:0007097 P nuclear migration
GO:0008017 F microtubule binding
GO:0031023 P microtubule organizing center organization
GO:0044822 F RNA binding
GO:0045502 F dynein complex binding
GO:0047496 P vesicle transport along microtubule
GO:2000574 P obsolete regulation of microtubule motor activity
FPKM:4.15 TPM:1.86
3101 A_BomaMSG_c13357_g1_i1
545bp
cadherin-87A_[Bombyx_mori]
GO:0005509 F calcium ion binding
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0007155 P cell adhesion
GO:0007156 P homophilic cell adhesion via plasma membrane adhesion molecules
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016339 P calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules
GO:0044331 P cell-cell adhesion mediated by cadherin
GO:0046872 F metal ion binding
FPKM:2.52 TPM:1.13
3102 A_BomaMSG_c13357_g1_i2
207bp
cadherin-87A_[Bombyx_mori]
GO:0005509 F calcium ion binding
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0007155 P cell adhesion
GO:0007156 P homophilic cell adhesion via plasma membrane adhesion molecules
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016339 P calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules
GO:0044331 P cell-cell adhesion mediated by cadherin
GO:0046872 F metal ion binding
FPKM:0.21 TPM:0.09
3103 A_BomaMSG_c13358_g1_i1
778bp
FPKM:4.82 TPM:2.16
3104 A_BomaMSG_c13359_g1_i1
1088bp
tubulin_beta_chain_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003924 F GTPase activity
GO:0005200 F structural constituent of cytoskeleton
GO:0005525 F GTP binding
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005874 C microtubule
GO:0007017 P microtubule-based process
GO:0008152 P metabolic process
FPKM:2.73 TPM:1.22
3105 A_BomaMSG_c1335_g1_i1
515bp
FPKM:3.13 TPM:1.40
3106 A_BomaMSG_c13360_g1_i1
530bp
DNA-directed_RNA_polymerase_subunit_6-like_protein_[Bombyx_mori]
GO:0001054 F RNA polymerase I activity
GO:0001055 F RNA polymerase II activity
GO:0001056 F RNA polymerase III activity
GO:0003677 F DNA binding
GO:0003899 F DNA-directed 5'-3' RNA polymerase activity
GO:0005634 C nucleus
GO:0005665 C RNA polymerase II, core complex
GO:0005666 C RNA polymerase III complex
GO:0005736 C RNA polymerase I complex
GO:0006351 P transcription, DNA-templated
GO:0006360 P transcription by RNA polymerase I
GO:0006366 P transcription by RNA polymerase II
GO:0006383 P transcription by RNA polymerase III
GO:0007095 P mitotic G2 DNA damage checkpoint signaling
FPKM:35.42 TPM:15.83
3107 A_BomaMSG_c13361_g1_i1
268bp
CTL-like_protein_1_isoform_X2_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
FPKM:0.00 TPM:0.00
3108 A_BomaMSG_c13361_g1_i2
334bp
CTL-like_protein_1_isoform_X2_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
FPKM:4.75 TPM:2.12
3109 A_BomaMSG_c13364_g1_i1
613bp
uncharacterized_protein_LOC105842744,_partial_[Bombyx_mori]
FPKM:2.62 TPM:1.17
3110 A_BomaMSG_c13365_g1_i1
246bp
trafficking_protein_particle_complex_subunit_10_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005794 C Golgi apparatus
GO:0005829 C cytosol
GO:0006810 P transport
GO:0006891 P intra-Golgi vesicle-mediated transport
GO:0016192 P vesicle-mediated transport
GO:0034498 P early endosome to Golgi transport
GO:1990071 C TRAPPII protein complex
FPKM:2.77 TPM:1.24
3111 A_BomaMSG_c13366_g1_i1
495bp
eIF-2-alpha_kinase_GCN2_isoform_X1_[Bombyx_mori]
GO:0000049 F tRNA binding
GO:0000166 F nucleotide binding
GO:0002230 P positive regulation of defense response to virus by host
GO:0003723 F RNA binding
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0004694 F eukaryotic translation initiation factor 2alpha kinase activity
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0006417 P regulation of translation
GO:0006468 P protein phosphorylation
GO:0007049 P cell cycle
GO:0007050 P regulation of cell cycle
GO:0007399 P nervous system development
GO:0007612 P learning
GO:0007616 P long-term memory
GO:0010998 P regulation of translational initiation by eIF2 alpha phosphorylation
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0019081 P viral translation
GO:0030154 P cell differentiation
GO:0032792 P negative regulation of CREB transcription factor activity
GO:0034198 P cellular response to amino acid starvation
GO:0036492 P eiF2alpha phosphorylation in response to endoplasmic reticulum stress
GO:0044828 P negative regulation by host of viral genome replication
GO:0045947 P negative regulation of translational initiation
GO:0060733 P GCN2-mediated signaling
GO:0070417 P cellular response to cold
GO:0071264 P positive regulation of translational initiation in response to starvation
GO:1900273 P positive regulation of long-term synaptic potentiation
FPKM:2.54 TPM:1.13
3112 A_BomaMSG_c13367_g1_i1
229bp
LOW_QUALITY_PROTEIN:_notch-like_protein_isoform_X1_[Bombyx_mori]
FPKM:4.17 TPM:1.86
3113 A_BomaMSG_c13368_g1_i1
224bp
FPKM:0.89 TPM:0.40
3114 A_BomaMSG_c13369_g1_i1
607bp
FPKM:3.68 TPM:1.65
3115 A_BomaMSG_c13370_g1_i1
992bp
SNF4/AMP-activated_protein_kinase_gamma_subunit_isoform_X1_[Bombyx_mori]
FPKM:3.20 TPM:1.43
3116 A_BomaMSG_c13371_g1_i1
410bp
exosome_complex_component_RRP43_[Bombyx_mori]
GO:0000176 C nuclear exosome (RNase complex)
GO:0000177 C cytoplasmic exosome (RNase complex)
GO:0000178 C exosome (RNase complex)
GO:0000467 P exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0003723 F RNA binding
GO:0004532 F exoribonuclease activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006364 P rRNA processing
GO:0008150 P biological_process
GO:0017091 F mRNA 3'-UTR AU-rich region binding
GO:0034427 P nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'
GO:0034473 P U1 snRNA 3'-end processing
GO:0034475 P U4 snRNA 3'-end processing
GO:0034476 P U5 snRNA 3'-end processing
GO:0043488 P regulation of mRNA stability
GO:0043928 P exonucleolytic catabolism of deadenylated mRNA
GO:0071028 P nuclear mRNA surveillance
GO:0071035 P nuclear polyadenylation-dependent rRNA catabolic process
GO:0071038 P nuclear polyadenylation-dependent tRNA catabolic process
GO:0071042 P nuclear polyadenylation-dependent mRNA catabolic process
FPKM:9.05 TPM:4.05
3117 A_BomaMSG_c13372_g1_i1
713bp
FPKM:3.23 TPM:1.44
3118 A_BomaMSG_c13373_g1_i1
937bp
PH_domain-containing_protein_DDB_G0287875-like_isoform_X3_[Bombyx_mori]
FPKM:4.36 TPM:1.95
3119 A_BomaMSG_c13374_g1_i1
570bp
putative_transcription_factor_capicua_[Bombyx_mori]
FPKM:3.64 TPM:1.63
3120 A_BomaMSG_c13375_g1_i1
349bp
FPKM:6.08 TPM:2.72
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