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Search Assembled RNA-Seq

No.

Name
Length

Chromosome No./Scaffold Id
Scaffold Length

BLAST (vs nr)

Gene ontology

Transcript
Level

2191

A_BomaMSG_c12357_g1_i1

209bp

FPKM:5.63 TPM:2.52

2192

A_BomaMSG_c12357_g1_i2

892bp

FPKM:3.25 TPM:1.45

2193

A_BomaMSG_c12358_g1_i1

249bp

FPKM:4.71 TPM:2.10

2194

A_BomaMSG_c12359_g1_i1

517bp

TATA_element_modulatory_factor_isoform_X1_[Bombyx_mori]

FPKM:8.62 TPM:3.85

2195

A_BomaMSG_c12359_g1_i2

331bp

TATA_element_modulatory_factor_isoform_X1_[Bombyx_mori]

FPKM:0.00 TPM:0.00

2196

A_BomaMSG_c1235_g1_i1

202bp

FPKM:4.84 TPM:2.16

2197

A_BomaMSG_c12360_g1_i1

249bp

PREDICTED:_RNA-directed_DNA_polymerase_from_mobile_element_jockey-like_isoform_X2_[Papilio_machaon]

FPKM:6.72 TPM:3.00

2198

A_BomaMSG_c12361_g1_i1

415bp

protein_cramped_[Bombyx_mori]

GO:0003677	F	DNA binding
GO:0005634	C	nucleus

FPKM:0.00 TPM:0.00

2199

A_BomaMSG_c12361_g1_i2

465bp

protein_cramped_[Bombyx_mori]

GO:0003674	F	molecular_function
GO:0003677	F	DNA binding
GO:0005575	C	cellular_component
GO:0005634	C	nucleus
GO:0008150	P	biological_process

FPKM:2.99 TPM:1.34

2200

A_BomaMSG_c12363_g1_i1

262bp

FPKM:2.39 TPM:1.07

2201

A_BomaMSG_c12365_g1_i1

263bp

FPKM:6.50 TPM:2.91

2202

A_BomaMSG_c12367_g1_i1

319bp

FPKM:5.17 TPM:2.31

2203

A_BomaMSG_c12368_g1_i1

204bp

FPKM:3.52 TPM:1.57

2204

A_BomaMSG_c12369_g1_i1

302bp

Ig-like_and_fibronectin_type-III_domain-containing_protein_1_isoform_X2_[Bombyx_mori]

GO:0004721	F	phosphoprotein phosphatase activity
GO:0004725	F	protein tyrosine phosphatase activity
GO:0005001	F	transmembrane receptor protein tyrosine phosphatase activity
GO:0005515	F	protein binding
GO:0005886	C	plasma membrane
GO:0005887	C	integral component of plasma membrane
GO:0006470	P	protein dephosphorylation
GO:0007155	P	cell adhesion
GO:0007268	P	chemical synaptic transmission
GO:0016020	C	membrane
GO:0016021	C	integral component of membrane
GO:0016311	P	dephosphorylation
GO:0016787	F	hydrolase activity
GO:0016791	F	phosphatase activity
GO:0021510	P	spinal cord development
GO:0021549	P	cerebellum development
GO:0021766	P	hippocampus development
GO:0021987	P	cerebral cortex development
GO:0022038	P	corpus callosum development
GO:0035335	P	peptidyl-tyrosine dephosphorylation
GO:0070062	C	extracellular exosome
GO:0090557	P	establishment of endothelial intestinal barrier

FPKM:2.21 TPM:0.99

2205

A_BomaMSG_c1236_g1_i1

298bp

FPKM:5.44 TPM:2.43

2206

A_BomaMSG_c12370_g1_i1

288bp

FPKM:2.43 TPM:1.09

2207

A_BomaMSG_c12371_g1_i1

2057bp

carboxylesterase_CarE-7_[Bombyx_mandarina]

GO:0008152	P	metabolic process
GO:0016787	F	hydrolase activity
GO:0052689	F	carboxylic ester hydrolase activity

FPKM:1254.23 TPM:560.48

2208

A_BomaMSG_c12373_g1_i1

391bp

FPKM:1.40 TPM:0.62

2209

A_BomaMSG_c12374_g1_i1

310bp

calcineurin-binding_protein_cabin-1_[Bombyx_mori]

GO:0004864	F	protein phosphatase inhibitor activity
GO:0005515	F	protein binding
GO:0005575	C	cellular_component
GO:0005634	C	nucleus
GO:0005737	C	cytoplasm
GO:0006336	P	DNA replication-independent chromatin assembly
GO:0014823	P	response to activity
GO:0016568	P	chromatin organization
GO:0019904	F	protein domain specific binding
GO:0030346	F	protein phosphatase 2B binding
GO:0031491	F	nucleosome binding
GO:0043086	P	negative regulation of catalytic activity
GO:0060548	P	negative regulation of cell death

FPKM:2.10 TPM:0.94

2210

A_BomaMSG_c12374_g2_i1

494bp

calcineurin-binding_protein_cabin-1_[Bombyx_mori]

GO:0004864	F	protein phosphatase inhibitor activity
GO:0005634	C	nucleus
GO:0005654	C	nucleoplasm
GO:0005737	C	cytoplasm
GO:0006336	P	DNA replication-independent chromatin assembly
GO:0007166	P	cell surface receptor signaling pathway
GO:0014823	P	response to activity
GO:0016235	C	aggresome
GO:0016568	P	chromatin organization
GO:0019904	F	protein domain specific binding
GO:0030346	F	protein phosphatase 2B binding
GO:0031491	F	nucleosome binding
GO:0043086	P	negative regulation of catalytic activity
GO:0060548	P	negative regulation of cell death

FPKM:1.37 TPM:0.61

2211

A_BomaMSG_c12375_g1_i1

201bp

PREDICTED:_sushi,_von_Willebrand_factor_type_A,_EGF_and_pentraxin_domain-containing_protein_1_[Amyelois_transitella]

GO:0003682	F	chromatin binding
GO:0005509	F	calcium ion binding
GO:0005576	C	extracellular region
GO:0005737	C	cytoplasm
GO:0007155	P	cell adhesion
GO:0016020	C	membrane

FPKM:8.61 TPM:3.85

2212

A_BomaMSG_c12375_g2_i1

447bp

uncharacterized_protein_LOC101740358_isoform_X2_[Bombyx_mori]

GO:0004872	F	signaling receptor activity
GO:0005509	F	calcium ion binding
GO:0005764	C	lysosome
GO:0005765	C	lysosomal membrane
GO:0005768	C	endosome
GO:0006629	P	lipid metabolic process
GO:0006810	P	transport
GO:0006898	P	receptor-mediated endocytosis
GO:0008202	P	steroid metabolic process
GO:0008203	P	cholesterol metabolic process
GO:0010008	C	endosome membrane
GO:0015031	P	protein transport
GO:0016020	C	membrane
GO:0016324	C	apical plasma membrane
GO:0031419	F	cobalamin binding
GO:0046872	F	metal ion binding

FPKM:2.94 TPM:1.32

2213

A_BomaMSG_c12377_g1_i1

1209bp

toll-interacting_protein_[Bombyx_mori]

GO:0002376	P	immune system process
GO:0004871	F	obsolete signal transducer activity
GO:0005150	F	interleukin-1, type I receptor binding
GO:0005515	F	protein binding
GO:0005737	C	cytoplasm
GO:0005829	C	cytosol
GO:0006914	P	autophagy
GO:0006954	P	inflammatory response
GO:0007165	P	signal transduction
GO:0007267	P	cell-cell signaling
GO:0016310	P	phosphorylation
GO:0016604	C	nuclear body
GO:0019900	F	kinase binding
GO:0030855	P	epithelial cell differentiation
GO:0031624	F	ubiquitin conjugating enzyme binding
GO:0031625	F	ubiquitin protein ligase binding
GO:0032183	F	SUMO binding
GO:0033235	P	positive regulation of protein sumoylation
GO:0035325	F	Toll-like receptor binding
GO:0035556	P	intracellular signal transduction
GO:0036010	P	protein localization to endosome
GO:0045087	P	innate immune response
GO:0045092	C	interleukin-18 receptor complex
GO:0045321	P	leukocyte activation
GO:0045323	C	interleukin-1 receptor complex
GO:0048471	C	perinuclear region of cytoplasm
GO:0070062	C	extracellular exosome