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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
2611 A_BomaMSG_c12835_g1_i1
245bp
FPKM:9.79 TPM:4.38
2612 A_BomaMSG_c12836_g1_i1
754bp
MPN_domain-containing_protein_CG4751_isoform_X2_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0006508 P proteolysis
GO:0008150 P biological_process
GO:0008233 F peptidase activity
GO:0016787 F hydrolase activity
FPKM:6.13 TPM:2.74
2613 A_BomaMSG_c12837_g1_i1
230bp
FPKM:5.76 TPM:2.58
2614 A_BomaMSG_c12838_g1_i1
254bp
FPKM:2.56 TPM:1.15
2615 A_BomaMSG_c12839_g1_i1
432bp
exosome_complex_exonuclease_RRP44_[Bombyx_mori]
GO:0000175 F 3'-5'-exoribonuclease activity
GO:0000176 C nuclear exosome (RNase complex)
GO:0000177 C cytoplasmic exosome (RNase complex)
GO:0000178 C exosome (RNase complex)
GO:0003723 F RNA binding
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0004527 F exonuclease activity
GO:0005085 F guanyl-nucleotide exchange factor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006364 P rRNA processing
GO:0006402 P mRNA catabolic process
GO:0016020 C membrane
GO:0016075 P rRNA catabolic process
GO:0016787 F hydrolase activity
GO:0043488 P regulation of mRNA stability
GO:0043547 P positive regulation of GTPase activity
GO:0043928 P exonucleolytic catabolism of deadenylated mRNA
GO:0071034 P CUT catabolic process
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0090503 P RNA phosphodiester bond hydrolysis, exonucleolytic
FPKM:4.53 TPM:2.03
2616 A_BomaMSG_c12840_g1_i1
435bp
zinc_finger_protein_287_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0005123 F death receptor binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008168 F methyltransferase activity
GO:0016740 F transferase activity
GO:0030308 P negative regulation of cell growth
GO:0031670 P cellular response to nutrient
GO:0032259 P methylation
GO:0035097 C histone methyltransferase complex
GO:0046872 F metal ion binding
GO:0071363 P cellular response to growth factor stimulus
GO:1990226 F histone methyltransferase binding
FPKM:2.36 TPM:1.05
2617 A_BomaMSG_c12842_g1_i1
451bp
UPF0545_protein_C22orf39_homolog_isoform_X1_[Bombyx_mori]
FPKM:0.50 TPM:0.22
2618 A_BomaMSG_c12842_g1_i2
440bp
UPF0545_protein_C22orf39_homolog_isoform_X1_[Bombyx_mori]
FPKM:1.57 TPM:0.70
2619 A_BomaMSG_c12843_g1_i1
443bp
PREDICTED:_uncharacterized_protein_LOC106140897_[Amyelois_transitella]
GO:0003964 F RNA-directed DNA polymerase activity
GO:0005575 C cellular_component
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006313 P transposition, DNA-mediated
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
FPKM:1.38 TPM:0.62
2620 A_BomaMSG_c12844_g1_i1
226bp
FPKM:5.18 TPM:2.32
2621 A_BomaMSG_c12844_g1_i2
205bp
FPKM:0.00 TPM:0.00
2622 A_BomaMSG_c12845_g1_i1
244bp
FPKM:0.99 TPM:0.44
2623 A_BomaMSG_c12845_g1_i2
323bp
FPKM:1.40 TPM:0.62
2624 A_BomaMSG_c12846_g1_i1
752bp
adenylate_cyclase_type_8_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0004016 F adenylate cyclase activity
GO:0005515 F protein binding
GO:0005516 F calmodulin binding
GO:0005524 F ATP binding
GO:0005622 C intracellular anatomical structure
GO:0005886 C plasma membrane
GO:0006171 P cAMP biosynthetic process
GO:0007189 P adenylate cyclase-activating G protein-coupled receptor signaling pathway
GO:0007193 P adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway
GO:0008022 F protein C-terminus binding
GO:0008294 F calcium- and calmodulin-responsive adenylate cyclase activity
GO:0009190 P cyclic nucleotide biosynthetic process
GO:0014070 P response to organic cyclic compound
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016829 F lyase activity
GO:0016849 F phosphorus-oxygen lyase activity
GO:0019933 P cAMP-mediated signaling
GO:0035556 P intracellular signal transduction
GO:0046872 F metal ion binding
GO:0047485 F protein N-terminus binding
GO:0071277 P cellular response to calcium ion
FPKM:1.34 TPM:0.60
2625 A_BomaMSG_c12847_g1_i1
294bp
FPKM:3.73 TPM:1.67
2626 A_BomaMSG_c12847_g2_i1
604bp
FPKM:2.97 TPM:1.33
2627 A_BomaMSG_c12848_g1_i1
440bp
FPKM:2.78 TPM:1.24
2628 A_BomaMSG_c12849_g1_i1
551bp
FPKM:5.37 TPM:2.40
2629 A_BomaMSG_c1284_g1_i1
230bp
RNA-binding_protein_25_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005737 C cytoplasm
GO:0006397 P mRNA processing
GO:0006915 P apoptotic process
GO:0008380 P RNA splicing
GO:0016607 C nuclear speck
GO:0042981 P regulation of apoptotic process
GO:0044822 F RNA binding
FPKM:4.12 TPM:1.84
2630 A_BomaMSG_c12850_g1_i1
971bp
UDP-glycosyltransferase_UGT44A1_[Bombyx_mori]
GO:0008152 P metabolic process
GO:0016740 F transferase activity
GO:0016757 F glycosyltransferase activity
GO:0016758 F hexosyltransferase activity
FPKM:2.13 TPM:0.95
2631 A_BomaMSG_c12852_g1_i1
518bp
FPKM:3.29 TPM:1.47
2632 A_BomaMSG_c12853_g1_i1
876bp
MPN_domain-containing_protein_CG4751_isoform_X1_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0006508 P proteolysis
GO:0008150 P biological_process
GO:0008233 F peptidase activity
GO:0016787 F hydrolase activity
FPKM:4.08 TPM:1.82
2633 A_BomaMSG_c12854_g1_i1
435bp
patronin_isoform_X15_[Bombyx_mori]
FPKM:0.00 TPM:0.00
2634 A_BomaMSG_c12854_g1_i2
496bp
patronin_isoform_X15_[Bombyx_mori]
FPKM:2.53 TPM:1.13
2635 A_BomaMSG_c12855_g1_i1
238bp
FPKM:5.27 TPM:2.35
2636 A_BomaMSG_c12856_g1_i1
246bp
leucine-rich_repeat_flightless-interacting_protein_2_[Bombyx_mori]
GO:0007275 P multicellular organism development
GO:0009950 P dorsal/ventral axis specification
GO:0016055 P Wnt signaling pathway
GO:0030275 F LRR domain binding
FPKM:0.00 TPM:0.00
2637 A_BomaMSG_c12856_g1_i2
396bp
leucine-rich_repeat_flightless-interacting_protein_2_[Bombyx_mori]
GO:0016055 P Wnt signaling pathway
GO:0030275 F LRR domain binding
FPKM:9.29 TPM:4.15
2638 A_BomaMSG_c12858_g1_i1
473bp
FPKM:1.65 TPM:0.74
2639 A_BomaMSG_c12858_g1_i2
492bp
FPKM:0.60 TPM:0.27
2640 A_BomaMSG_c12859_g1_i1
769bp
FPKM:5.33 TPM:2.38
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