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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
2401 A_BomaMSG_c12598_g2_i1
346bp
zinc_finger_protein_569_isoform_X2_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008270 F zinc ion binding
GO:0046872 F metal ion binding
FPKM:3.77 TPM:1.69
2402 A_BomaMSG_c12599_g1_i1
735bp
alpha,alpha-trehalose-phosphate_synthase_[UDP-forming]_isoform_X2_[Bombyx_mori]
GO:0003824 F catalytic activity
GO:0004805 F trehalose-phosphatase activity
GO:0005992 P trehalose biosynthetic process
GO:0016311 P dephosphorylation
GO:0016787 F hydrolase activity
FPKM:2.19 TPM:0.98
2403 A_BomaMSG_c1259_g1_i1
302bp
uncharacterized_protein_LOC101738354_isoform_X1_[Bombyx_mori]
FPKM:4.41 TPM:1.97
2404 A_BomaMSG_c12600_g1_i1
361bp
FPKM:6.37 TPM:2.85
2405 A_BomaMSG_c12601_g1_i1
374bp
FPKM:2.10 TPM:0.94
2406 A_BomaMSG_c12602_g1_i1
400bp
hypothetical_protein_[Acinetobacter_baumannii]
FPKM:6.18 TPM:2.76
2407 A_BomaMSG_c12603_g1_i1
403bp
FPKM:3.19 TPM:1.43
2408 A_BomaMSG_c12604_g1_i1
433bp
reverse_transcriptase,_partial_[Bombyx_mori]
FPKM:2.85 TPM:1.27
2409 A_BomaMSG_c12605_g1_i1
216bp
FPKM:3.93 TPM:1.76
2410 A_BomaMSG_c12607_g1_i1
288bp
probable_ubiquitin_carboxyl-terminal_hydrolase_FAF-X_isoform_X2_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0001764 P neuron migration
GO:0004197 F cysteine-type endopeptidase activity
GO:0004843 F thiol-dependent deubiquitinase
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006508 P proteolysis
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0007049 P cell cycle
GO:0007059 P chromosome segregation
GO:0007067 P mitotic cell cycle
GO:0007179 P transforming growth factor beta receptor signaling pathway
GO:0007292 P female gamete generation
GO:0008233 F peptidase activity
GO:0008234 F cysteine-type peptidase activity
GO:0016020 C membrane
GO:0016579 P protein deubiquitination
GO:0016787 F hydrolase activity
GO:0030426 C growth cone
GO:0030509 P BMP signaling pathway
GO:0036459 F thiol-dependent deubiquitinase
GO:0042995 C cell projection
GO:0044267 P cellular protein metabolic process
GO:0048675 P axon extension
GO:0051301 P cell division
GO:0070410 F co-SMAD binding
FPKM:2.91 TPM:1.30
2411 A_BomaMSG_c12608_g1_i1
434bp
FPKM:2.37 TPM:1.06
2412 A_BomaMSG_c1260_g1_i1
390bp
DNA_replication_ATP-dependent_helicase/nuclease_DNA2_[Bombyx_mori]
GO:0000076 P DNA replication checkpoint signaling
GO:0000166 F nucleotide binding
GO:0000729 P DNA double-strand break processing
GO:0003674 F molecular_function
GO:0003677 F DNA binding
GO:0003678 F DNA helicase activity
GO:0003824 F catalytic activity
GO:0004386 F helicase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0005524 F ATP binding
GO:0005575 C cellular_component
GO:0005634 C nucleus
GO:0005739 C mitochondrion
GO:0006260 P DNA replication
GO:0006281 P DNA repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0008150 P biological_process
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
GO:0017108 F 5'-flap endonuclease activity
GO:0032508 P DNA duplex unwinding
GO:0033567 P DNA replication, Okazaki fragment processing
GO:0043139 F 5'-3' DNA helicase activity
GO:0043142 F single-stranded DNA helicase activity
GO:0046872 F metal ion binding
GO:0051536 F iron-sulfur cluster binding
GO:0051539 F 4 iron, 4 sulfur cluster binding
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
FPKM:1.96 TPM:0.88
2413 A_BomaMSG_c12610_g1_i1
327bp
FPKM:1.90 TPM:0.85
2414 A_BomaMSG_c12613_g1_i1
205bp
FPKM:4.62 TPM:2.06
2415 A_BomaMSG_c12618_g1_i1
337bp
zonadhesin_[Bombyx_mori]
GO:0005576 C extracellular region
GO:0005796 C Golgi lumen
GO:0016266 P O-glycan processing
GO:0070062 C extracellular exosome
FPKM:220.93 TPM:98.73
2416 A_BomaMSG_c12618_g1_i2
225bp
zonadhesin_isoform_X2_[Bombyx_mori]
GO:0005576 C extracellular region
GO:0005796 C Golgi lumen
GO:0016266 P O-glycan processing
GO:0070062 C extracellular exosome
FPKM:565.94 TPM:252.90
2417 A_BomaMSG_c12619_g1_i1
357bp
sorting_nexin-13_isoform_X2_[Bombyx_mori]
GO:0005768 C endosome
GO:0005769 C early endosome
GO:0006810 P transport
GO:0006886 P intracellular protein transport
GO:0008289 F lipid binding
GO:0009968 P negative regulation of signal transduction
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0031901 C early endosome membrane
GO:0032266 F phosphatidylinositol-3-phosphate binding
GO:0035091 F phosphatidylinositol binding
GO:0043547 P positive regulation of GTPase activity
FPKM:2.60 TPM:1.16
2418 A_BomaMSG_c12620_g1_i1
214bp
FPKM:7.08 TPM:3.16
2419 A_BomaMSG_c12621_g1_i1
746bp
small_subunit_processome_component_20_homolog_[Bombyx_mori]
GO:0000447 P endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000462 P maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000472 P endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000480 P endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006364 P rRNA processing
GO:0008285 P negative regulation of cell population proliferation
GO:0030686 C 90S preribosome
GO:0030688 C preribosome, small subunit precursor
GO:0032040 C small-subunit processome
GO:0044822 F RNA binding
FPKM:3.16 TPM:1.41
2420 A_BomaMSG_c12622_g1_i1
367bp
FPKM:3.93 TPM:1.76
2421 A_BomaMSG_c12622_g1_i2
658bp
FPKM:2.56 TPM:1.14
2422 A_BomaMSG_c12623_g1_i1
828bp
seroin_1_precursor_[Bombyx_mori]
FPKM:8164.61 TPM:3648.55
2423 A_BomaMSG_c12624_g1_i1
307bp
FPKM:3.42 TPM:1.53
2424 A_BomaMSG_c12625_g1_i1
2404bp
venom_dipeptidyl_peptidase_4-like_[Bombyx_mori]
GO:0004177 F aminopeptidase activity
GO:0005576 C extracellular region
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0008236 F serine-type peptidase activity
GO:0016787 F hydrolase activity
FPKM:59.24 TPM:26.47
2425 A_BomaMSG_c12626_g1_i1
1512bp
monocarboxylate_transporter_12_[Bombyx_mori]
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0006810 P transport
GO:0008028 F monocarboxylic acid transmembrane transporter activity
GO:0015129 F lactate transmembrane transporter activity
GO:0015293 F symporter activity
GO:0015718 P monocarboxylic acid transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0035879 P plasma membrane lactate transport
GO:0055085 P transmembrane transport
FPKM:3.61 TPM:1.61
2426 A_BomaMSG_c12627_g1_i1
531bp
FPKM:3.18 TPM:1.42
2427 A_BomaMSG_c12628_g1_i1
296bp
FPKM:1.84 TPM:0.82
2428 A_BomaMSG_c1262_g1_i1
244bp
FPKM:3.53 TPM:1.58
2429 A_BomaMSG_c12630_g1_i1
446bp
LOW_QUALITY_PROTEIN:_partitioning_defective_3_homolog_[Bombyx_mori]
FPKM:2.95 TPM:1.32
2430 A_BomaMSG_c12630_g1_i2
428bp
LOW_QUALITY_PROTEIN:_partitioning_defective_3_homolog_[Bombyx_mori]
FPKM:1.70 TPM:0.76
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