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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
1891 A_BomaMSG_c12066_g1_i1
235bp
uncharacterized_protein_LOC105842659_[Bombyx_mori]
FPKM:2.33 TPM:1.04
1892 A_BomaMSG_c12067_g1_i1
645bp
clathrin_coat_assembly_protein_AP180_[Bombyx_mori]
FPKM:202.15 TPM:90.34
1893 A_BomaMSG_c12068_g1_i1
722bp
39S_ribosomal_protein_L16,_mitochondrial_isoform_X2_[Bombyx_mori]
GO:0003735 F structural constituent of ribosome
GO:0005739 C mitochondrion
GO:0005762 C mitochondrial large ribosomal subunit
GO:0005840 C ribosome
GO:0006412 P translation
GO:0019843 F rRNA binding
GO:0030529 C ribonucleoprotein complex
GO:0032543 P mitochondrial translation
FPKM:2.94 TPM:1.31
1894 A_BomaMSG_c12069_g1_i1
964bp
glycerol-3-phosphate_acyltransferase_1,_mitochondrial_isoform_X1_[Bombyx_mori]
FPKM:3.64 TPM:1.63
1895 A_BomaMSG_c1206_g1_i1
316bp
FPKM:4.04 TPM:1.81
1896 A_BomaMSG_c12070_g1_i1
365bp
FPKM:3.44 TPM:1.54
1897 A_BomaMSG_c12070_g2_i1
295bp
FPKM:0.46 TPM:0.21
1898 A_BomaMSG_c12071_g1_i1
765bp
uncharacterized_protein_LOC101743520_[Bombyx_mori]
FPKM:2.54 TPM:1.14
1899 A_BomaMSG_c12071_g1_i2
578bp
uncharacterized_protein_LOC101743520_[Bombyx_mori]
FPKM:0.44 TPM:0.20
1900 A_BomaMSG_c12073_g1_i1
352bp
hypothetical_protein_KGM_208267_[Danaus_plexippus_plexippus]
FPKM:1.33 TPM:0.59
1901 A_BomaMSG_c12074_g1_i1
725bp
PREDICTED:_uncharacterized_MFS-type_transporter_C09D4.1_isoform_X2_[Papilio_polytes]
GO:0006810 P transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0055085 P transmembrane transport
FPKM:5.15 TPM:2.30
1902 A_BomaMSG_c12075_g1_i1
260bp
FPKM:5.46 TPM:2.44
1903 A_BomaMSG_c12076_g1_i1
1503bp
double-stranded_RNA-binding_zinc_finger_protein_JAZ_[Bombyx_mori]
FPKM:4.60 TPM:2.06
1904 A_BomaMSG_c12076_g1_i2
1592bp
double-stranded_RNA-binding_zinc_finger_protein_JAZ_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003725 F double-stranded RNA binding
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0008150 P biological_process
GO:0008270 F zinc ion binding
GO:0046872 F metal ion binding
FPKM:31.87 TPM:14.24
1905 A_BomaMSG_c12077_g1_i1
338bp
40S_ribosomal_protein_S29_[Papilio_xuthus]
GO:0003735 F structural constituent of ribosome
GO:0005622 C intracellular anatomical structure
GO:0005840 C ribosome
GO:0006412 P translation
GO:0030529 C ribonucleoprotein complex
GO:0046872 F metal ion binding
FPKM:233.13 TPM:104.18
1906 A_BomaMSG_c12077_g1_i2
378bp
40S_ribosomal_protein_S29_[Papilio_xuthus]
GO:0003735 F structural constituent of ribosome
GO:0005622 C intracellular anatomical structure
GO:0005840 C ribosome
GO:0006412 P translation
GO:0030529 C ribonucleoprotein complex
GO:0046872 F metal ion binding
FPKM:382.92 TPM:171.12
1907 A_BomaMSG_c12078_g1_i1
736bp
nitric_oxide_synthase_isoform_X1_[Bombyx_mori]
GO:0004517 F nitric-oxide synthase activity
GO:0005506 F iron ion binding
GO:0005516 F calmodulin binding
GO:0006809 P nitric oxide biosynthetic process
GO:0010181 F FMN binding
GO:0016491 F oxidoreductase activity
GO:0020037 F heme binding
GO:0046872 F metal ion binding
GO:0050660 F flavin adenine dinucleotide binding
GO:0050661 F NADP binding
GO:0055114 P obsolete oxidation-reduction process
FPKM:1.38 TPM:0.62
1908 A_BomaMSG_c12079_g1_i1
658bp
Hermansky-Pudlak_syndrome_5_[Bombyx_mori]
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006996 P organelle organization
GO:0007596 P blood coagulation
GO:0031084 C BLOC-2 complex
GO:0043473 P pigmentation
FPKM:3.18 TPM:1.42
1909 A_BomaMSG_c12081_g1_i1
3787bp
uncharacterized_protein_LOC101741379_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0008270 F zinc ion binding
GO:0046872 F metal ion binding
FPKM:50.17 TPM:22.42
1910 A_BomaMSG_c12082_g1_i1
625bp
FPKM:20.27 TPM:9.06
1911 A_BomaMSG_c12083_g1_i1
519bp
LOW_QUALITY_PROTEIN:_cytokine_receptor_[Bombyx_mori]
FPKM:3.83 TPM:1.71
1912 A_BomaMSG_c12083_g2_i1
499bp
LOW_QUALITY_PROTEIN:_cytokine_receptor_[Bombyx_mori]
FPKM:2.89 TPM:1.29
1913 A_BomaMSG_c12084_g1_i1
275bp
FPKM:8.03 TPM:3.59
1914 A_BomaMSG_c12085_g1_i1
668bp
ashwin-like_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005654 C nucleoplasm
GO:0006388 P tRNA splicing, via endonucleolytic cleavage and ligation
GO:0008150 P biological_process
GO:0048598 P embryonic morphogenesis
GO:0072669 C tRNA-splicing ligase complex
FPKM:0.80 TPM:0.36
1915 A_BomaMSG_c12085_g1_i2
656bp
ashwin-like_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005654 C nucleoplasm
GO:0006388 P tRNA splicing, via endonucleolytic cleavage and ligation
GO:0008150 P biological_process
GO:0048598 P embryonic morphogenesis
GO:0072669 C tRNA-splicing ligase complex
FPKM:3.44 TPM:1.54
1916 A_BomaMSG_c12086_g1_i1
250bp
FPKM:2.00 TPM:0.89
1917 A_BomaMSG_c12087_g1_i1
860bp
uncharacterized_protein_LOC101744402_[Bombyx_mori]
FPKM:2.09 TPM:0.93
1918 A_BomaMSG_c12088_g1_i1
270bp
FPKM:1.67 TPM:0.75
1919 A_BomaMSG_c12089_g1_i1
1157bp
multiple_epidermal_growth_factor-like_domains_protein_8_[Bombyx_mori]
GO:0003143 P embryonic heart tube morphogenesis
GO:0005509 F calcium ion binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0007368 P determination of left/right symmetry
GO:0010468 P regulation of gene expression
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030326 P embryonic limb morphogenesis
GO:0030509 P BMP signaling pathway
GO:0035108 P limb morphogenesis
GO:0042074 P cell migration involved in gastrulation
GO:0048704 P embryonic skeletal system morphogenesis
GO:0048842 P positive regulation of axon extension involved in axon guidance
GO:0055113 P epiboly involved in gastrulation with mouth forming second
GO:0060971 P embryonic heart tube left/right pattern formation
GO:0060972 P left/right pattern formation
GO:0060976 P coronary vasculature development
GO:0061371 P determination of heart left/right asymmetry
GO:0070062 C extracellular exosome
GO:0071907 P determination of digestive tract left/right asymmetry
GO:0097094 P craniofacial suture morphogenesis
GO:0097155 P fasciculation of sensory neuron axon
FPKM:2.34 TPM:1.05
1920 A_BomaMSG_c1208_g1_i1
331bp
FPKM:0.00 TPM:0.00
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