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Search Assembled RNA-Seq

No.

Name
Length

Chromosome No./Scaffold Id
Scaffold Length

BLAST (vs nr)

Gene ontology

Transcript
Level

2341

A_BomaMSG_c12541_g1_i1

247bp

polynucleotide_5'-hydroxyl-kinase_NOL9_[Bombyx_mori]

FPKM:8.91 TPM:3.98

2342

A_BomaMSG_c12542_g1_i1

702bp

helicase_SEN1_isoform_X2_[Bombyx_mori]

GO:0000166	F	nucleotide binding
GO:0004386	F	helicase activity
GO:0005515	F	protein binding
GO:0005524	F	ATP binding
GO:0005634	C	nucleus
GO:0005657	C	replication fork
GO:0005737	C	cytoplasm
GO:0006353	P	DNA-templated transcription, termination
GO:0006364	P	rRNA processing
GO:0006369	P	termination of RNA polymerase II transcription
GO:0006378	P	mRNA polyadenylation
GO:0006397	P	mRNA processing
GO:0008033	P	tRNA processing
GO:0008094	F	ATP-dependent activity, acting on DNA
GO:0008186	F	ATP-dependent activity, acting on RNA
GO:0016180	P	snRNA processing
GO:0016787	F	hydrolase activity
GO:0017116	F	single-stranded DNA helicase activity
GO:0019904	F	protein domain specific binding
GO:0031124	P	mRNA 3'-end processing
GO:0031126	P	sno(s)RNA 3'-end processing
GO:0032508	P	DNA duplex unwinding
GO:0032575	F	5'-3' RNA helicase activity
GO:0035649	C	Nrd1 complex
GO:0045005	P	DNA-dependent DNA replication maintenance of fidelity
GO:1990248	P	regulation of transcription from RNA polymerase II promoter in response to DNA damage

FPKM:1.83 TPM:0.82

2343

A_BomaMSG_c12543_g1_i1

435bp

FPKM:2.36 TPM:1.05

2344

A_BomaMSG_c12544_g1_i1

526bp

condensin-2_complex_subunit_D3_isoform_X2_[Bombyx_mori]

FPKM:3.40 TPM:1.52

2345

A_BomaMSG_c12545_g1_i1

497bp

PREDICTED:_uncharacterized_protein_LOC106718363_[Papilio_machaon]

FPKM:1.36 TPM:0.61

2346

A_BomaMSG_c12549_g1_i1

259bp

FPKM:3.68 TPM:1.64

2347

A_BomaMSG_c12551_g1_i1

555bp

minos_transposase_[Drosophila_hydei]

FPKM:1.99 TPM:0.89

2348

A_BomaMSG_c12553_g1_i1

268bp

vacuolar_protein_sorting-associated_protein_13C_[Bombyx_mori]

FPKM:5.10 TPM:2.28

2349

A_BomaMSG_c12554_g1_i1

341bp

ras-like_protein_2_[Bombyx_mori]

GO:0000166	F	nucleotide binding
GO:0003924	F	GTPase activity
GO:0005515	F	protein binding
GO:0005525	F	GTP binding
GO:0005575	C	cellular_component
GO:0005622	C	intracellular anatomical structure
GO:0005886	C	plasma membrane
GO:0006886	P	intracellular protein transport
GO:0006913	P	nucleocytoplasmic transport
GO:0007165	P	signal transduction
GO:0007264	P	small GTPase mediated signal transduction
GO:0007265	P	Ras protein signal transduction
GO:0008152	P	metabolic process
GO:0015031	P	protein transport
GO:0016020	C	membrane
GO:0019003	F	GDP binding

FPKM:4.57 TPM:2.04

2350

A_BomaMSG_c12555_g1_i1

288bp

FPKM:3.40 TPM:1.52

2351

A_BomaMSG_c12556_g1_i1

244bp

FPKM:5.65 TPM:2.53

2352

A_BomaMSG_c12558_g1_i1

639bp

mitochondrial_ribonuclease_P_protein_1_homolog_isoform_X1_[Bombyx_mori]

GO:0003674	F	molecular_function
GO:0005575	C	cellular_component
GO:0005739	C	mitochondrion
GO:0008033	P	tRNA processing
GO:0008150	P	biological_process
GO:0008168	F	methyltransferase activity
GO:0016740	F	transferase activity
GO:0032259	P	methylation

FPKM:5.64 TPM:2.52

2353

A_BomaMSG_c12559_g1_i1

386bp

FPKM:11.68 TPM:5.22

2354

A_BomaMSG_c1255_g1_i1

238bp

serine/threonine-protein_kinase_SMG1_[Bombyx_mori]

GO:0000166	F	nucleotide binding
GO:0000184	P	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0004672	F	protein kinase activity
GO:0004674	F	protein serine/threonine kinase activity
GO:0005524	F	ATP binding
GO:0005634	C	nucleus
GO:0005737	C	cytoplasm
GO:0005829	C	cytosol
GO:0006281	P	DNA repair
GO:0006950	P	response to stress
GO:0007274	P	neuromuscular synaptic transmission
GO:0016246	P	RNA interference
GO:0016301	F	kinase activity
GO:0016310	P	phosphorylation
GO:0016740	F	transferase activity
GO:0016773	F	phosphotransferase activity, alcohol group as acceptor
GO:0018105	P	peptidyl-serine phosphorylation
GO:0035195	P	gene silencing by miRNA
GO:0046777	P	protein autophosphorylation
GO:0046872	F	metal ion binding
GO:0048489	P	synaptic vesicle transport
GO:0050808	P	synapse organization

FPKM:6.77 TPM:3.03

2355

A_BomaMSG_c12560_g1_i1

580bp

spermatogenesis-associated_protein_6_isoform_X3_[Bombyx_mori]

FPKM:1.88 TPM:0.84

2356

A_BomaMSG_c12561_g1_i1

314bp

FPKM:2.05 TPM:0.91

2357

A_BomaMSG_c12562_g1_i1

241bp

WD_repeat_and_FYVE_domain-containing_protein_3_isoform_X4_[Bombyx_mori]

GO:0003831	F	beta-N-acetylglucosaminylglycopeptide beta-1,4-galactosyltransferase activity
GO:0005543	F	phospholipid binding
GO:0005545	F	1-phosphatidylinositol binding
GO:0005634	C	nucleus
GO:0005635	C	nuclear envelope
GO:0005737	C	cytoplasm
GO:0005776	C	autophagosome
GO:0006914	P	autophagy
GO:0012505	C	endomembrane system
GO:0016020	C	membrane
GO:0016234	C	inclusion body
GO:0016239	P	positive regulation of macroautophagy
GO:0016605	C	PML body
GO:0019898	C	extrinsic component of membrane
GO:0031965	C	nuclear membrane
GO:0034274	C	Atg12-Atg5-Atg16 complex
GO:0035973	P	aggrephagy
GO:0046872	F	metal ion binding
GO:0097635	C	extrinsic component of autophagosome membrane

FPKM:2.19 TPM:0.98

2358

A_BomaMSG_c12562_g2_i1

1076bp

WD_repeat_and_FYVE_domain-containing_protein_3_isoform_X2_[Bombyx_mori]

GO:0003831	F	beta-N-acetylglucosaminylglycopeptide beta-1,4-galactosyltransferase activity
GO:0005543	F	phospholipid binding
GO:0005545	F	1-phosphatidylinositol binding
GO:0005634	C	nucleus
GO:0005635	C	nuclear envelope
GO:0005737	C	cytoplasm
GO:0005776	C	autophagosome
GO:0006914	P	autophagy
GO:0012505	C	endomembrane system
GO:0016020	C	membrane
GO:0016234	C	inclusion body
GO:0016239	P	positive regulation of macroautophagy
GO:0016605	C	PML body
GO:0019898	C	extrinsic component of membrane
GO:0031965	C	nuclear membrane
GO:0034274	C	Atg12-Atg5-Atg16 complex
GO:0035973	P	aggrephagy
GO:0046872	F	metal ion binding
GO:0097635	C	extrinsic component of autophagosome membrane