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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
1441 A_BomaMSG_c11534_g1_i2
264bp
peptidylprolyl_isomerase_domain_and_WD_repeat-containing_protein_1_isoform_X2_[Bombyx_mori]
GO:0000413 P protein peptidyl-prolyl isomerization
GO:0003755 F peptidyl-prolyl cis-trans isomerase activity
GO:0005634 C nucleus
GO:0005681 C spliceosomal complex
GO:0006397 P mRNA processing
GO:0006457 P protein folding
GO:0008380 P RNA splicing
GO:0016853 F isomerase activity
GO:0071013 C catalytic step 2 spliceosome
FPKM:2.75 TPM:1.23
1442 A_BomaMSG_c11535_g1_i1
343bp
nucleolar_protein_10_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0044822 F RNA binding
FPKM:3.48 TPM:1.56
1443 A_BomaMSG_c11536_g1_i1
395bp
uncharacterized_protein_LOC101736183_[Bombyx_mori]
GO:0000060 P obsolete protein import into nucleus, translocation
GO:0002268 P follicular dendritic cell differentiation
GO:0002315 P marginal zone B cell differentiation
GO:0002455 P humoral immune response mediated by circulating immunoglobulin
GO:0002467 P germinal center formation
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006974 P cellular response to DNA damage stimulus
GO:0007249 P I-kappaB kinase/NF-kappaB signaling
GO:0008134 F transcription factor binding
GO:0009615 P response to virus
GO:0010225 P response to UV-C
GO:0019730 P antimicrobial humoral response
GO:0030198 P extracellular matrix organization
GO:0030330 P DNA damage response, signal transduction by p53 class mediator
GO:0032729 P positive regulation of interferon-gamma production
GO:0032996 C Bcl3-Bcl10 complex
GO:0033257 C Bcl3/NF-kappaB2 complex
GO:0042088 P T-helper 1 type immune response
GO:0042345 P regulation of NIK/NF-kappaB signaling
GO:0042536 P negative regulation of tumor necrosis factor production
GO:0042742 P defense response to bacterium
GO:0042771 P intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator
GO:0042832 P defense response to protozoan
GO:0042981 P regulation of apoptotic process
GO:0043066 P negative regulation of apoptotic process
GO:0043234 C protein-containing complex
GO:0045064 P T-helper 2 cell differentiation
GO:0045082 P positive regulation of interleukin-10 production
GO:0045171 C intercellular bridge
GO:0045415 P negative regulation of interleukin-8 production
GO:0045727 P positive regulation of translation
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0048471 C perinuclear region of cytoplasm
GO:0048536 P spleen development
GO:0051101 P regulation of DNA binding
FPKM:3.29 TPM:1.47
1444 A_BomaMSG_c11537_g1_i1
247bp
FPKM:1.37 TPM:0.61
1445 A_BomaMSG_c11538_g1_i1
242bp
probable_phospholipid-transporting_ATPase_IM_isoform_X2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000287 F magnesium ion binding
GO:0004012 F ATPase-coupled intramembrane lipid transporter activity
GO:0005524 F ATP binding
GO:0005794 C Golgi apparatus
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0006869 P lipid transport
GO:0007030 P Golgi organization
GO:0008152 P metabolic process
GO:0015914 P phospholipid transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016787 F hydrolase activity
GO:0045332 P phospholipid translocation
GO:0046872 F metal ion binding
FPKM:3.07 TPM:1.37
1446 A_BomaMSG_c11538_g1_i2
521bp
probable_phospholipid-transporting_ATPase_IM_isoform_X2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000287 F magnesium ion binding
GO:0004012 F ATPase-coupled intramembrane lipid transporter activity
GO:0005524 F ATP binding
GO:0005794 C Golgi apparatus
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0006869 P lipid transport
GO:0007030 P Golgi organization
GO:0008152 P metabolic process
GO:0015914 P phospholipid transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016787 F hydrolase activity
GO:0045332 P phospholipid translocation
GO:0046872 F metal ion binding
FPKM:3.22 TPM:1.44
1447 A_BomaMSG_c11539_g1_i1
781bp
LOW_QUALITY_PROTEIN:_mediator_of_RNA_polymerase_II_transcription_subunit_23_[Bombyx_mori]
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
FPKM:4.59 TPM:2.05
1448 A_BomaMSG_c1153_g1_i1
574bp
NFX1-type_zinc_finger-containing_protein_1_[Bombyx_mori]
GO:0003700 F DNA-binding transcription factor activity
GO:0005575 C cellular_component
GO:0005634 C nucleus
GO:0006355 P regulation of transcription, DNA-templated
GO:0008150 P biological_process
GO:0008270 F zinc ion binding
GO:0044822 F RNA binding
GO:0046872 F metal ion binding
FPKM:2.38 TPM:1.06
1449 A_BomaMSG_c11540_g1_i1
455bp
LOW_QUALITY_PROTEIN:_rap_guanine_nucleotide_exchange_factor_2_[Bombyx_mori]
GO:0001568 P blood vessel development
GO:0001764 P neuron migration
GO:0005085 F guanyl-nucleotide exchange factor activity
GO:0005088 F guanyl-nucleotide exchange factor activity
GO:0005096 F GTPase activator activity
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005768 C endosome
GO:0005770 C late endosome
GO:0005886 C plasma membrane
GO:0005911 C cell-cell junction
GO:0007165 P signal transduction
GO:0007186 P G protein-coupled receptor signaling pathway
GO:0007218 P neuropeptide signaling pathway
GO:0007264 P small GTPase mediated signal transduction
GO:0007275 P multicellular organism development
GO:0007399 P nervous system development
GO:0008285 P negative regulation of cell population proliferation
GO:0010976 P positive regulation of neuron projection development
GO:0016020 C membrane
GO:0017034 F guanyl-nucleotide exchange factor activity
GO:0019901 F protein kinase binding
GO:0019933 P cAMP-mediated signaling
GO:0021591 P ventricular system development
GO:0021884 P forebrain neuron development
GO:0030054 C cell junction
GO:0030154 P cell differentiation
GO:0030165 F PDZ domain binding
GO:0030552 F cAMP binding
GO:0031175 P neuron projection development
GO:0031547 P brain-derived neurotrophic factor receptor signaling pathway
GO:0031697 F beta-1 adrenergic receptor binding
GO:0032092 P positive regulation of protein binding
GO:0032486 P Rap protein signal transduction
GO:0038180 P nerve growth factor signaling pathway
GO:0042127 P regulation of cell population proliferation
GO:0043005 C neuron projection
GO:0043025 C neuronal cell body
GO:0043234 C protein-containing complex
GO:0043547 P positive regulation of GTPase activity
GO:0043950 P positive regulation of cAMP-mediated signaling
GO:0045202 C synapse
GO:0045860 P positive regulation of protein kinase activity
GO:0048022 P negative regulation of melanin biosynthetic process
GO:0048167 P regulation of synaptic plasticity
GO:0048471 C perinuclear region of cytoplasm
GO:0050699 F WW domain binding
GO:0050774 P negative regulation of dendrite morphogenesis
GO:0061028 P establishment of endothelial barrier
GO:0070374 P positive regulation of ERK1 and ERK2 cascade
GO:0071320 P cellular response to cAMP
GO:0071321 P cellular response to cGMP
GO:0071880 P adenylate cyclase-activating adrenergic receptor signaling pathway
GO:1901888 P regulation of cell junction assembly
GO:1990090 P cellular response to nerve growth factor stimulus
GO:2000481 P positive regulation of cAMP-dependent protein kinase activity
GO:2000670 P positive regulation of dendritic cell apoptotic process
GO:2001214 P positive regulation of vasculogenesis
GO:2001224 P positive regulation of neuron migration
FPKM:3.31 TPM:1.48
1450 A_BomaMSG_c11541_g1_i1
709bp
FPKM:5.42 TPM:2.42
1451 A_BomaMSG_c11542_g1_i1
388bp
FPKM:3.11 TPM:1.39
1452 A_BomaMSG_c11543_g1_i1
209bp
uncharacterized_protein_LOC101743232_[Bombyx_mori]
FPKM:10.86 TPM:4.85
1453 A_BomaMSG_c11545_g1_i1
332bp
PREDICTED:_piggyBac_transposable_element-derived_protein_4-like_[Papilio_xuthus]
FPKM:1.60 TPM:0.71
1454 A_BomaMSG_c11545_g1_i2
393bp
PREDICTED:_piggyBac_transposable_element-derived_protein_4-like_[Papilio_xuthus]
FPKM:0.46 TPM:0.21
1455 A_BomaMSG_c11547_g1_i1
231bp
FPKM:3.26 TPM:1.46
1456 A_BomaMSG_c11549_g1_i1
283bp
FPKM:4.53 TPM:2.03
1457 A_BomaMSG_c11552_g1_i1
308bp
FPKM:4.67 TPM:2.09
1458 A_BomaMSG_c11553_g1_i1
549bp
FPKM:4.22 TPM:1.88
1459 A_BomaMSG_c11554_g1_i1
401bp
FPKM:2.41 TPM:1.08
1460 A_BomaMSG_c11555_g1_i1
511bp
endonuclease-reverse_transcriptase_[Bombyx_mori]
FPKM:3.36 TPM:1.50
1461 A_BomaMSG_c11556_g1_i1
237bp
LOW_QUALITY_PROTEIN:_DNA_replication_licensing_factor_Mcm6_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003677 F DNA binding
GO:0003678 F DNA helicase activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0006260 P DNA replication
GO:0006270 P DNA replication initiation
GO:0007049 P cell cycle
GO:0007067 P mitotic cell cycle
GO:0016787 F hydrolase activity
GO:0032508 P DNA duplex unwinding
GO:0042555 C MCM complex
GO:0046872 F metal ion binding
GO:0051301 P cell division
FPKM:5.33 TPM:2.38
1462 A_BomaMSG_c11558_g1_i1
406bp
ataxin-2-like_protein_[Bombyx_mori]
FPKM:2.10 TPM:0.94
1463 A_BomaMSG_c11559_g1_i1
566bp
facilitated_trehalose_transporter_Tret1_isoform_X2_[Bombyx_mori]
GO:0005215 F transporter activity
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0008643 P carbohydrate transport
GO:0015574 F trehalose transmembrane transporter activity
GO:0015771 P trehalose transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0022857 F transmembrane transporter activity
GO:0022891 F transmembrane transporter activity
GO:0055085 P transmembrane transport
FPKM:3.07 TPM:1.37
1464 A_BomaMSG_c11561_g1_i1
639bp
U1_small_nuclear_ribonucleoprotein_A_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005681 C spliceosomal complex
GO:0005685 C U1 snRNP
GO:0005686 C U2 snRNP
GO:0006397 P mRNA processing
GO:0007539 P primary sex determination, soma
GO:0008266 F poly(U) RNA binding
GO:0008380 P RNA splicing
GO:0017069 F snRNA binding
GO:0019099 P female germ-line sex determination
GO:0030529 C ribonucleoprotein complex
GO:0030532 C small nuclear ribonucleoprotein complex
GO:0030619 F U1 snRNA binding
GO:0030620 F U2 snRNA binding
GO:0035614 F snRNA stem-loop binding
GO:0042802 F identical protein binding
GO:0043234 C protein-containing complex
GO:0048477 P oogenesis
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
GO:0097158 F pre-mRNA intronic pyrimidine-rich binding
FPKM:5.55 TPM:2.48
1465 A_BomaMSG_c11561_g1_i2
300bp
U1_small_nuclear_ribonucleoprotein_A_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005681 C spliceosomal complex
GO:0005685 C U1 snRNP
GO:0005686 C U2 snRNP
GO:0006397 P mRNA processing
GO:0007539 P primary sex determination, soma
GO:0008266 F poly(U) RNA binding
GO:0008380 P RNA splicing
GO:0017069 F snRNA binding
GO:0019099 P female germ-line sex determination
GO:0030529 C ribonucleoprotein complex
GO:0030532 C small nuclear ribonucleoprotein complex
GO:0030619 F U1 snRNA binding
GO:0030620 F U2 snRNA binding
GO:0035614 F snRNA stem-loop binding
GO:0042802 F identical protein binding
GO:0043234 C protein-containing complex
GO:0048477 P oogenesis
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
GO:0097158 F pre-mRNA intronic pyrimidine-rich binding
FPKM:0.00 TPM:0.00
1466 A_BomaMSG_c11561_g1_i3
231bp
U1_small_nuclear_ribonucleoprotein_A_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005681 C spliceosomal complex
GO:0005685 C U1 snRNP
GO:0005686 C U2 snRNP
GO:0006397 P mRNA processing
GO:0007539 P primary sex determination, soma
GO:0008266 F poly(U) RNA binding
GO:0008380 P RNA splicing
GO:0017069 F snRNA binding
GO:0019099 P female germ-line sex determination
GO:0030529 C ribonucleoprotein complex
GO:0030532 C small nuclear ribonucleoprotein complex
GO:0030619 F U1 snRNA binding
GO:0030620 F U2 snRNA binding
GO:0035614 F snRNA stem-loop binding
GO:0042802 F identical protein binding
GO:0043234 C protein-containing complex
GO:0048477 P oogenesis
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
GO:0097158 F pre-mRNA intronic pyrimidine-rich binding
FPKM:2.97 TPM:1.33
1467 A_BomaMSG_c11562_g1_i1
557bp
FPKM:7.09 TPM:3.17
1468 A_BomaMSG_c11562_g1_i2
310bp
FPKM:2.14 TPM:0.96
1469 A_BomaMSG_c11563_g1_i1
805bp
DNA_polymerase_delta_catalytic_subunit_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003887 F DNA-directed DNA polymerase activity
GO:0004518 F nuclease activity
GO:0004527 F exonuclease activity
GO:0005634 C nucleus
GO:0005875 C microtubule associated complex
GO:0006260 P DNA replication
GO:0006272 P leading strand elongation
GO:0006273 P lagging strand elongation
GO:0006287 P base-excision repair, gap-filling
GO:0006297 P nucleotide-excision repair, DNA gap filling
GO:0006974 P cellular response to DNA damage stimulus
GO:0008296 F 3'-5'-exodeoxyribonuclease activity
GO:0008310 F single-stranded DNA 3'-5' exodeoxyribonuclease activity
GO:0008408 F 3'-5' exonuclease activity
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0019233 P sensory perception of pain
GO:0022008 P neurogenesis
GO:0043625 C delta DNA polymerase complex
GO:0045004 P DNA replication proofreading
GO:0046872 F metal ion binding
GO:0051536 F iron-sulfur cluster binding
GO:0051539 F 4 iron, 4 sulfur cluster binding
GO:0071897 P DNA biosynthetic process
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
FPKM:2.98 TPM:1.33
1470 A_BomaMSG_c11564_g1_i1
664bp
LOW_QUALITY_PROTEIN:_adhesion_G_protein-coupled_receptor_A3_[Bombyx_mori]
FPKM:3.01 TPM:1.35
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