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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
2371 A_BomaMSG_c12573_g1_i1
217bp
FPKM:2.91 TPM:1.30
2372 A_BomaMSG_c12573_g1_i2
300bp
FPKM:4.92 TPM:2.20
2373 A_BomaMSG_c12574_g1_i1
265bp
FPKM:1.74 TPM:0.78
2374 A_BomaMSG_c12574_g1_i2
251bp
FPKM:0.00 TPM:0.00
2375 A_BomaMSG_c12575_g1_i1
352bp
titin_homolog_[Bombyx_mori]
FPKM:1.33 TPM:0.59
2376 A_BomaMSG_c12577_g1_i1
634bp
PHD_finger_protein_rhinoceros_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005634 C nucleus
GO:0007275 P multicellular organism development
GO:0008270 F zinc ion binding
GO:0042051 P compound eye photoreceptor development
GO:0042059 P negative regulation of epidermal growth factor receptor signaling pathway
GO:0046872 F metal ion binding
FPKM:3.20 TPM:1.43
2377 A_BomaMSG_c12578_g1_i1
263bp
flavin-dependent_monooxygenase_FMO2_isoform_X1_[Bombyx_mori]
GO:0004497 F monooxygenase activity
GO:0004499 F N,N-dimethylaniline monooxygenase activity
GO:0005576 C extracellular region
GO:0009820 P alkaloid metabolic process
GO:0016491 F oxidoreductase activity
GO:0033784 F senecionine N-oxygenase activity
GO:0050660 F flavin adenine dinucleotide binding
GO:0050661 F NADP binding
GO:0051289 P protein homotetramerization
GO:0055114 P obsolete oxidation-reduction process
FPKM:2.37 TPM:1.06
2378 A_BomaMSG_c12579_g1_i1
314bp
DNA_repair_protein_RAD51_homolog_3_[Bombyx_mori]
FPKM:2.05 TPM:0.91
2379 A_BomaMSG_c1257_g1_i1
374bp
transcription_elongation_regulator_1,_partial_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0001103 F RNA polymerase II-specific DNA-binding transcription factor binding
GO:0001106 F transcription corepressor activity
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0015629 C actin cytoskeleton
GO:0044822 F RNA binding
GO:0070064 F proline-rich region binding
FPKM:3.30 TPM:1.48
2380 A_BomaMSG_c12580_g1_i1
255bp
glycosyltransferase-like_protein_gnt13_isoform_X46_[Helicoverpa_armigera]
FPKM:3.91 TPM:1.75
2381 A_BomaMSG_c12580_g1_i2
219bp
FPKM:1.74 TPM:0.78
2382 A_BomaMSG_c12580_g1_i3
288bp
glycosyltransferase-like_protein_gnt13_isoform_X46_[Helicoverpa_armigera]
FPKM:1.46 TPM:0.65
2383 A_BomaMSG_c12581_g1_i1
381bp
FPKM:16.01 TPM:7.15
2384 A_BomaMSG_c12584_g1_i1
284bp
FPKM:6.00 TPM:2.68
2385 A_BomaMSG_c12585_g1_i1
219bp
uncharacterized_protein_LOC101742145_isoform_X1_[Bombyx_mori]
FPKM:4.72 TPM:2.11
2386 A_BomaMSG_c12587_g1_i1
202bp
endonuclease-reverse_transcriptase_[Bombyx_mori]
FPKM:1.44 TPM:0.64
2387 A_BomaMSG_c12587_g1_i2
217bp
endonuclease-reverse_transcriptase_[Bombyx_mori]
FPKM:3.33 TPM:1.49
2388 A_BomaMSG_c12587_g1_i3
203bp
uncharacterized_protein_LOC101741398_[Bombyx_mori]
FPKM:2.83 TPM:1.26
2389 A_BomaMSG_c12589_g1_i1
235bp
G-protein_coupled_receptor_143-like_[Bombyx_mori]
GO:0004871 F obsolete signal transducer activity
GO:0004930 F G protein-coupled receptor activity
GO:0005764 C lysosome
GO:0005765 C lysosomal membrane
GO:0005794 C Golgi apparatus
GO:0005886 C plasma membrane
GO:0007165 P signal transduction
GO:0007186 P G protein-coupled receptor signaling pathway
GO:0007218 P neuropeptide signaling pathway
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016324 C apical plasma membrane
GO:0032400 P melanosome localization
GO:0032402 P melanosome transport
GO:0032438 P melanosome organization
GO:0033162 C melanosome membrane
GO:0035240 F dopamine binding
GO:0035584 P calcium-mediated signaling using intracellular calcium source
GO:0035643 F L-DOPA receptor activity
GO:0042470 C melanosome
GO:0048015 P phosphatidylinositol-mediated signaling
GO:0050848 P regulation of calcium-mediated signaling
GO:0072544 F L-DOPA binding
GO:0072545 F tyrosine binding
GO:1902908 P regulation of melanosome transport
GO:1903056 P regulation of melanosome organization
FPKM:0.00 TPM:0.00
2390 A_BomaMSG_c12589_g2_i1
390bp
G-protein_coupled_receptor_143-like_[Bombyx_mori]
FPKM:6.16 TPM:2.75
2391 A_BomaMSG_c1258_g1_i1
520bp
FPKM:1.46 TPM:0.65
2392 A_BomaMSG_c12591_g1_i1
493bp
prolyl_4-hydroxylase_alpha_subunit_precursor_[Bombyx_mori]
GO:0004656 F procollagen-proline 4-dioxygenase activity
GO:0005506 F iron ion binding
GO:0005783 C endoplasmic reticulum
GO:0005788 C endoplasmic reticulum lumen
GO:0016491 F oxidoreductase activity
GO:0016702 F oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
GO:0016705 F oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0019511 P peptidyl-proline hydroxylation
GO:0031418 F L-ascorbic acid binding
GO:0046872 F metal ion binding
GO:0051213 F dioxygenase activity
GO:0055114 P obsolete oxidation-reduction process
FPKM:2.74 TPM:1.22
2393 A_BomaMSG_c12591_g1_i2
333bp
prolyl_4-hydroxylase_alpha_subunit_precursor_[Bombyx_mori]
GO:0004656 F procollagen-proline 4-dioxygenase activity
GO:0005506 F iron ion binding
GO:0005783 C endoplasmic reticulum
GO:0005788 C endoplasmic reticulum lumen
GO:0016491 F oxidoreductase activity
GO:0016702 F oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
GO:0016705 F oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0019511 P peptidyl-proline hydroxylation
GO:0031418 F L-ascorbic acid binding
GO:0046872 F metal ion binding
GO:0051213 F dioxygenase activity
GO:0055114 P obsolete oxidation-reduction process
FPKM:1.86 TPM:0.83
2394 A_BomaMSG_c12591_g1_i3
407bp
prolyl_4-hydroxylase_alpha_subunit_precursor_[Bombyx_mori]
GO:0004656 F procollagen-proline 4-dioxygenase activity
GO:0005506 F iron ion binding
GO:0005783 C endoplasmic reticulum
GO:0005788 C endoplasmic reticulum lumen
GO:0016491 F oxidoreductase activity
GO:0016702 F oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
GO:0016705 F oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0019511 P peptidyl-proline hydroxylation
GO:0031418 F L-ascorbic acid binding
GO:0046872 F metal ion binding
GO:0051213 F dioxygenase activity
GO:0055114 P obsolete oxidation-reduction process
FPKM:0.00 TPM:0.00
2395 A_BomaMSG_c12592_g1_i1
278bp
FPKM:4.71 TPM:2.10
2396 A_BomaMSG_c12593_g1_i1
524bp
FPKM:2.52 TPM:1.13
2397 A_BomaMSG_c12594_g1_i1
283bp
FPKM:9.07 TPM:4.05
2398 A_BomaMSG_c12595_g1_i1
321bp
FPKM:6.68 TPM:2.98
2399 A_BomaMSG_c12597_g1_i1
410bp
FPKM:4.91 TPM:2.20
2400 A_BomaMSG_c12598_g1_i1
298bp
zinc_finger_protein_569_isoform_X2_[Bombyx_mori]
FPKM:1.36 TPM:0.61
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