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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
3031 A_BomaMSG_c1325_g1_i1
537bp
FPKM:2.43 TPM:1.09
3032 A_BomaMSG_c13261_g1_i1
462bp
FPKM:3.02 TPM:1.35
3033 A_BomaMSG_c13269_g1_i1
210bp
FPKM:0.00 TPM:0.00
3034 A_BomaMSG_c1326_g1_i1
278bp
FPKM:3.14 TPM:1.40
3035 A_BomaMSG_c13270_g1_i1
551bp
NFX1-type_zinc_finger-containing_protein_1_[Bombyx_mori]
FPKM:3.02 TPM:1.35
3036 A_BomaMSG_c13271_g1_i1
447bp
FPKM:4.76 TPM:2.13
3037 A_BomaMSG_c13273_g1_i1
303bp
FPKM:4.82 TPM:2.16
3038 A_BomaMSG_c13274_g1_i1
871bp
eukaryotic_translation_initiation_factor_4_gamma_3_[Bombyx_mori]
FPKM:31.38 TPM:14.02
3039 A_BomaMSG_c13276_g1_i1
271bp
equilibrative_nucleoside_transporter_3_[Bombyx_mori]
GO:0005337 F nucleoside transmembrane transporter activity
GO:0005575 C cellular_component
GO:0005887 C integral component of plasma membrane
GO:0006810 P transport
GO:0007595 P lactation
GO:0015853 P adenine transport
GO:0015854 P guanine transport
GO:0015858 P nucleoside transport
GO:0015862 P uridine transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0032869 P cellular response to insulin stimulus
GO:0035344 P hypoxanthine transport
GO:0035364 P thymine transport
GO:1901642 P nucleoside transmembrane transport
FPKM:2.77 TPM:1.24
3040 A_BomaMSG_c13278_g1_i1
273bp
FPKM:3.27 TPM:1.46
3041 A_BomaMSG_c13279_g1_i1
571bp
FPKM:5.12 TPM:2.29
3042 A_BomaMSG_c13281_g1_i1
249bp
FPKM:4.03 TPM:1.80
3043 A_BomaMSG_c13282_g1_i1
233bp
FPKM:1.59 TPM:0.71
3044 A_BomaMSG_c13282_g2_i1
261bp
histone-lysine_N-methyltransferase_2D_isoform_X1_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0005576 C extracellular region
GO:0005737 C cytoplasm
GO:0008150 P biological_process
FPKM:4.21 TPM:1.88
3045 A_BomaMSG_c13283_g1_i1
350bp
protein_GPR107_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005769 C early endosome
GO:0005794 C Golgi apparatus
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030136 C clathrin-coated vesicle
GO:0032050 F clathrin heavy chain binding
GO:0072583 P clathrin-dependent endocytosis
FPKM:13.10 TPM:5.86
3046 A_BomaMSG_c13284_g1_i1
541bp
zinc_finger_protein_699_isoform_X4_[Bombyx_mori]
FPKM:2.24 TPM:1.00
3047 A_BomaMSG_c13284_g1_i2
215bp
zinc_finger_protein_699_isoform_X4_[Bombyx_mori]
FPKM:0.00 TPM:0.00
3048 A_BomaMSG_c13285_g1_i1
264bp
serine/threonine-protein_kinase_par-1_isoform_X4_[Bombyx_mori]
FPKM:5.86 TPM:2.62
3049 A_BomaMSG_c13286_g1_i1
333bp
tropomodulin-1_isoform_X7_[Bombyx_mori]
GO:0003779 F actin binding
GO:0005523 F tropomyosin binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005856 C cytoskeleton
GO:0005865 C striated muscle thin filament
GO:0006936 P muscle contraction
GO:0007015 P actin filament organization
GO:0008180 C COP9 signalosome
GO:0008344 P adult locomotory behavior
GO:0016020 C membrane
GO:0030016 C myofibril
GO:0030017 C sarcomere
GO:0030049 P muscle filament sliding
GO:0030239 P myofibril assembly
GO:0030863 C cortical cytoskeleton
GO:0051015 F actin filament binding
GO:0051694 P pointed-end actin filament capping
GO:0070307 P lens fiber cell development
FPKM:9.91 TPM:4.43
3050 A_BomaMSG_c13287_g1_i1
243bp
FPKM:5.00 TPM:2.23
3051 A_BomaMSG_c13288_g1_i1
552bp
FPKM:4.86 TPM:2.17
3052 A_BomaMSG_c13289_g1_i1
266bp
tyrosine--tRNA_ligase,_mitochondrial_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003723 F RNA binding
GO:0004812 F aminoacyl-tRNA ligase activity
GO:0004831 F tyrosine-tRNA ligase activity
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005759 C mitochondrial matrix
GO:0005829 C cytosol
GO:0006412 P translation
GO:0006418 P tRNA aminoacylation for protein translation
GO:0006437 P tyrosyl-tRNA aminoacylation
GO:0016874 F ligase activity
GO:0043039 P tRNA aminoacylation
GO:0070184 P mitochondrial tyrosyl-tRNA aminoacylation
FPKM:5.19 TPM:2.32
3053 A_BomaMSG_c13289_g1_i2
243bp
tyrosine--tRNA_ligase,_mitochondrial_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003723 F RNA binding
GO:0004812 F aminoacyl-tRNA ligase activity
GO:0004831 F tyrosine-tRNA ligase activity
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005759 C mitochondrial matrix
GO:0005829 C cytosol
GO:0006412 P translation
GO:0006418 P tRNA aminoacylation for protein translation
GO:0006437 P tyrosyl-tRNA aminoacylation
GO:0016874 F ligase activity
GO:0043039 P tRNA aminoacylation
GO:0070184 P mitochondrial tyrosyl-tRNA aminoacylation
FPKM:0.00 TPM:0.00
3054 A_BomaMSG_c1328_g1_i1
425bp
HEAT_repeat-containing_protein_5B_[Bombyx_mori]
FPKM:0.00 TPM:0.00
3055 A_BomaMSG_c1328_g1_i2
710bp
HEAT_repeat-containing_protein_5B_[Bombyx_mori]
FPKM:1.68 TPM:0.75
3056 A_BomaMSG_c13292_g1_i1
712bp
uncharacterized_protein_LOC101743270_isoform_X5_[Bombyx_mori]
GO:0001522 P pseudouridine synthesis
GO:0004730 F pseudouridylate synthase activity
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
GO:0016798 F hydrolase activity, acting on glycosyl bonds
GO:0016829 F lyase activity
GO:0046113 P nucleobase catabolic process
GO:0046872 F metal ion binding
FPKM:3.95 TPM:1.77
3057 A_BomaMSG_c13292_g1_i2
384bp
uncharacterized_protein_LOC101743270_isoform_X5_[Bombyx_mori]
GO:0001522 P pseudouridine synthesis
GO:0004730 F pseudouridylate synthase activity
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
GO:0016798 F hydrolase activity, acting on glycosyl bonds
GO:0016829 F lyase activity
GO:0046113 P nucleobase catabolic process
GO:0046872 F metal ion binding
FPKM:0.00 TPM:0.00
3058 A_BomaMSG_c13298_g1_i1
715bp
28_kDa_heat-_and_acid-stable_phosphoprotein_[Bombyx_mori]
GO:0007165 P signal transduction
GO:0008283 P cell population proliferation
GO:0044822 F RNA binding
FPKM:54.69 TPM:24.44
3059 A_BomaMSG_c1329_g1_i1
214bp
protein_tramtrack,_beta_isoform_isoform_X1_[Helicoverpa_armigera]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000978 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0000980 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0001078 F DNA-binding transcription repressor activity, RNA polymerase II-specific
GO:0001709 P cell fate determination
GO:0001964 P startle response
GO:0002121 P inter-male aggressive behavior
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003682 F chromatin binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005700 C polytene chromosome
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007298 P border follicle cell migration
GO:0007422 P peripheral nervous system development
GO:0007426 P tracheal outgrowth, open tracheal system
GO:0007476 P imaginal disc-derived wing morphogenesis
GO:0008360 P regulation of cell shape
GO:0016476 P regulation of embryonic cell shape
GO:0017053 C transcription repressor complex
GO:0030707 P ovarian follicle cell development
GO:0031208 F POZ domain binding
GO:0031987 P locomotion involved in locomotory behavior
GO:0035001 P dorsal trunk growth, open tracheal system
GO:0035147 P branch fusion, open tracheal system
GO:0035151 P regulation of tube size, open tracheal system
GO:0040003 P chitin-based cuticle development
GO:0042675 P compound eye cone cell differentiation
GO:0042682 P regulation of compound eye cone cell fate specification
GO:0042803 F protein homodimerization activity
GO:0043388 P positive regulation of DNA binding
GO:0045467 P R7 cell development
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046843 P dorsal appendage formation
GO:0046872 F metal ion binding
GO:0048053 P R1/R6 development
GO:0048666 P neuron development
GO:0048750 P compound eye corneal lens morphogenesis
GO:0048813 P dendrite morphogenesis
GO:0048854 P brain morphogenesis
GO:0060446 P branching involved in open tracheal system development
FPKM:7.08 TPM:3.16
3060 A_BomaMSG_c13300_g1_i1
207bp
FPKM:1.12 TPM:0.50
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