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Search Assembled RNA-Seq

No.

Name
Length

Chromosome No./Scaffold Id
Scaffold Length

BLAST (vs nr)

Gene ontology

Transcript
Level

1531

A_BomaMSG_c11634_g1_i1

361bp

FPKM:3.19 TPM:1.42

1532

A_BomaMSG_c11637_g1_i1

222bp

uncharacterized_protein_LOC101744043_isoform_X2_[Bombyx_mori]

GO:0016579	P	protein deubiquitination
GO:0036459	F	thiol-dependent deubiquitinase

FPKM:4.54 TPM:2.03

1533

A_BomaMSG_c11638_g1_i1

259bp

G-protein_coupled_receptor_Mth2_[Bombyx_mori]

FPKM:2.74 TPM:1.23

1534

A_BomaMSG_c11638_g1_i2

375bp

G-protein_coupled_receptor_Mth2_[Bombyx_mori]

GO:0004871	F	obsolete signal transducer activity
GO:0004888	F	transmembrane signaling receptor activity
GO:0004930	F	G protein-coupled receptor activity
GO:0005886	C	plasma membrane
GO:0006950	P	response to stress
GO:0007165	P	signal transduction
GO:0007166	P	cell surface receptor signaling pathway
GO:0007186	P	G protein-coupled receptor signaling pathway
GO:0008340	P	determination of adult lifespan
GO:0016020	C	membrane
GO:0016021	C	integral component of membrane
GO:0042594	P	response to starvation

FPKM:3.14 TPM:1.40

1535

A_BomaMSG_c11639_g1_i1

299bp

sialin_[Bombyx_mori]

FPKM:6.30 TPM:2.82

1536

A_BomaMSG_c1163_g1_i1

315bp

FPKM:2.44 TPM:1.09

1537

A_BomaMSG_c11640_g1_i1

212bp

FPKM:1.04 TPM:0.46

1538

A_BomaMSG_c11641_g1_i1

248bp

FPKM:4.07 TPM:1.82

1539

A_BomaMSG_c11642_g1_i1

285bp

FPKM:3.97 TPM:1.77

1540

A_BomaMSG_c11643_g1_i1

201bp

FPKM:3.69 TPM:1.65

1541

A_BomaMSG_c11644_g1_i1

323bp

serine/threonine-protein_kinase_par-1_isoform_X1_[Bombyx_mori]

GO:0000166	F	nucleotide binding
GO:0000287	F	magnesium ion binding
GO:0004672	F	protein kinase activity
GO:0004674	F	protein serine/threonine kinase activity
GO:0005524	F	ATP binding
GO:0005634	C	nucleus
GO:0005737	C	cytoplasm
GO:0006468	P	protein phosphorylation
GO:0016301	F	kinase activity
GO:0016310	P	phosphorylation
GO:0016740	F	transferase activity
GO:0035556	P	intracellular signal transduction
GO:0046872	F	metal ion binding

FPKM:1.94 TPM:0.87

1542

A_BomaMSG_c11646_g1_i1

268bp

DNA_cytosine-5_methyltransferase_[Bombyx_mori]

FPKM:4.53 TPM:2.03

1543

A_BomaMSG_c11646_g1_i2

228bp

DNA_cytosine-5_methyltransferase_isoform_X1_[Bombyx_mori]

GO:0000122	P	negative regulation of transcription by RNA polymerase II
GO:0000792	C	heterochromatin
GO:0003677	F	DNA binding
GO:0003682	F	chromatin binding
GO:0003723	F	RNA binding
GO:0003886	F	DNA (cytosine-5-)-methyltransferase activity
GO:0005634	C	nucleus
GO:0005657	C	replication fork
GO:0005721	C	pericentric heterochromatin
GO:0006306	P	DNA methylation
GO:0006351	P	transcription, DNA-templated
GO:0006355	P	regulation of transcription, DNA-templated
GO:0007265	P	Ras protein signal transduction
GO:0008168	F	methyltransferase activity
GO:0008270	F	zinc ion binding
GO:0008327	F	methyl-CpG binding
GO:0009008	F	DNA-methyltransferase activity
GO:0010216	P	maintenance of DNA methylation
GO:0010468	P	regulation of gene expression
GO:0010628	P	positive regulation of gene expression
GO:0016458	P	obsolete gene silencing
GO:0016568	P	chromatin organization
GO:0016740	F	transferase activity
GO:0032259	P	methylation
GO:0042127	P	regulation of cell population proliferation
GO:0045892	P	negative regulation of transcription, DNA-templated
GO:0046872	F	metal ion binding
GO:0051571	P	positive regulation of histone H3-K4 methylation
GO:0051573	P	negative regulation of histone H3-K9 methylation
GO:0071230	P	cellular response to amino acid stimulus
GO:0090116	P	C-5 methylation of cytosine
GO:0090309	P	positive regulation of DNA methylation-dependent heterochromatin assembly
GO:1990841	F	promoter-specific chromatin binding

FPKM:0.00 TPM:0.00

1544

A_BomaMSG_c11647_g1_i1

551bp

cytochrome_c_oxidase_assembly_protein_COX19_[Bombyx_mori]

GO:0005737	C	cytoplasm
GO:0005758	C	mitochondrial intermembrane space
GO:0005829	C	cytosol
GO:0009060	P	aerobic respiration
GO:0033617	P	mitochondrial cytochrome c oxidase assembly

FPKM:9.90 TPM:4.43

1545

A_BomaMSG_c11648_g1_i1

225bp

FPKM:4.37 TPM:1.95

1546

A_BomaMSG_c11653_g1_i1

370bp

FPKM:11.31 TPM:5.05

1547

A_BomaMSG_c11654_g1_i1

274bp

FPKM:0.00 TPM:0.00

1548

A_BomaMSG_c11655_g1_i1

216bp

semaphorin-1A_[Bombyx_mori]

FPKM:1.97 TPM:0.88

1549

A_BomaMSG_c11656_g1_i1

235bp

mitochondrial_chaperone_BCS1_[Bombyx_mori]

GO:0000166	F	nucleotide binding
GO:0005524	F	ATP binding
GO:0005739	C	mitochondrion
GO:0005743	C	mitochondrial inner membrane
GO:0016020	C	membrane
GO:0016021	C	integral component of membrane
GO:0034551	P	mitochondrial respiratory chain complex III assembly