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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
3001 A_BomaMSG_c13225_g1_i1
412bp
uncharacterized_protein_LOC101739352_[Bombyx_mori]
GO:0001077 F DNA-binding transcription activator activity, RNA polymerase II-specific
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0005705 C polytene chromosome interband
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006366 P transcription by RNA polymerase II
GO:0007416 P synapse assembly
GO:0007611 P learning or memory
GO:0007613 P memory
GO:0007616 P long-term memory
GO:0008345 P larval locomotory behavior
GO:0008355 P olfactory learning
GO:0040011 P locomotion
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0048813 P dendrite morphogenesis
GO:0050773 P regulation of dendrite development
FPKM:4.88 TPM:2.18
3002 A_BomaMSG_c13227_g1_i1
658bp
GTPase_Era,_mitochondrial_isoform_X2_[Bombyx_mori]
GO:0000028 P ribosomal small subunit assembly
GO:0000166 F nucleotide binding
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005525 F GTP binding
GO:0005622 C intracellular anatomical structure
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0005759 C mitochondrial matrix
GO:0015629 C actin cytoskeleton
GO:0016020 C membrane
GO:0019843 F rRNA binding
GO:0042254 P ribosome biogenesis
GO:0043024 F ribosomal small subunit binding
GO:0044822 F RNA binding
GO:0045111 C intermediate filament cytoskeleton
FPKM:3.05 TPM:1.36
3003 A_BomaMSG_c13229_g1_i1
285bp
zinc_finger_protein_320_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007275 P multicellular organism development
GO:0030154 P cell differentiation
GO:0035035 F histone acetyltransferase binding
GO:0045670 P regulation of osteoclast differentiation
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
FPKM:2.48 TPM:1.11
3004 A_BomaMSG_c1322_g1_i1
216bp
FPKM:2.95 TPM:1.32
3005 A_BomaMSG_c13230_g1_i1
415bp
uncharacterized_protein_LOC101739530_isoform_X5_[Bombyx_mori]
FPKM:1.27 TPM:0.57
3006 A_BomaMSG_c13232_g1_i1
377bp
FPKM:1.27 TPM:0.57
3007 A_BomaMSG_c13232_g1_i2
277bp
FPKM:4.59 TPM:2.05
3008 A_BomaMSG_c13233_g1_i1
433bp
FPKM:0.34 TPM:0.15
3009 A_BomaMSG_c13233_g1_i2
444bp
FPKM:1.96 TPM:0.87
3010 A_BomaMSG_c13235_g1_i1
279bp
FPKM:7.27 TPM:3.25
3011 A_BomaMSG_c13239_g1_i1
317bp
ATP-dependent_RNA_helicase_DDX24_[Bombyx_mori]
FPKM:2.01 TPM:0.90
3012 A_BomaMSG_c13241_g1_i1
317bp
FPKM:1.21 TPM:0.54
3013 A_BomaMSG_c13242_g1_i1
1827bp
26S_proteasome_non-ATPase_regulatory_subunit_11_[Bombyx_mori]
GO:0000502 C proteasome complex
GO:0005515 F protein binding
GO:0005838 C proteasome regulatory particle
GO:0005875 C microtubule associated complex
GO:0008541 C proteasome regulatory particle, lid subcomplex
GO:0043161 P proteasome-mediated ubiquitin-dependent protein catabolic process
FPKM:41.31 TPM:18.46
3014 A_BomaMSG_c13242_g1_i2
1848bp
26S_proteasome_non-ATPase_regulatory_subunit_11_[Bombyx_mori]
GO:0000502 C proteasome complex
GO:0005515 F protein binding
GO:0005838 C proteasome regulatory particle
GO:0005875 C microtubule associated complex
GO:0008541 C proteasome regulatory particle, lid subcomplex
GO:0043161 P proteasome-mediated ubiquitin-dependent protein catabolic process
FPKM:21.62 TPM:9.66
3015 A_BomaMSG_c13243_g1_i1
285bp
FPKM:0.99 TPM:0.44
3016 A_BomaMSG_c13244_g1_i1
327bp
FPKM:3.42 TPM:1.53
3017 A_BomaMSG_c13246_g1_i1
246bp
PREDICTED:_ankyrin-3-like_[Amyelois_transitella]
GO:0004518 F nuclease activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
FPKM:2.77 TPM:1.24
3018 A_BomaMSG_c13247_g1_i1
272bp
FPKM:4.94 TPM:2.21
3019 A_BomaMSG_c13248_g1_i1
207bp
meiosis-specific_with_OB_domain-containing_protein_isoform_X1_[Bombyx_mori]
FPKM:4.48 TPM:2.00
3020 A_BomaMSG_c13249_g1_i1
259bp
hydroxylysine_kinase_[Bombyx_mori]
FPKM:4.90 TPM:2.19
3021 A_BomaMSG_c1324_g1_i1
368bp
FPKM:2.16 TPM:0.96
3022 A_BomaMSG_c13253_g1_i1
240bp
FPKM:2.08 TPM:0.93
3023 A_BomaMSG_c13253_g1_i2
445bp
FPKM:2.09 TPM:0.93
3024 A_BomaMSG_c13254_g1_i1
1342bp
uncharacterized_protein_LOC101737807_[Bombyx_mori]
FPKM:155.37 TPM:69.43
3025 A_BomaMSG_c13254_g1_i2
1470bp
uncharacterized_protein_LOC101737807_[Bombyx_mori]
FPKM:5.25 TPM:2.35
3026 A_BomaMSG_c13255_g1_i1
263bp
FPKM:2.96 TPM:1.32
3027 A_BomaMSG_c13257_g1_i1
1242bp
activating_signal_cointegrator_1_complex_subunit_1_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005667 C transcription regulator complex
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
FPKM:21.11 TPM:9.43
3028 A_BomaMSG_c13257_g1_i2
1209bp
activating_signal_cointegrator_1_complex_subunit_1_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005667 C transcription regulator complex
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
FPKM:7.79 TPM:3.48
3029 A_BomaMSG_c13259_g1_i1
400bp
carbohydrate-responsive_element-binding_protein_isoform_X1_[Bombyx_mori]
FPKM:1.37 TPM:0.61
3030 A_BomaMSG_c13259_g1_i2
647bp
carbohydrate-responsive_element-binding_protein_isoform_X5_[Bombyx_mori]
GO:0000989 F obsolete transcription factor activity, transcription factor binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005741 C mitochondrial outer membrane
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0016020 C membrane
GO:0046983 F protein dimerization activity
GO:1900402 P obsolete regulation of carbohydrate metabolic process by regulation of transcription from RNA polymerase II promoter
FPKM:2.02 TPM:0.90
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