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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
2131 A_BomaMSG_c12298_g1_i1
457bp
FPKM:2.19 TPM:0.98
2132 A_BomaMSG_c12301_g1_i1
381bp
transmembrane_protein_41_homolog_[Bombyx_mori]
FPKM:9.31 TPM:4.16
2133 A_BomaMSG_c12302_g1_i1
651bp
FPKM:4.03 TPM:1.80
2134 A_BomaMSG_c12303_g1_i1
366bp
FPKM:2.49 TPM:1.11
2135 A_BomaMSG_c12303_g2_i1
417bp
FPKM:1.01 TPM:0.45
2136 A_BomaMSG_c12304_g1_i1
260bp
FPKM:3.04 TPM:1.36
2137 A_BomaMSG_c12305_g1_i1
334bp
FPKM:6.21 TPM:2.77
2138 A_BomaMSG_c12306_g1_i1
281bp
FPKM:1.02 TPM:0.46
2139 A_BomaMSG_c12307_g1_i1
206bp
FPKM:2.27 TPM:1.02
2140 A_BomaMSG_c12308_g1_i1
253bp
uncharacterized_protein_LOC110383347_[Helicoverpa_armigera]
FPKM:8.41 TPM:3.76
2141 A_BomaMSG_c12309_g1_i1
618bp
FPKM:1.87 TPM:0.84
2142 A_BomaMSG_c12311_g1_i1
235bp
FPKM:2.33 TPM:1.04
2143 A_BomaMSG_c12314_g1_i1
647bp
solute_carrier_family_25_member_51_[Helicoverpa_armigera]
GO:0003735 F structural constituent of ribosome
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0006412 P translation
GO:0006810 P transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
FPKM:2.71 TPM:1.21
2144 A_BomaMSG_c12315_g1_i1
306bp
FPKM:12.48 TPM:5.58
2145 A_BomaMSG_c12316_g1_i1
358bp
NAD-dependent_protein_deacetylase_Sirt6_[Bombyx_mori]
GO:0004407 F histone deacetylase activity
GO:0005634 C nucleus
GO:0008340 P determination of adult lifespan
GO:0016575 P histone deacetylation
GO:0016787 F hydrolase activity
GO:0031937 P obsolete positive regulation of chromatin silencing
GO:0046872 F metal ion binding
GO:0070403 F NAD+ binding
FPKM:1.62 TPM:0.72
2146 A_BomaMSG_c12317_g1_i1
405bp
FPKM:3.43 TPM:1.53
2147 A_BomaMSG_c12318_g1_i1
956bp
uncharacterized_protein_LOC101742880_isoform_X1_[Bombyx_mori]
FPKM:2.55 TPM:1.14
2148 A_BomaMSG_c12319_g1_i1
541bp
pre-mRNA-splicing_factor_ISY1_homolog_[Helicoverpa_armigera]
GO:0000350 P generation of catalytic spliceosome for second transesterification step
GO:0000384 F first spliceosomal transesterification activity
GO:0000389 P mRNA 3'-splice site recognition
GO:0000974 C Prp19 complex
GO:0005634 C nucleus
GO:0005681 C spliceosomal complex
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0071012 C catalytic step 1 spliceosome
GO:0071013 C catalytic step 2 spliceosome
GO:0071014 C post-mRNA release spliceosomal complex
GO:0071020 C post-spliceosomal complex
FPKM:4.30 TPM:1.92
2149 A_BomaMSG_c1231_g1_i1
242bp
TRAS3_[Bombyx_mori]
FPKM:7.94 TPM:3.55
2150 A_BomaMSG_c12320_g1_i1
467bp
LOW_QUALITY_PROTEIN:_pre-mRNA-processing_factor_6_[Bombyx_mori]
GO:0000244 P spliceosomal tri-snRNP complex assembly
GO:0000398 P mRNA splicing, via spliceosome
GO:0003713 F transcription coactivator activity
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005682 C U5 snRNP
GO:0006396 P RNA processing
GO:0006397 P mRNA processing
GO:0006403 P RNA localization
GO:0008380 P RNA splicing
GO:0016020 C membrane
GO:0016607 C nuclear speck
GO:0043021 F ribonucleoprotein complex binding
GO:0044822 F RNA binding
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046540 C U4/U6 x U5 tri-snRNP complex
GO:0050681 F androgen receptor binding
GO:0071013 C catalytic step 2 spliceosome
FPKM:3.90 TPM:1.74
2151 A_BomaMSG_c12320_g1_i2
208bp
GA19898,_partial_[Drosophila_pseudoobscura]
GO:0000244 P spliceosomal tri-snRNP complex assembly
GO:0000398 P mRNA splicing, via spliceosome
GO:0003713 F transcription coactivator activity
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005682 C U5 snRNP
GO:0006396 P RNA processing
GO:0006397 P mRNA processing
GO:0006403 P RNA localization
GO:0008380 P RNA splicing
GO:0016020 C membrane
GO:0016607 C nuclear speck
GO:0043021 F ribonucleoprotein complex binding
GO:0044822 F RNA binding
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046540 C U4/U6 x U5 tri-snRNP complex
GO:0050681 F androgen receptor binding
GO:0071013 C catalytic step 2 spliceosome
FPKM:0.70 TPM:0.31
2152 A_BomaMSG_c12321_g1_i1
269bp
FPKM:6.18 TPM:2.76
2153 A_BomaMSG_c12322_g1_i1
362bp
FPKM:3.80 TPM:1.70
2154 A_BomaMSG_c12323_g1_i1
428bp
protein_downstream_neighbor_of_son_homolog_isoform_X2_[Bombyx_mori]
FPKM:2.66 TPM:1.19
2155 A_BomaMSG_c12325_g1_i1
289bp
FPKM:2.41 TPM:1.08
2156 A_BomaMSG_c12326_g1_i1
533bp
FPKM:1.58 TPM:0.71
2157 A_BomaMSG_c12327_g1_i1
296bp
protein_flightless-1_[Bombyx_mori]
GO:0003779 F actin binding
GO:0005509 F calcium ion binding
GO:0007275 P multicellular organism development
GO:0007527 P adult somatic muscle development
GO:0007629 P flight behavior
GO:0010004 P gastrulation involving germ band extension
GO:0030036 P actin cytoskeleton organization
GO:0030239 P myofibril assembly
GO:0051014 P actin filament severing
FPKM:0.00 TPM:0.00
2158 A_BomaMSG_c12327_g1_i2
618bp
protein_flightless-1_[Bombyx_mori]
GO:0003779 F actin binding
GO:0005509 F calcium ion binding
GO:0007275 P multicellular organism development
GO:0007527 P adult somatic muscle development
GO:0007629 P flight behavior
GO:0010004 P gastrulation involving germ band extension
GO:0030036 P actin cytoskeleton organization
GO:0030239 P myofibril assembly
GO:0051014 P actin filament severing
FPKM:2.88 TPM:1.29
2159 A_BomaMSG_c1232_g1_i1
427bp
guanine_nucleotide_exchange_factor_subunit_Rich_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0003674 F molecular_function
GO:0005794 C Golgi apparatus
GO:0005829 C cytosol
GO:0007411 P axon guidance
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016023 C cytoplasmic vesicle
GO:0017112 F guanyl-nucleotide exchange factor activity
GO:0017137 F small GTPase binding
GO:0032483 P regulation of Rab protein signal transduction
GO:0034066 C Ric1-Rgp1 guanyl-nucleotide exchange factor complex
GO:0035418 P protein localization to synapse
GO:0042147 P retrograde transport, endosome to Golgi
GO:0043234 C protein-containing complex
GO:0043547 P positive regulation of GTPase activity
GO:0045467 P R7 cell development
GO:0050808 P synapse organization
GO:0060078 P regulation of postsynaptic membrane potential
GO:1903363 P negative regulation of cellular protein catabolic process
FPKM:3.89 TPM:1.74
2160 A_BomaMSG_c12330_g1_i1
262bp
uncharacterized_protein_LOC101746806_[Bombyx_mori]
FPKM:3.53 TPM:1.58
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