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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
1291 A_BomaMSG_c11381_g1_i1
891bp
zinc_finger_protein_26-like_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000790 C chromatin
GO:0001078 F DNA-binding transcription repressor activity, RNA polymerase II-specific
GO:0001649 P osteoblast differentiation
GO:0001837 P epithelial to mesenchymal transition
GO:0003198 P epithelial to mesenchymal transition involved in endocardial cushion formation
GO:0003273 P cell migration involved in endocardial cushion formation
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003682 F chromatin binding
GO:0003705 F DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006933 P negative regulation of cell adhesion involved in substrate-bound cell migration
GO:0007219 P Notch signaling pathway
GO:0007275 P multicellular organism development
GO:0007605 P sensory perception of sound
GO:0009314 P response to radiation
GO:0010839 P negative regulation of keratinocyte proliferation
GO:0010957 P negative regulation of vitamin D biosynthetic process
GO:0014032 P neural crest cell development
GO:0016477 P cell migration
GO:0030335 P positive regulation of cell migration
GO:0032331 P negative regulation of chondrocyte differentiation
GO:0032642 P regulation of chemokine production
GO:0033629 P negative regulation of cell adhesion mediated by integrin
GO:0035066 P positive regulation of histone acetylation
GO:0035414 P negative regulation of canonical Wnt signaling pathway
GO:0035921 P desmosome disassembly
GO:0043066 P negative regulation of apoptotic process
GO:0043473 P pigmentation
GO:0043518 P negative regulation of DNA damage response, signal transduction by p53 class mediator
GO:0043565 F sequence-specific DNA binding
GO:0044344 P cellular response to fibroblast growth factor stimulus
GO:0045600 P positive regulation of fat cell differentiation
GO:0045667 P regulation of osteoblast differentiation
GO:0046872 F metal ion binding
GO:0050872 P white fat cell differentiation
GO:0060021 P roof of mouth development
GO:0060070 P canonical Wnt signaling pathway
GO:0060429 P epithelium development
GO:0060536 P cartilage morphogenesis
GO:0060693 P regulation of branching involved in salivary gland morphogenesis
GO:0070563 P negative regulation of vitamin D receptor signaling pathway
GO:0071364 P cellular response to epidermal growth factor stimulus
GO:0071479 P cellular response to ionizing radiation
GO:0090090 P negative regulation of canonical Wnt signaling pathway
GO:1900387 P obsolete negative regulation of cell-cell adhesion by negative regulation of transcription from RNA polymerase II promoter
GO:1902230 P negative regulation of intrinsic apoptotic signaling pathway in response to DNA damage
GO:2000647 P negative regulation of stem cell proliferation
GO:2000810 P regulation of bicellular tight junction assembly
GO:2000811 P negative regulation of anoikis
GO:2001240 P negative regulation of extrinsic apoptotic signaling pathway in absence of ligand
FPKM:3.63 TPM:1.62
1292 A_BomaMSG_c11382_g1_i1
371bp
FPKM:3.65 TPM:1.63
1293 A_BomaMSG_c11383_g1_i1
841bp
FPKM:2.92 TPM:1.31
1294 A_BomaMSG_c11385_g1_i1
376bp
FPKM:3.57 TPM:1.60
1295 A_BomaMSG_c11386_g1_i1
862bp
FPKM:4.26 TPM:1.90
1296 A_BomaMSG_c11387_g1_i1
407bp
chondroitin_sulfate_synthase_1_[Bombyx_mori]
GO:0002063 P chondrocyte development
GO:0005576 C extracellular region
GO:0005794 C Golgi apparatus
GO:0008376 F acetylgalactosaminyltransferase activity
GO:0009954 P proximal/distal pattern formation
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016740 F transferase activity
GO:0016757 F glycosyltransferase activity
GO:0030206 P chondroitin sulfate biosynthetic process
GO:0030279 P negative regulation of ossification
GO:0031667 P response to nutrient levels
GO:0032580 C Golgi cisterna membrane
GO:0045880 P positive regulation of smoothened signaling pathway
GO:0046872 F metal ion binding
GO:0047238 F glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity
GO:0050510 F N-acetylgalactosaminyl-proteoglycan 3-beta-glucuronosyltransferase activity
GO:0051216 P cartilage development
GO:0051923 P sulfation
GO:0060349 P bone morphogenesis
FPKM:2.62 TPM:1.17
1297 A_BomaMSG_c11387_g2_i1
266bp
chondroitin_sulfate_synthase_1_[Bombyx_mori]
FPKM:1.15 TPM:0.52
1298 A_BomaMSG_c11389_g1_i1
435bp
FPKM:3.07 TPM:1.37
1299 A_BomaMSG_c1138_g1_i1
215bp
PREDICTED:_PHD_finger_protein_14-like_[Plutella_xylostella]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0003674 F molecular_function
GO:0005634 C nucleus
GO:0008270 F zinc ion binding
GO:0008285 P negative regulation of cell population proliferation
GO:0046872 F metal ion binding
GO:0048286 P lung alveolus development
GO:0072201 P negative regulation of mesenchymal cell proliferation
GO:2000584 P negative regulation of platelet-derived growth factor receptor-alpha signaling pathway
GO:2000791 P negative regulation of mesenchymal cell proliferation involved in lung development
FPKM:5.98 TPM:2.67
1300 A_BomaMSG_c11390_g1_i1
236bp
FPKM:1.54 TPM:0.69
1301 A_BomaMSG_c11391_g1_i1
744bp
lysophospholipid_acyltransferase_7_[Bombyx_mori]
GO:0006629 P lipid metabolic process
GO:0006644 P phospholipid metabolic process
GO:0008654 P phospholipid biosynthetic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016740 F transferase activity
GO:0016746 F acyltransferase activity
FPKM:3.61 TPM:1.61
1302 A_BomaMSG_c11391_g1_i2
563bp
lysophospholipid_acyltransferase_7_[Bombyx_mori]
GO:0006629 P lipid metabolic process
GO:0006644 P phospholipid metabolic process
GO:0008654 P phospholipid biosynthetic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016740 F transferase activity
GO:0016746 F acyltransferase activity
FPKM:1.98 TPM:0.89
1303 A_BomaMSG_c11393_g1_i1
216bp
FPKM:3.93 TPM:1.76
1304 A_BomaMSG_c11394_g1_i1
212bp
heparan-alpha-glucosaminide_N-acetyltransferase_[Bombyx_mori]
GO:0005764 C lysosome
GO:0005765 C lysosomal membrane
GO:0007041 P lysosomal transport
GO:0008152 P metabolic process
GO:0015019 F heparan-alpha-glucosaminide N-acetyltransferase activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016740 F transferase activity
GO:0016746 F acyltransferase activity
GO:0051259 P protein complex oligomerization
FPKM:2.08 TPM:0.93
1305 A_BomaMSG_c11395_g1_i1
257bp
LOW_QUALITY_PROTEIN:_supporter_of_activation_of_yellow_protein_[Bombyx_mori]
FPKM:4.37 TPM:1.95
1306 A_BomaMSG_c11397_g1_i1
231bp
FPKM:1.63 TPM:0.73
1307 A_BomaMSG_c11402_g1_i1
250bp
FPKM:11.32 TPM:5.06
1308 A_BomaMSG_c11403_g1_i1
657bp
cleavage_and_polyadenylation_specificity_factor_subunit_1_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0003730 F mRNA 3'-UTR binding
GO:0005634 C nucleus
GO:0005847 C mRNA cleavage and polyadenylation specificity factor complex
GO:0006378 P mRNA polyadenylation
GO:0006379 P mRNA cleavage
GO:0006397 P mRNA processing
GO:0017022 F myosin binding
GO:0022008 P neurogenesis
FPKM:2.79 TPM:1.25
1309 A_BomaMSG_c11404_g1_i1
361bp
A_disintegrin_and_metalloproteinase_with_thrombospondin_motifs_7_[Bombyx_mori]
GO:0004222 F metalloendopeptidase activity
GO:0005576 C extracellular region
GO:0005578 C extracellular matrix
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0008237 F metallopeptidase activity
GO:0008270 F zinc ion binding
GO:0009986 C cell surface
GO:0016787 F hydrolase activity
GO:0031012 C extracellular matrix
GO:0032331 P negative regulation of chondrocyte differentiation
GO:0046872 F metal ion binding
GO:0051603 P proteolysis involved in cellular protein catabolic process
GO:0071347 P cellular response to interleukin-1
GO:0071356 P cellular response to tumor necrosis factor
GO:0071773 P cellular response to BMP stimulus
GO:0098779 P positive regulation of mitophagy in response to mitochondrial depolarization
FPKM:2.55 TPM:1.14
1310 A_BomaMSG_c11405_g1_i1
222bp
FPKM:4.54 TPM:2.03
1311 A_BomaMSG_c11406_g1_i1
912bp
uncharacterized_protein_LOC101746064_[Bombyx_mori]
FPKM:2.92 TPM:1.30
1312 A_BomaMSG_c11407_g1_i1
275bp
uncharacterized_protein_LOC105842522_[Bombyx_mori]
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0008152 P metabolic process
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
FPKM:7.50 TPM:3.35
1313 A_BomaMSG_c11409_g1_i1
235bp
FPKM:2.33 TPM:1.04
1314 A_BomaMSG_c11410_g1_i1
583bp
uncharacterized_protein_LOC101738884_[Bombyx_mori]
FPKM:5.91 TPM:2.64
1315 A_BomaMSG_c11411_g1_i1
223bp
splicing_factor,_suppressor_of_white-apricot_homolog_isoform_X2_[Bombyx_mori]
GO:0000395 P mRNA 5'-splice site recognition
GO:0000398 P mRNA splicing, via spliceosome
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005681 C spliceosomal complex
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006396 P RNA processing
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0016607 C nuclear speck
FPKM:3.59 TPM:1.60
1316 A_BomaMSG_c11411_g2_i1
874bp
splicing_factor,_suppressor_of_white-apricot_homolog_isoform_X2_[Bombyx_mori]
GO:0000395 P mRNA 5'-splice site recognition
GO:0000398 P mRNA splicing, via spliceosome
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005681 C spliceosomal complex
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006396 P RNA processing
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0016607 C nuclear speck
FPKM:2.32 TPM:1.04
1317 A_BomaMSG_c11413_g1_i1
325bp
FPKM:1.15 TPM:0.51
1318 A_BomaMSG_c11413_g2_i1
228bp
FPKM:7.59 TPM:3.39
1319 A_BomaMSG_c11414_g1_i1
238bp
FPKM:0.00 TPM:0.00
1320 A_BomaMSG_c11414_g1_i2
256bp
FPKM:5.03 TPM:2.25
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