SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomaMSG_c12320_g1_i1
Scaffold_id
NCBI non-redundant
(nr)		LOW_QUALITY_PROTEIN:_pre-mRNA-processing_factor_6_[Bombyx_mori]
Ontology
GO:0000244 P spliceosomal tri-snRNP complex assembly
GO:0000398 P mRNA splicing, via spliceosome
GO:0003713 F transcription coactivator activity
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005682 C U5 snRNP
GO:0006396 P RNA processing
GO:0006397 P mRNA processing
GO:0006403 P RNA localization
GO:0008380 P RNA splicing
GO:0016020 C membrane
GO:0016607 C nuclear speck
GO:0043021 F ribonucleoprotein complex binding
GO:0044822 F RNA binding
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046540 C U4/U6 x U5 tri-snRNP complex
GO:0050681 F androgen receptor binding
GO:0071013 C catalytic step 2 spliceosome
Transcript
Level		FPKM:3.90 TPM:1.74
ORF EntryO_BomaMSG3191_internal:A_BomaMSG_c12320_g1_i1
Sequence
(Nucleotide)
GCTCGACTAGAGGAAGTAACAGGTAAAGTACAGACAGCACGTAATCTCATAATGAAGGGA
TGTGAAGTCAATCCGAGCAGTGAAGAGCTATGGCTAGAGGCAGCTCGCTTGCAACCAATA
GACACGGCTCGTGCGGTCATAGCTCACGCTGCGAGGAACCTGCCTCACAGTGTCAGGATT
TGGGTCAAAGCGGCTGACTTAGAACAAGAGGCAAAGGCGAAACGTCGTGTGTTCCGCAAA
GCCTTAGAACACATTCCGAATTCGGTGCGTCTGTGGAAAGCGGCCGTCGAACTCGAGAAT
CCGGAAGACGCCCGGATCCTGCTGTCTCGCGCCGTGGAGTGCTGTCCCACCAGCGTCGAG
CTGTGGCTGGCTCTGGCGAGACTGGAGAGCTACGAGAACGCAAGGAAGGTGCTGAACAAG
GCAAGAGAGAACATACCCACCGACCGACAGATCTGGGTCACGGCGGC
(467 bp)

- SilkBase 1999-2023 -