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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
3061 A_BomaMSG_c13301_g1_i1
226bp
zinc_finger_protein_62_[Bombyx_mori]
FPKM:2.59 TPM:1.16
3062 A_BomaMSG_c13302_g1_i1
228bp
FPKM:4.22 TPM:1.88
3063 A_BomaMSG_c13303_g1_i1
416bp
FPKM:1.52 TPM:0.68
3064 A_BomaMSG_c13303_g2_i1
225bp
FPKM:1.75 TPM:0.78
3065 A_BomaMSG_c13303_g3_i1
259bp
FPKM:3.06 TPM:1.37
3066 A_BomaMSG_c13305_g1_i1
234bp
FPKM:1.57 TPM:0.70
3067 A_BomaMSG_c13308_g1_i1
223bp
FPKM:1.79 TPM:0.80
3068 A_BomaMSG_c13309_g1_i1
524bp
FPKM:3.96 TPM:1.77
3069 A_BomaMSG_c1330_g1_i1
318bp
uncharacterized_protein_LOC101743981_[Bombyx_mori]
FPKM:5.20 TPM:2.32
3070 A_BomaMSG_c13312_g1_i1
272bp
L-2-hydroxyglutarate_dehydrogenase,_mitochondrial_[Bombyx_mori]
GO:0005739 C mitochondrion
GO:0016491 F oxidoreductase activity
GO:0047545 F 2-hydroxyglutarate dehydrogenase activity
GO:0055114 P obsolete oxidation-reduction process
FPKM:14.26 TPM:6.37
3071 A_BomaMSG_c13313_g1_i1
209bp
uncharacterized_protein_LOC101735977_isoform_X2_[Bombyx_mori]
FPKM:3.26 TPM:1.46
3072 A_BomaMSG_c13315_g1_i1
666bp
FPKM:7.18 TPM:3.21
3073 A_BomaMSG_c13316_g1_i1
207bp
FPKM:6.72 TPM:3.00
3074 A_BomaMSG_c13320_g1_i1
412bp
FPKM:3.85 TPM:1.72
3075 A_BomaMSG_c13321_g1_i1
978bp
prostatic_acid_phosphatase_[Bombyx_mori]
GO:0003993 F acid phosphatase activity
GO:0005576 C extracellular region
GO:0005615 C extracellular space
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0005765 C lysosomal membrane
GO:0005886 C plasma membrane
GO:0006144 P purine nucleobase metabolic process
GO:0006772 P thiamine metabolic process
GO:0008253 F 5'-nucleotidase activity
GO:0009117 P nucleotide metabolic process
GO:0012506 C vesicle membrane
GO:0016021 C integral component of membrane
GO:0016311 P dephosphorylation
GO:0016787 F hydrolase activity
GO:0016791 F phosphatase activity
GO:0030175 C filopodium
GO:0042131 F thiamine phosphate phosphatase activity
GO:0042802 F identical protein binding
GO:0046085 P adenosine metabolic process
GO:0051930 P regulation of sensory perception of pain
GO:0052642 F lysophosphatidic acid phosphatase activity
GO:0060168 P positive regulation of adenosine receptor signaling pathway
GO:0070062 C extracellular exosome
FPKM:4.96 TPM:2.22
3076 A_BomaMSG_c13322_g1_i1
564bp
mediator_of_RNA_polymerase_II_transcription_subunit_1_[Bombyx_mori]
FPKM:2.46 TPM:1.10
3077 A_BomaMSG_c13328_g1_i1
848bp
transcription_factor_AP-4_[Bombyx_mori]
GO:0000978 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0001077 F DNA-binding transcription activator activity, RNA polymerase II-specific
GO:0003677 F DNA binding
GO:0003705 F DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0003713 F transcription coactivator activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0006461 P protein-containing complex assembly
GO:0006978 P DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator
GO:0008285 P negative regulation of cell population proliferation
GO:0010629 P negative regulation of gene expression
GO:0017053 C transcription repressor complex
GO:0042803 F protein homodimerization activity
GO:0042826 F histone deacetylase binding
GO:0043065 P positive regulation of apoptotic process
GO:0043392 P negative regulation of DNA binding
GO:0043565 F sequence-specific DNA binding
GO:0043922 P negative regulation by host of viral transcription
GO:0043923 P positive regulation by host of viral transcription
GO:0044212 F transcription cis-regulatory region binding
GO:0045736 P negative regulation of cyclin-dependent protein serine/threonine kinase activity
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046982 F protein heterodimerization activity
GO:0046983 F protein dimerization activity
GO:0070888 F E-box binding
GO:0071157 P regulation of cell cycle
GO:0071549 P cellular response to dexamethasone stimulus
GO:2001269 P positive regulation of cysteine-type endopeptidase activity involved in apoptotic signaling pathway
FPKM:0.00 TPM:0.00
3078 A_BomaMSG_c13328_g1_i2
1067bp
transcription_factor_AP-4_[Bombyx_mori]
GO:0000978 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0001077 F DNA-binding transcription activator activity, RNA polymerase II-specific
GO:0003677 F DNA binding
GO:0003705 F DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0003713 F transcription coactivator activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0006461 P protein-containing complex assembly
GO:0006978 P DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator
GO:0008285 P negative regulation of cell population proliferation
GO:0010629 P negative regulation of gene expression
GO:0017053 C transcription repressor complex
GO:0042803 F protein homodimerization activity
GO:0042826 F histone deacetylase binding
GO:0043065 P positive regulation of apoptotic process
GO:0043392 P negative regulation of DNA binding
GO:0043565 F sequence-specific DNA binding
GO:0043922 P negative regulation by host of viral transcription
GO:0043923 P positive regulation by host of viral transcription
GO:0044212 F transcription cis-regulatory region binding
GO:0045736 P negative regulation of cyclin-dependent protein serine/threonine kinase activity
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046982 F protein heterodimerization activity
GO:0046983 F protein dimerization activity
GO:0070888 F E-box binding
GO:0071157 P regulation of cell cycle
GO:0071549 P cellular response to dexamethasone stimulus
GO:2001269 P positive regulation of cysteine-type endopeptidase activity involved in apoptotic signaling pathway
FPKM:3.23 TPM:1.44
3079 A_BomaMSG_c1332_g1_i1
269bp
FPKM:10.68 TPM:4.77
3080 A_BomaMSG_c13331_g1_i1
257bp
FPKM:1.25 TPM:0.56
3081 A_BomaMSG_c13333_g1_i1
353bp
FPKM:3.31 TPM:1.48
3082 A_BomaMSG_c13336_g1_i1
460bp
2-aminoethanethiol_dioxygenase_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005739 C mitochondrion
GO:0016491 F oxidoreductase activity
GO:0016702 F oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
GO:0046872 F metal ion binding
GO:0047800 F cysteamine dioxygenase activity
GO:0051213 F dioxygenase activity
GO:0055114 P obsolete oxidation-reduction process
FPKM:0.87 TPM:0.39
3083 A_BomaMSG_c13339_g1_i1
781bp
E3_ubiquitin-protein_ligase_HECTD1_isoform_X2_[Bombyx_mori]
GO:0001779 P natural killer cell differentiation
GO:0001843 P neural tube closure
GO:0001892 P embryonic placenta development
GO:0003170 P heart valve development
GO:0003281 P ventricular septum development
GO:0004842 F ubiquitin-protein transferase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0035904 P aorta development
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0046872 F metal ion binding
GO:0051865 P protein autoubiquitination
GO:0060707 P trophoblast giant cell differentiation
GO:0060708 P spongiotrophoblast differentiation
GO:0061630 F ubiquitin protein ligase activity
GO:0070534 P protein K63-linked ubiquitination
GO:1903077 P negative regulation of protein localization to plasma membrane
FPKM:3.52 TPM:1.57
3084 A_BomaMSG_c1333_g1_i1
333bp
FPKM:4.04 TPM:1.80
3085 A_BomaMSG_c13340_g1_i1
285bp
FPKM:2.48 TPM:1.11
3086 A_BomaMSG_c13340_g1_i2
205bp
FPKM:0.00 TPM:0.00
3087 A_BomaMSG_c13341_g1_i1
335bp
LOW_QUALITY_PROTEIN:_CAD_protein_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003824 F catalytic activity
GO:0004070 F aspartate carbamoyltransferase activity
GO:0004088 F carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
GO:0004151 F dihydroorotase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006207 P 'de novo' pyrimidine nucleobase biosynthetic process
GO:0006221 P pyrimidine nucleotide biosynthetic process
GO:0006520 P cellular amino acid metabolic process
GO:0006541 P glutamine metabolic process
GO:0006807 P nitrogen compound metabolic process
GO:0008152 P metabolic process
GO:0008270 F zinc ion binding
GO:0016597 F amino acid binding
GO:0016740 F transferase activity
GO:0016743 F carboxyl- or carbamoyltransferase activity
GO:0016787 F hydrolase activity
GO:0016810 F hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds
GO:0016812 F hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
GO:0016874 F ligase activity
GO:0044205 P 'de novo' UMP biosynthetic process
GO:0046872 F metal ion binding
FPKM:3.99 TPM:1.79
3088 A_BomaMSG_c13342_g1_i1
449bp
probable_ATP-dependent_RNA_helicase_Dbp73D_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0006364 P rRNA processing
GO:0010501 P RNA secondary structure unwinding
GO:0016020 C membrane
GO:0016787 F hydrolase activity
GO:0042254 P ribosome biogenesis
GO:0044822 F RNA binding
FPKM:2.70 TPM:1.21
3089 A_BomaMSG_c13342_g1_i2
323bp
probable_ATP-dependent_RNA_helicase_Dbp73D_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0006364 P rRNA processing
GO:0010501 P RNA secondary structure unwinding
GO:0016020 C membrane
GO:0016787 F hydrolase activity
GO:0042254 P ribosome biogenesis
GO:0044822 F RNA binding
FPKM:0.00 TPM:0.00
3090 A_BomaMSG_c13343_g1_i1
315bp
FPKM:3.26 TPM:1.45
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