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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
1861 A_BomaMSG_c12034_g1_i1
1172bp
zinc_finger_CCHC_domain-containing_protein_10_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0008270 F zinc ion binding
GO:0046872 F metal ion binding
FPKM:29.84 TPM:13.34
1862 A_BomaMSG_c12035_g1_i1
345bp
oocyte_zinc_finger_protein_XlCOF28_[Bombyx_mori]
GO:0000977 F RNA polymerase II transcription regulatory region sequence-specific DNA binding
GO:0001228 F DNA-binding transcription activator activity, RNA polymerase II-specific
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005794 C Golgi apparatus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0006915 P apoptotic process
GO:0006977 P DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest
GO:0007050 P regulation of cell cycle
GO:0010468 P regulation of gene expression
GO:0030154 P cell differentiation
GO:0035914 P skeletal muscle cell differentiation
GO:0043231 C intracellular membrane-bounded organelle
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046872 F metal ion binding
FPKM:4.14 TPM:1.85
1863 A_BomaMSG_c12036_g1_i1
890bp
vacuolar_protein_sorting-associated_protein_37A_[Bombyx_mori]
GO:0000813 C ESCRT I complex
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005768 C endosome
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0006914 P autophagy
GO:0010008 C endosome membrane
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016197 P endosomal transport
GO:0019058 P viral life cycle
GO:0030496 C midbody
GO:0031902 C late endosome membrane
GO:0036258 P multivesicular body assembly
GO:0039702 P viral budding via host ESCRT complex
GO:0048306 F calcium-dependent protein binding
GO:0070062 C extracellular exosome
GO:0075733 P intracellular transport of virus
GO:1902188 P obsolete positive regulation of viral release from host cell
GO:1903774 P positive regulation of viral budding via host ESCRT complex
FPKM:30.48 TPM:13.62
1864 A_BomaMSG_c12037_g1_i1
569bp
SCY1-like_protein_2_[Bombyx_mori]
GO:0002092 P positive regulation of receptor internalization
GO:0004672 F protein kinase activity
GO:0005102 F signaling receptor binding
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005768 C endosome
GO:0005794 C Golgi apparatus
GO:0006468 P protein phosphorylation
GO:0008333 P endosome to lysosome transport
GO:0010008 C endosome membrane
GO:0016020 C membrane
GO:0030136 C clathrin-coated vesicle
GO:0031410 C cytoplasmic vesicle
GO:0048471 C perinuclear region of cytoplasm
GO:0090090 P negative regulation of canonical Wnt signaling pathway
GO:2000286 P receptor internalization involved in canonical Wnt signaling pathway
GO:2000370 P positive regulation of clathrin-dependent endocytosis
FPKM:3.53 TPM:1.58
1865 A_BomaMSG_c12038_g1_i1
342bp
FPKM:3.14 TPM:1.40
1866 A_BomaMSG_c12039_g1_i1
662bp
gastrulation_defective_protein_1_homolog_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0022008 P neurogenesis
FPKM:2.76 TPM:1.23
1867 A_BomaMSG_c1203_g1_i1
519bp
structural_maintenance_of_chromosomes_protein_4_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0007049 P cell cycle
GO:0007067 P mitotic cell cycle
GO:0007076 P mitotic chromosome condensation
GO:0030261 P chromosome condensation
GO:0046982 F protein heterodimerization activity
GO:0051276 P chromosome organization
GO:0051301 P cell division
FPKM:1.46 TPM:0.65
1868 A_BomaMSG_c12040_g1_i1
599bp
ATP-binding_cassette_sub-family_C_member_Sur_isoform_X2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005267 F potassium channel activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005739 C mitochondrion
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0006813 P potassium ion transport
GO:0006932 P substrate-dependent cell migration, cell contraction
GO:0007165 P signal transduction
GO:0008144 F obsolete drug binding
GO:0008152 P metabolic process
GO:0008281 F sulfonylurea receptor activity
GO:0008282 C inward rectifying potassium channel
GO:0010107 P potassium ion import across plasma membrane
GO:0015459 F potassium channel regulator activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016887 F ATP hydrolysis activity
GO:0019905 F syntaxin binding
GO:0030315 C T-tubule
GO:0042493 P response to xenobiotic stimulus
GO:0042626 F ATPase-coupled transmembrane transporter activity
GO:0042802 F identical protein binding
GO:0055085 P transmembrane transport
FPKM:1.80 TPM:0.80
1869 A_BomaMSG_c12041_g1_i1
629bp
hypothetical_protein_M514_23406,_partial_[Trichuris_suis]
FPKM:3.65 TPM:1.63
1870 A_BomaMSG_c12042_g1_i1
513bp
FPKM:2.41 TPM:1.08
1871 A_BomaMSG_c12043_g1_i1
407bp
polynucleotide_5'-hydroxyl-kinase_NOL9_[Bombyx_mori]
FPKM:4.19 TPM:1.87
1872 A_BomaMSG_c12044_g1_i1
243bp
FPKM:3.57 TPM:1.60
1873 A_BomaMSG_c12045_g1_i1
534bp
ATP-binding_cassette_sub-family_B_member_8,_mitochondrial_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0002481 P antigen processing and presentation of exogenous protein antigen via MHC class Ib, TAP-dependent
GO:0002485 P antigen processing and presentation of endogenous peptide antigen via MHC class I via ER pathway, TAP-dependent
GO:0002489 P antigen processing and presentation of endogenous peptide antigen via MHC class Ib via ER pathway, TAP-dependent
GO:0002591 P positive regulation of antigen processing and presentation of peptide antigen via MHC class I
GO:0005524 F ATP binding
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0006810 P transport
GO:0008152 P metabolic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016887 F ATP hydrolysis activity
GO:0042626 F ATPase-coupled transmembrane transporter activity
GO:0055085 P transmembrane transport
FPKM:2.98 TPM:1.33
1874 A_BomaMSG_c12046_g1_i1
1085bp
FPKM:5.18 TPM:2.32
1875 A_BomaMSG_c12047_g1_i1
431bp
NUAK_family_SNF1-like_kinase_1_isoform_X3_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000287 F magnesium ion binding
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006468 P protein phosphorylation
GO:0006915 P apoptotic process
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0030036 P actin cytoskeleton organization
GO:0035556 P intracellular signal transduction
GO:0042149 P cellular response to glucose starvation
GO:0043066 P negative regulation of apoptotic process
GO:0046872 F metal ion binding
FPKM:3.11 TPM:1.39
1876 A_BomaMSG_c12048_g1_i1
415bp
mucin-3A_isoform_X1_[Bombyx_mori]
FPKM:4.06 TPM:1.81
1877 A_BomaMSG_c12049_g1_i1
507bp
FPKM:2.83 TPM:1.26
1878 A_BomaMSG_c1204_g1_i1
321bp
zinc_finger_protein_99_isoform_X2_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000981 F DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0003676 F nucleic acid binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007275 P multicellular organism development
GO:0007362 P terminal region determination
GO:0007366 P periodic partitioning by pair rule gene
GO:0007442 P hindgut morphogenesis
GO:0007480 P imaginal disc-derived leg morphogenesis
GO:0009880 P embryonic pattern specification
GO:0010906 P regulation of glucose metabolic process
GO:0016348 P imaginal disc-derived leg joint morphogenesis
GO:0035220 P wing disc development
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046331 P lateral inhibition
GO:0046872 F metal ion binding
GO:0048617 P embryonic foregut morphogenesis
GO:0048619 P embryonic hindgut morphogenesis
FPKM:1.02 TPM:0.46
1879 A_BomaMSG_c1204_g1_i2
497bp
zinc_finger_protein_660_isoform_X1_[Bombyx_mori]
GO:0000978 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0002218 P activation of innate immune response
GO:0003676 F nucleic acid binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005886 C plasma membrane
GO:0006355 P regulation of transcription, DNA-templated
GO:0007275 P multicellular organism development
GO:0007311 P maternal specification of dorsal/ventral axis, oocyte, germ-line encoded
GO:0008063 P Toll signaling pathway
GO:0008270 F zinc ion binding
GO:0009950 P dorsal/ventral axis specification
GO:0016020 C membrane
GO:0042803 F protein homodimerization activity
GO:0046872 F metal ion binding
FPKM:2.21 TPM:0.99
1880 A_BomaMSG_c12050_g1_i1
307bp
FPKM:2.14 TPM:0.96
1881 A_BomaMSG_c12051_g1_i1
564bp
actin-related_protein_10_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005869 C dynactin complex
GO:0007018 P microtubule-based movement
FPKM:4.23 TPM:1.89
1882 A_BomaMSG_c12053_g1_i1
734bp
probable_ribosome_production_factor_1_[Bombyx_mori]
GO:0000027 P ribosomal large subunit assembly
GO:0000460 P maturation of 5.8S rRNA
GO:0000470 P maturation of LSU-rRNA
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0006364 P rRNA processing
GO:0019843 F rRNA binding
GO:0030687 C preribosome, large subunit precursor
GO:0042134 F rRNA primary transcript binding
GO:0042254 P ribosome biogenesis
FPKM:3.23 TPM:1.44
1883 A_BomaMSG_c12054_g1_i1
849bp
FPKM:4.43 TPM:1.98
1884 A_BomaMSG_c12055_g1_i1
574bp
ribosomal_protein_S13_[Bombyx_mori]
GO:0003735 F structural constituent of ribosome
GO:0005622 C intracellular anatomical structure
GO:0005840 C ribosome
GO:0006412 P translation
GO:0030529 C ribonucleoprotein complex
FPKM:1078.00 TPM:481.73
1885 A_BomaMSG_c12057_g1_i1
381bp
furin-like_convetase_isoform_X3_[Bombyx_mori]
FPKM:3.20 TPM:1.43
1886 A_BomaMSG_c12058_g1_i1
1250bp
transmembrane_BAX_inhibitor_motif-containing_protein_5_isoform_X1_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005515 F protein binding
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0006915 P apoptotic process
GO:0008150 P biological_process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0070062 C extracellular exosome
FPKM:18.44 TPM:8.24
1887 A_BomaMSG_c12059_g1_i1
230bp
myotubularin-related_protein_9_[Bombyx_mori]
GO:0005737 C cytoplasm
FPKM:7.41 TPM:3.31
1888 A_BomaMSG_c1205_g1_i1
210bp
FPKM:1.07 TPM:0.48
1889 A_BomaMSG_c12060_g1_i1
370bp
FPKM:2.75 TPM:1.23
1890 A_BomaMSG_c12065_g1_i1
797bp
pentatricopeptide_repeat-containing_protein_2,_mitochondrial_[Bombyx_mori]
GO:0001822 P kidney development
GO:0001889 P liver development
GO:0005739 C mitochondrion
GO:0006397 P mRNA processing
GO:0007005 P mitochondrion organization
GO:0007507 P heart development
GO:0010468 P regulation of gene expression
GO:0044822 F RNA binding
GO:0048747 P muscle cell development
GO:0050684 P regulation of mRNA processing
GO:0055010 P ventricular cardiac muscle tissue morphogenesis
FPKM:2.81 TPM:1.26
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