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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
1831 A_BomaMSG_c11999_g1_i1
414bp
FPKM:6.37 TPM:2.85
1832 A_BomaMSG_c1199_g1_i1
236bp
FPKM:2.31 TPM:1.03
1833 A_BomaMSG_c119_g1_i1
248bp
uncharacterized_protein_LOC101744361_isoform_X2_[Bombyx_mori]
FPKM:3.12 TPM:1.39
1834 A_BomaMSG_c119_g1_i2
476bp
uncharacterized_protein_LOC101744361_isoform_X2_[Bombyx_mori]
FPKM:1.32 TPM:0.59
1835 A_BomaMSG_c12001_g1_i1
234bp
FPKM:0.79 TPM:0.35
1836 A_BomaMSG_c12002_g1_i1
700bp
FPKM:8.94 TPM:3.99
1837 A_BomaMSG_c12003_g1_i1
201bp
FPKM:0.00 TPM:0.00
1838 A_BomaMSG_c12005_g1_i1
686bp
cyclin_dependent_kinase_9_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000979 F RNA polymerase II core promoter sequence-specific DNA binding
GO:0001223 F transcription coactivator binding
GO:0003677 F DNA binding
GO:0003682 F chromatin binding
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0004693 F cyclin-dependent protein serine/threonine kinase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006281 P DNA repair
GO:0006282 P regulation of DNA repair
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0006367 P transcription initiation from RNA polymerase II promoter
GO:0006368 P transcription elongation from RNA polymerase II promoter
GO:0006468 P protein phosphorylation
GO:0006974 P cellular response to DNA damage stimulus
GO:0007346 P regulation of mitotic cell cycle
GO:0008023 C transcription elongation factor complex
GO:0008024 C cyclin/CDK positive transcription elongation factor complex
GO:0008134 F transcription factor binding
GO:0008283 P cell population proliferation
GO:0008353 F RNA polymerase II CTD heptapeptide repeat kinase activity
GO:0010613 P positive regulation of cardiac muscle hypertrophy
GO:0016020 C membrane
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016605 C PML body
GO:0016740 F transferase activity
GO:0017069 F snRNA binding
GO:0031056 P regulation of histone modification
GO:0031297 P replication fork processing
GO:0033129 P positive regulation of histone phosphorylation
GO:0042493 P response to xenobiotic stimulus
GO:0042795 P snRNA transcription by RNA polymerase II
GO:0043231 C intracellular membrane-bounded organelle
GO:0044212 F transcription cis-regulatory region binding
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0050434 P positive regulation of viral transcription
GO:0051147 P regulation of muscle cell differentiation
GO:0071157 P regulation of cell cycle
GO:0071345 P cellular response to cytokine stimulus
GO:0097322 F 7SK snRNA binding
GO:1900364 P negative regulation of mRNA polyadenylation
GO:1903839 P positive regulation of mRNA 3'-UTR binding
GO:2001168 P positive regulation of histone H2B ubiquitination
FPKM:3.01 TPM:1.35
1839 A_BomaMSG_c12006_g1_i1
259bp
FPKM:1.23 TPM:0.55
1840 A_BomaMSG_c12008_g1_i1
727bp
FPKM:2.92 TPM:1.30
1841 A_BomaMSG_c12009_g1_i1
282bp
FPKM:9.14 TPM:4.08
1842 A_BomaMSG_c12010_g1_i1
659bp
ribonucleases_P/MRP_protein_subunit_POP1_[Bombyx_mori]
GO:0000171 F ribonuclease MRP activity
GO:0000172 C ribonuclease MRP complex
GO:0001682 P tRNA 5'-leader removal
GO:0004526 F ribonuclease P activity
GO:0005515 F protein binding
GO:0005615 C extracellular space
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005655 C nucleolar ribonuclease P complex
GO:0005730 C nucleolus
GO:0006396 P RNA processing
GO:0008033 P tRNA processing
GO:0016078 P tRNA catabolic process
GO:0016787 F hydrolase activity
GO:0044822 F RNA binding
GO:0090501 P RNA phosphodiester bond hydrolysis
GO:0090502 P RNA phosphodiester bond hydrolysis, endonucleolytic
FPKM:1.72 TPM:0.77
1843 A_BomaMSG_c12011_g1_i1
600bp
FPKM:2.69 TPM:1.20
1844 A_BomaMSG_c12012_g1_i1
452bp
general_transcription_factor_IIF_subunit_1_isoform_X2_[Bombyx_mori]
GO:0001096 F TFIIF-class transcription factor complex binding
GO:0003677 F DNA binding
GO:0003824 F catalytic activity
GO:0005634 C nucleus
GO:0005674 C transcription factor TFIIF complex
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0006367 P transcription initiation from RNA polymerase II promoter
GO:0016740 F transferase activity
GO:0022008 P neurogenesis
GO:0032968 P positive regulation of transcription elongation from RNA polymerase II promoter
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0060261 P positive regulation of transcription initiation from RNA polymerase II promoter
FPKM:8.91 TPM:3.98
1845 A_BomaMSG_c12013_g1_i1
242bp
FPKM:5.05 TPM:2.26
1846 A_BomaMSG_c12014_g1_i1
310bp
FPKM:4.62 TPM:2.06
1847 A_BomaMSG_c12017_g1_i1
234bp
FPKM:1.57 TPM:0.70
1848 A_BomaMSG_c12018_g1_i1
601bp
prolyl_3-hydroxylase_sudestada1_[Bombyx_mori]
GO:0005506 F iron ion binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006417 P regulation of translation
GO:0006449 P regulation of translational termination
GO:0016491 F oxidoreductase activity
GO:0016705 F oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0016706 F 2-oxoglutarate-dependent dioxygenase activity
GO:0018126 P protein hydroxylation
GO:0019511 P peptidyl-proline hydroxylation
GO:0031418 F L-ascorbic acid binding
GO:0031543 F peptidyl-proline dioxygenase activity
GO:0046872 F metal ion binding
GO:0051213 F dioxygenase activity
GO:0055114 P obsolete oxidation-reduction process
FPKM:4.78 TPM:2.13
1849 A_BomaMSG_c12019_g1_i1
742bp
FPKM:2.73 TPM:1.22
1850 A_BomaMSG_c1201_g1_i1
242bp
FPKM:0.72 TPM:0.32
1851 A_BomaMSG_c12020_g1_i1
915bp
vacuolar_protein_sorting-associated_protein_33A-like_[Bombyx_mori]
GO:0000149 F SNARE binding
GO:0005515 F protein binding
GO:0005764 C lysosome
GO:0005765 C lysosomal membrane
GO:0005768 C endosome
GO:0005829 C cytosol
GO:0006622 P protein targeting to lysosome
GO:0006727 P ommochrome biosynthetic process
GO:0006810 P transport
GO:0006897 P endocytosis
GO:0006904 P vesicle docking involved in exocytosis
GO:0007032 P endosome organization
GO:0007040 P lysosome organization
GO:0007220 P Notch receptor processing
GO:0008057 P eye pigment granule organization
GO:0008333 P endosome to lysosome transport
GO:0008340 P determination of adult lifespan
GO:0008593 P regulation of Notch signaling pathway
GO:0009267 P cellular response to starvation
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016192 P vesicle-mediated transport
GO:0016197 P endosomal transport
GO:0019905 F syntaxin binding
GO:0030897 C HOPS complex
GO:0031396 P regulation of protein ubiquitination
GO:0031902 C late endosome membrane
GO:0033263 C CORVET complex
GO:0035542 P regulation of SNARE complex assembly
GO:0045746 P negative regulation of Notch signaling pathway
GO:0046907 P intracellular transport
GO:0048072 P compound eye pigmentation
GO:0097352 P autophagosome maturation
FPKM:3.26 TPM:1.46
1852 A_BomaMSG_c12022_g1_i1
963bp
FYVE,_RhoGEF_and_PH_domain-containing_protein_3_[Bombyx_mori]
GO:0005089 F guanyl-nucleotide exchange factor activity
GO:0035023 P regulation of Rho protein signal transduction
GO:0043547 P positive regulation of GTPase activity
FPKM:3.15 TPM:1.41
1853 A_BomaMSG_c12023_g1_i1
579bp
FPKM:7.22 TPM:3.23
1854 A_BomaMSG_c12024_g1_i1
359bp
Calcium-independent_protein_kinase_C_[Papilio_xuthus]
GO:0000166 F nucleotide binding
GO:0002376 P immune system process
GO:0003785 F actin monomer binding
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0004697 F protein kinase C activity
GO:0004699 F calcium-independent protein kinase C activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0005856 C cytoskeleton
GO:0005886 C plasma membrane
GO:0006468 P protein phosphorylation
GO:0007049 P cell cycle
GO:0007155 P cell adhesion
GO:0010634 P positive regulation of epithelial cell migration
GO:0010763 P positive regulation of fibroblast migration
GO:0016020 C membrane
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0030838 P positive regulation of actin filament polymerization
GO:0031663 P lipopolysaccharide-mediated signaling pathway
GO:0032467 P positive regulation of cytokinesis
GO:0035556 P intracellular signal transduction
GO:0035669 P TRAM-dependent toll-like receptor 4 signaling pathway
GO:0046872 F metal ion binding
GO:0048471 C perinuclear region of cytoplasm
GO:0051301 P cell division
GO:0071944 C cell periphery
GO:0090303 P positive regulation of wound healing
FPKM:5.15 TPM:2.30
1855 A_BomaMSG_c12026_g1_i1
315bp
protein_NDRG3_[Bombyx_mori]
GO:0005737 C cytoplasm
GO:0007165 P signal transduction
GO:0007275 P multicellular organism development
GO:0007399 P nervous system development
GO:0016055 P Wnt signaling pathway
GO:0030154 P cell differentiation
GO:0030426 C growth cone
GO:0042995 C cell projection
GO:0048471 C perinuclear region of cytoplasm
FPKM:3.26 TPM:1.45
1856 A_BomaMSG_c12027_g1_i1
451bp
FPKM:3.80 TPM:1.70
1857 A_BomaMSG_c12028_g1_i1
272bp
FPKM:10.97 TPM:4.90
1858 A_BomaMSG_c1202_g1_i1
398bp
FPKM:6.24 TPM:2.79
1859 A_BomaMSG_c12031_g1_i1
841bp
FPKM:3.90 TPM:1.74
1860 A_BomaMSG_c12033_g1_i1
1711bp
uncharacterized_protein_LOC101736145_isoform_X1_[Bombyx_mori]
GO:0004842 F ubiquitin-protein transferase activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0007275 P multicellular organism development
GO:0007423 P sensory organ development
GO:0007601 P visual perception
GO:0008270 F zinc ion binding
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0045676 P regulation of R7 cell differentiation
GO:0046872 F metal ion binding
GO:0050896 P response to stimulus
FPKM:22.77 TPM:10.18
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