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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
1471 A_BomaMSG_c11565_g1_i1
474bp
FPKM:3.10 TPM:1.39
1472 A_BomaMSG_c11565_g1_i2
270bp
FPKM:0.59 TPM:0.26
1473 A_BomaMSG_c11566_g1_i1
324bp
fragile_X_mental_retardation_syndrome-related_protein_1_homolog_A-like_[Bombyx_mori]
FPKM:5.70 TPM:2.55
1474 A_BomaMSG_c11566_g1_i2
316bp
synaptic_functional_regulator_FMR1-like_isoform_X1_[Bombyx_mori]
FPKM:2.12 TPM:0.95
1475 A_BomaMSG_c11567_g1_i1
401bp
FPKM:2.41 TPM:1.08
1476 A_BomaMSG_c11568_g1_i1
362bp
U11/U12_small_nuclear_ribonucleoprotein_25_kDa_protein_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005689 C U12-type spliceosomal complex
GO:0005737 C cytoplasm
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0045171 C intercellular bridge
FPKM:5.71 TPM:2.55
1477 A_BomaMSG_c1156_g1_i1
842bp
spatacsin_[Bombyx_mori]
FPKM:3.02 TPM:1.35
1478 A_BomaMSG_c11570_g1_i1
231bp
FPKM:2.44 TPM:1.09
1479 A_BomaMSG_c11571_g1_i1
347bp
LOW_QUALITY_PROTEIN:_uncharacterized_protein_KIAA1109_[Bombyx_mori]
FPKM:3.41 TPM:1.52
1480 A_BomaMSG_c11571_g2_i1
456bp
LOW_QUALITY_PROTEIN:_uncharacterized_protein_KIAA1109_[Bombyx_mori]
FPKM:2.86 TPM:1.28
1481 A_BomaMSG_c11572_g1_i1
394bp
LOW_QUALITY_PROTEIN:_CAD_protein_[Bombyx_mori]
GO:0000050 P urea cycle
GO:0000166 F nucleotide binding
GO:0001889 P liver development
GO:0002134 F UTP binding
GO:0003824 F catalytic activity
GO:0004070 F aspartate carbamoyltransferase activity
GO:0004087 F carbamoyl-phosphate synthase (ammonia) activity
GO:0004088 F carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
GO:0004151 F dihydroorotase activity
GO:0004672 F protein kinase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006207 P 'de novo' pyrimidine nucleobase biosynthetic process
GO:0006221 P pyrimidine nucleotide biosynthetic process
GO:0006228 P UTP biosynthetic process
GO:0006520 P cellular amino acid metabolic process
GO:0006526 P arginine biosynthetic process
GO:0006541 P glutamine metabolic process
GO:0006807 P nitrogen compound metabolic process
GO:0007507 P heart development
GO:0007565 P female pregnancy
GO:0007595 P lactation
GO:0008152 P metabolic process
GO:0008270 F zinc ion binding
GO:0014075 P response to amine
GO:0016020 C membrane
GO:0016363 C nuclear matrix
GO:0016597 F amino acid binding
GO:0016740 F transferase activity
GO:0016743 F carboxyl- or carbamoyltransferase activity
GO:0016787 F hydrolase activity
GO:0016810 F hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds
GO:0016812 F hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
GO:0016874 F ligase activity
GO:0017144 P xenobiotic metabolic process
GO:0018107 P peptidyl-threonine phosphorylation
GO:0019899 F enzyme binding
GO:0031000 P response to caffeine
GO:0031100 P animal organ regeneration
GO:0033574 P response to testosterone
GO:0035690 P cellular response to xenobiotic stimulus
GO:0042802 F identical protein binding
GO:0042995 C cell projection
GO:0043025 C neuronal cell body
GO:0043195 C terminal bouton
GO:0043234 C protein-containing complex
GO:0044205 P 'de novo' UMP biosynthetic process
GO:0046777 P protein autophosphorylation
GO:0046872 F metal ion binding
GO:0051414 P response to cortisol
GO:0070062 C extracellular exosome
GO:0071364 P cellular response to epidermal growth factor stimulus
FPKM:1.93 TPM:0.86
1482 A_BomaMSG_c11573_g1_i1
389bp
calcium/calmodulin-dependent_3',5'-cyclic_nucleotide_phosphodiesterase_1_isoform_X3_[Bombyx_mori]
GO:0004114 F 3',5'-cyclic-nucleotide phosphodiesterase activity
GO:0004117 F calmodulin-dependent cyclic-nucleotide phosphodiesterase activity
GO:0005516 F calmodulin binding
GO:0005829 C cytosol
GO:0007165 P signal transduction
GO:0008081 F phosphoric diester hydrolase activity
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
FPKM:4.50 TPM:2.01
1483 A_BomaMSG_c11574_g1_i1
340bp
FPKM:8.84 TPM:3.95
1484 A_BomaMSG_c11576_g1_i1
217bp
FPKM:7.76 TPM:3.47
1485 A_BomaMSG_c11577_g1_i1
296bp
protein_wntless_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0005768 C endosome
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0005794 C Golgi apparatus
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0007275 P multicellular organism development
GO:0007367 P segment polarity determination
GO:0008587 P imaginal disc-derived wing margin morphogenesis
GO:0010008 C endosome membrane
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016055 P Wnt signaling pathway
GO:0017147 F Wnt-protein binding
GO:0030054 C cell junction
GO:0030177 P positive regulation of Wnt signaling pathway
GO:0030285 C integral component of synaptic vesicle membrane
GO:0031227 C intrinsic component of endoplasmic reticulum membrane
GO:0031228 C intrinsic component of Golgi membrane
GO:0031302 C intrinsic component of endosome membrane
GO:0031594 C neuromuscular junction
GO:0033157 P regulation of intracellular protein transport
GO:0042734 C presynaptic membrane
GO:0045202 C synapse
GO:0045211 C postsynaptic membrane
GO:0050714 P positive regulation of protein secretion
GO:0061357 P positive regulation of Wnt protein secretion
FPKM:1.38 TPM:0.62
1486 A_BomaMSG_c11578_g1_i1
494bp
FPKM:3.13 TPM:1.40
1487 A_BomaMSG_c11579_g1_i1
422bp
FPKM:2.97 TPM:1.33
1488 A_BomaMSG_c1157_g1_i1
268bp
FPKM:7.37 TPM:3.29
1489 A_BomaMSG_c11580_g1_i1
508bp
U3_small_nucleolar_RNA-interacting_protein_2_[Bombyx_mori]
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0006364 P rRNA processing
GO:0030515 F snoRNA binding
GO:0030529 C ribonucleoprotein complex
GO:0031428 C box C/D RNP complex
GO:0032040 C small-subunit processome
GO:0034511 F U3 snoRNA binding
GO:0044822 F RNA binding
FPKM:3.95 TPM:1.76
1490 A_BomaMSG_c11581_g1_i1
436bp
uncharacterized_protein_LOC101746298_isoform_X2_[Bombyx_mori]
FPKM:3.29 TPM:1.47
1491 A_BomaMSG_c11583_g1_i1
522bp
uncharacterized_protein_LOC101746483_isoform_X1_[Bombyx_mori]
FPKM:2.28 TPM:1.02
1492 A_BomaMSG_c11583_g1_i2
239bp
FPKM:0.41 TPM:0.18
1493 A_BomaMSG_c11583_g1_i3
361bp
uncharacterized_protein_LOC101746483_isoform_X2_[Bombyx_mori]
FPKM:1.22 TPM:0.55
1494 A_BomaMSG_c11584_g1_i1
546bp
transcription_factor_Adf-1_[Bombyx_mori]
FPKM:2.38 TPM:1.06
1495 A_BomaMSG_c11585_g1_i1
351bp
FPKM:2.34 TPM:1.05
1496 A_BomaMSG_c11586_g1_i1
261bp
FPKM:3.01 TPM:1.34
1497 A_BomaMSG_c11589_g1_i1
384bp
FPKM:15.23 TPM:6.81
1498 A_BomaMSG_c1158_g1_i1
464bp
Inositol_triphosphate_3-kinase_c_[Operophtera_brumata]
FPKM:1.93 TPM:0.86
1499 A_BomaMSG_c1158_g1_i2
341bp
FPKM:0.00 TPM:0.00
1500 A_BomaMSG_c11591_g1_i1
325bp
cytosolic_carboxypeptidase_1_[Bombyx_mori]
GO:0001754 P eye photoreceptor cell differentiation
GO:0004180 F carboxypeptidase activity
GO:0004181 F metallocarboxypeptidase activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005829 C cytosol
GO:0006508 P proteolysis
GO:0007005 P mitochondrion organization
GO:0008233 F peptidase activity
GO:0008237 F metallopeptidase activity
GO:0008270 F zinc ion binding
GO:0015631 F tubulin binding
GO:0016787 F hydrolase activity
GO:0021702 P cerebellar Purkinje cell differentiation
GO:0021772 P olfactory bulb development
GO:0035609 P C-terminal protein deglutamylation
GO:0035610 P protein side chain deglutamylation
GO:0046872 F metal ion binding
GO:0050905 P neuromuscular process
FPKM:3.45 TPM:1.54
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