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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
1231 A_BomaMSG_c11330_g1_i2
215bp
FPKM:0.70 TPM:0.31
1232 A_BomaMSG_c11331_g1_i1
585bp
FPKM:3.40 TPM:1.52
1233 A_BomaMSG_c11332_g1_i1
285bp
FPKM:2.48 TPM:1.11
1234 A_BomaMSG_c11333_g1_i1
503bp
vacuolar_protein_sorting-associated_protein_13D_[Bombyx_mori]
GO:0005622 C intracellular anatomical structure
GO:0006623 P protein targeting to vacuole
GO:0019898 C extrinsic component of membrane
GO:0045053 P protein retention in Golgi apparatus
GO:0070062 C extracellular exosome
FPKM:2.86 TPM:1.28
1235 A_BomaMSG_c11334_g1_i1
421bp
uncharacterized_protein_LOC778510_[Bombyx_mori]
FPKM:3.71 TPM:1.66
1236 A_BomaMSG_c11334_g1_i2
643bp
uncharacterized_protein_LOC778510_[Bombyx_mori]
FPKM:38.10 TPM:17.03
1237 A_BomaMSG_c11335_g1_i1
296bp
FPKM:0.00 TPM:0.00
1238 A_BomaMSG_c11335_g1_i2
292bp
FPKM:2.36 TPM:1.06
1239 A_BomaMSG_c11335_g1_i3
323bp
FPKM:0.00 TPM:0.00
1240 A_BomaMSG_c11337_g1_i1
531bp
SPRY_domain-containing_SOCS_box_protein_3_[Bombyx_mori]
GO:0005622 C intracellular anatomical structure
GO:0016567 P protein ubiquitination
GO:0035556 P intracellular signal transduction
FPKM:4.06 TPM:1.82
1241 A_BomaMSG_c11338_g1_i1
628bp
uncharacterized_protein_LOC101738513_[Bombyx_mori]
FPKM:3.52 TPM:1.57
1242 A_BomaMSG_c11339_g1_i1
494bp
OTU_domain-containing_protein_7B_[Bombyx_mori]
FPKM:1.96 TPM:0.87
1243 A_BomaMSG_c11340_g1_i1
230bp
FPKM:12.35 TPM:5.52
1244 A_BomaMSG_c11341_g1_i1
783bp
cadherin-87A_[Bombyx_mori]
GO:0005509 F calcium ion binding
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0007155 P cell adhesion
GO:0007156 P homophilic cell adhesion via plasma membrane adhesion molecules
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016339 P calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules
GO:0044331 P cell-cell adhesion mediated by cadherin
GO:0046872 F metal ion binding
FPKM:2.66 TPM:1.19
1245 A_BomaMSG_c11342_g1_i1
416bp
FPKM:2.78 TPM:1.24
1246 A_BomaMSG_c11343_g1_i1
643bp
midasin_isoform_X1_[Bombyx_mori]
FPKM:3.55 TPM:1.59
1247 A_BomaMSG_c11344_g1_i1
603bp
FPKM:4.31 TPM:1.93
1248 A_BomaMSG_c11345_g1_i1
379bp
pre-mRNA-splicing_factor_SYF1_[Bombyx_mori]
GO:0000349 P generation of catalytic spliceosome for first transesterification step
GO:0000974 C Prp19 complex
GO:0001824 P blastocyst development
GO:0003674 F molecular_function
GO:0005634 C nucleus
GO:0005681 C spliceosomal complex
GO:0006281 P DNA repair
GO:0006283 P transcription-coupled nucleotide-excision repair
GO:0006351 P transcription, DNA-templated
GO:0006396 P RNA processing
GO:0006397 P mRNA processing
GO:0006974 P cellular response to DNA damage stimulus
GO:0008380 P RNA splicing
GO:0016020 C membrane
GO:0021987 P cerebral cortex development
GO:0071010 C prespliceosome
GO:0071012 C catalytic step 1 spliceosome
GO:0071013 C catalytic step 2 spliceosome
GO:0071014 C post-mRNA release spliceosomal complex
FPKM:1.76 TPM:0.79
1249 A_BomaMSG_c11346_g1_i1
408bp
WASH_complex_subunit_4_isoform_X1_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005768 C endosome
GO:0006887 P exocytosis
GO:0007032 P endosome organization
GO:0016197 P endosomal transport
GO:0030041 P actin filament polymerization
GO:0044351 P macropinocytosis
GO:0044655 P phagosome reneutralization
GO:0061462 P protein localization to lysosome
GO:0061474 C phagolysosome membrane
GO:0071203 C WASH complex
FPKM:4.43 TPM:1.98
1250 A_BomaMSG_c11347_g1_i1
244bp
cycle_like_factor_b_isoform_X1_[Bombyx_mori]
GO:0000976 F transcription cis-regulatory region binding
GO:0001047 F core promoter sequence-specific DNA binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0005667 C transcription regulator complex
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007283 P spermatogenesis
GO:0007623 P circadian rhythm
GO:0016605 C PML body
GO:0032007 P negative regulation of TOR signaling
GO:0032922 P circadian regulation of gene expression
GO:0033391 C chromatoid body
GO:0042634 P regulation of hair cycle
GO:0042753 P positive regulation of circadian rhythm
GO:0043161 P proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0043565 F sequence-specific DNA binding
GO:0045599 P negative regulation of fat cell differentiation
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0046983 F protein dimerization activity
GO:0048511 P rhythmic process
GO:0050767 P regulation of neurogenesis
GO:0050796 P regulation of insulin secretion
GO:0051726 P regulation of cell cycle
GO:0051775 P response to redox state
GO:0070888 F E-box binding
GO:0090263 P positive regulation of canonical Wnt signaling pathway
GO:0090403 P oxidative stress-induced premature senescence
GO:2000074 P regulation of type B pancreatic cell development
GO:2000323 P negative regulation of glucocorticoid receptor signaling pathway
GO:2000772 P regulation of cellular senescence
GO:2001016 P positive regulation of skeletal muscle cell differentiation
FPKM:3.22 TPM:1.44
1251 A_BomaMSG_c11347_g1_i2
460bp
cycle_like_factor_b_isoform_X3_[Bombyx_mori]
GO:0000976 F transcription cis-regulatory region binding
GO:0001047 F core promoter sequence-specific DNA binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0005667 C transcription regulator complex
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007283 P spermatogenesis
GO:0016605 C PML body
GO:0032007 P negative regulation of TOR signaling
GO:0032922 P circadian regulation of gene expression
GO:0033391 C chromatoid body
GO:0042634 P regulation of hair cycle
GO:0042753 P positive regulation of circadian rhythm
GO:0043161 P proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0043565 F sequence-specific DNA binding
GO:0045599 P negative regulation of fat cell differentiation
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0046983 F protein dimerization activity
GO:0048511 P rhythmic process
GO:0050767 P regulation of neurogenesis
GO:0050796 P regulation of insulin secretion
GO:0051726 P regulation of cell cycle
GO:0070888 F E-box binding
GO:0090263 P positive regulation of canonical Wnt signaling pathway
GO:0090403 P oxidative stress-induced premature senescence
GO:2000074 P regulation of type B pancreatic cell development
GO:2000323 P negative regulation of glucocorticoid receptor signaling pathway
GO:2000772 P regulation of cellular senescence
GO:2001016 P positive regulation of skeletal muscle cell differentiation
FPKM:2.48 TPM:1.11
1252 A_BomaMSG_c11348_g1_i1
418bp
FPKM:3.26 TPM:1.46
1253 A_BomaMSG_c11349_g1_i1
497bp
DNA-directed_RNA_polymerase_III_subunit_RPC3_isoform_X1_[Bombyx_mori]
GO:0001056 F RNA polymerase III activity
GO:0002376 P immune system process
GO:0003677 F DNA binding
GO:0003899 F DNA-directed 5'-3' RNA polymerase activity
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005666 C RNA polymerase III complex
GO:0006351 P transcription, DNA-templated
GO:0006383 P transcription by RNA polymerase III
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0032728 P positive regulation of interferon-beta production
GO:0045087 P innate immune response
GO:0045089 P positive regulation of innate immune response
GO:0051607 P defense response to virus
FPKM:2.33 TPM:1.04
1254 A_BomaMSG_c11350_g1_i1
280bp
FPKM:3.09 TPM:1.38
1255 A_BomaMSG_c11351_g1_i1
246bp
FPKM:1.87 TPM:0.84
1256 A_BomaMSG_c11351_g1_i2
264bp
FPKM:6.04 TPM:2.70
1257 A_BomaMSG_c11352_g1_i1
814bp
LOW_QUALITY_PROTEIN:_partitioning_defective_3_homolog_[Bombyx_mori]
FPKM:3.24 TPM:1.45
1258 A_BomaMSG_c11353_g1_i1
439bp
FPKM:8.38 TPM:3.74
1259 A_BomaMSG_c11354_g1_i1
527bp
FPKM:4.64 TPM:2.07
1260 A_BomaMSG_c11355_g1_i1
679bp
ubiquitin-fold_modifier-conjugating_enzyme_1_[Bombyx_mori]
FPKM:35.11 TPM:15.69
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