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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
2431 A_BomaMSG_c12631_g1_i1
1445bp
GTP_binding_protein_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003674 F molecular_function
GO:0005524 F ATP binding
GO:0005525 F GTP binding
GO:0005575 C cellular_component
GO:0005737 C cytoplasm
GO:0008150 P biological_process
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
GO:0016887 F ATP hydrolysis activity
GO:0043022 F ribosome binding
GO:0043023 F ribosomal large subunit binding
GO:0046872 F metal ion binding
FPKM:34.26 TPM:15.31
2432 A_BomaMSG_c12632_g1_i1
901bp
FPKM:231.02 TPM:103.24
2433 A_BomaMSG_c12632_g2_i1
212bp
FPKM:172.53 TPM:77.10
2434 A_BomaMSG_c12633_g1_i1
918bp
facilitated_trehalose_transporter_Tret1_[Bombyx_mori]
GO:0005215 F transporter activity
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0008643 P carbohydrate transport
GO:0015574 F trehalose transmembrane transporter activity
GO:0015767 P lactose transport
GO:0015768 P maltose transport
GO:0015770 P sucrose transport
GO:0015771 P trehalose transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0022857 F transmembrane transporter activity
GO:0022891 F transmembrane transporter activity
GO:0055085 P transmembrane transport
FPKM:3.86 TPM:1.72
2435 A_BomaMSG_c12634_g1_i1
880bp
Transposon_Ty3-I_Gag-Pol_polyprotein,_partial_[Stegodyphus_mimosarum]
GO:0003676 F nucleic acid binding
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0015074 P DNA integration
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
FPKM:2.49 TPM:1.11
2436 A_BomaMSG_c12635_g1_i1
223bp
hypothetical_protein_TcasGA2_TC032775_[Tribolium_castaneum]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0003824 F catalytic activity
GO:0003887 F DNA-directed DNA polymerase activity
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0005575 C cellular_component
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006310 P DNA recombination
GO:0006508 P proteolysis
GO:0008152 P metabolic process
GO:0008233 F peptidase activity
GO:0015074 P DNA integration
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
GO:0071897 P DNA biosynthetic process
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
FPKM:5.38 TPM:2.40
2437 A_BomaMSG_c12636_g1_i1
650bp
protein_SERAC1_[Bombyx_mori]
GO:0005739 C mitochondrion
GO:0005783 C endoplasmic reticulum
GO:0006629 P lipid metabolic process
GO:0008654 P phospholipid biosynthetic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
FPKM:3.50 TPM:1.56
2438 A_BomaMSG_c12637_g1_i1
357bp
FPKM:11.36 TPM:5.08
2439 A_BomaMSG_c1263_g1_i1
313bp
FPKM:0.82 TPM:0.37
2440 A_BomaMSG_c12640_g1_i1
554bp
FPKM:2.00 TPM:0.89
2441 A_BomaMSG_c12641_g1_i1
924bp
protein_YIPF5_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0003674 F molecular_function
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0005794 C Golgi apparatus
GO:0006810 P transport
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016192 P vesicle-mediated transport
FPKM:33.23 TPM:14.85
2442 A_BomaMSG_c12642_g1_i1
497bp
reverse_transcriptase,_partial_[Bombyx_mori]
FPKM:3.30 TPM:1.47
2443 A_BomaMSG_c12642_g2_i1
489bp
FPKM:2.18 TPM:0.98
2444 A_BomaMSG_c12644_g1_i1
229bp
farnesyl_diphosphate_synthase_3_isoform_X1_[Bombyx_mori]
GO:0004161 F dimethylallyltranstransferase activity
GO:0004337 F geranyltranstransferase activity
GO:0005737 C cytoplasm
GO:0005783 C endoplasmic reticulum
GO:0006629 P lipid metabolic process
GO:0006696 P ergosterol biosynthetic process
GO:0008299 P isoprenoid biosynthetic process
GO:0016740 F transferase activity
GO:0033384 P geranyl diphosphate biosynthetic process
GO:0045337 P farnesyl diphosphate biosynthetic process
GO:0046872 F metal ion binding
FPKM:2.50 TPM:1.12
2445 A_BomaMSG_c12645_g1_i1
225bp
polyprotein,_partial_[Bombyx_mori]
FPKM:0.00 TPM:0.00
2446 A_BomaMSG_c1264_g1_i1
247bp
FPKM:4.80 TPM:2.15
2447 A_BomaMSG_c12654_g1_i1
270bp
FPKM:3.35 TPM:1.49
2448 A_BomaMSG_c12658_g1_i1
248bp
FPKM:2.04 TPM:0.91
2449 A_BomaMSG_c12659_g1_i1
336bp
ribosomal_protein_S3,_partial_[Ostrinia_furnacalis]
GO:0003723 F RNA binding
GO:0003735 F structural constituent of ribosome
GO:0005840 C ribosome
GO:0006412 P translation
GO:0015935 C small ribosomal subunit
GO:0030529 C ribonucleoprotein complex
FPKM:4.70 TPM:2.10
2450 A_BomaMSG_c1265_g1_i1
334bp
FPKM:1.83 TPM:0.82
2451 A_BomaMSG_c12660_g1_i1
253bp
FPKM:1.44 TPM:0.64
2452 A_BomaMSG_c12660_g1_i2
238bp
FPKM:5.10 TPM:2.28
2453 A_BomaMSG_c12663_g1_i1
438bp
LOW_QUALITY_PROTEIN:_uncharacterized_protein_KIAA1109_[Bombyx_mori]
GO:0001558 P regulation of cell growth
GO:0003674 F molecular_function
GO:0005634 C nucleus
GO:0006629 P lipid metabolic process
GO:0007283 P spermatogenesis
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0019915 P lipid storage
GO:0045444 P fat cell differentiation
GO:0051647 P nucleus localization
GO:0060612 P adipose tissue development
FPKM:2.10 TPM:0.94
2454 A_BomaMSG_c12665_g1_i1
385bp
probable_cation-transporting_ATPase_13A3_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005524 F ATP binding
GO:0005887 C integral component of plasma membrane
GO:0006812 P cation transport
GO:0006874 P cellular calcium ion homeostasis
GO:0008152 P metabolic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016787 F hydrolase activity
GO:0016887 F ATP hydrolysis activity
GO:0019829 F ATPase-coupled cation transmembrane transporter activity
GO:0043231 C intracellular membrane-bounded organelle
GO:0046872 F metal ion binding
GO:0098655 P cation transmembrane transport
FPKM:2.29 TPM:1.02
2455 A_BomaMSG_c12669_g1_i1
349bp
rho_GTPase-activating_protein_26_[Bombyx_mori]
GO:0005096 F GTPase activator activity
GO:0005515 F protein binding
GO:0005543 F phospholipid binding
GO:0005575 C cellular_component
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005856 C cytoskeleton
GO:0005925 C focal adhesion
GO:0007165 P signal transduction
GO:0007399 P nervous system development
GO:0030036 P actin cytoskeleton organization
GO:0030054 C cell junction
GO:0043547 P positive regulation of GTPase activity
GO:0051056 P regulation of small GTPase mediated signal transduction
FPKM:2.36 TPM:1.06
2456 A_BomaMSG_c12669_g2_i1
284bp
rho_GTPase-activating_protein_26_[Bombyx_mori]
GO:0005096 F GTPase activator activity
GO:0007165 P signal transduction
GO:0043547 P positive regulation of GTPase activity
FPKM:8.00 TPM:3.58
2457 A_BomaMSG_c1266_g1_i1
210bp
reverse_transcriptase_[Bombyx_mori]
FPKM:1.07 TPM:0.48
2458 A_BomaMSG_c12671_g1_i1
262bp
FPKM:1.19 TPM:0.53
2459 A_BomaMSG_c12675_g1_i1
216bp
FPKM:4.92 TPM:2.20
2460 A_BomaMSG_c12678_g1_i1
213bp
FPKM:1.03 TPM:0.46
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