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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
1111 A_BomaMSG_c11231_g1_i1
343bp
FPKM:12.88 TPM:5.76
1112 A_BomaMSG_c11232_g1_i1
211bp
FPKM:5.28 TPM:2.36
1113 A_BomaMSG_c11233_g1_i1
433bp
FPKM:3.80 TPM:1.70
1114 A_BomaMSG_c11234_g1_i1
318bp
FPKM:2.40 TPM:1.07
1115 A_BomaMSG_c11235_g1_i1
332bp
protein_tramtrack,_beta_isoform_isoform_X5_[Bombyx_mori]
GO:0000794 C condensed nuclear chromosome
GO:0001700 P embryonic development via the syncytial blastoderm
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005700 C polytene chromosome
GO:0006342 P heterochromatin assembly
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0007275 P multicellular organism development
GO:0007426 P tracheal outgrowth, open tracheal system
GO:0007435 P salivary gland morphogenesis
GO:0016458 P obsolete gene silencing
GO:0016568 P chromatin organization
GO:0031208 F POZ domain binding
GO:0031519 C PcG protein complex
GO:0035167 P larval lymph gland hemopoiesis
GO:0042803 F protein homodimerization activity
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0045893 P positive regulation of transcription, DNA-templated
FPKM:2.58 TPM:1.15
1116 A_BomaMSG_c11235_g2_i1
511bp
protein_tramtrack,_beta_isoform_isoform_X5_[Bombyx_mori]
GO:0001655 P urogenital system development
GO:0003676 F nucleic acid binding
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007507 P heart development
GO:0046872 F metal ion binding
GO:0048793 P pronephros development
GO:0048863 P stem cell differentiation
GO:0050679 P positive regulation of epithelial cell proliferation
GO:0072075 P metanephric mesenchyme development
GO:0072111 P cell proliferation involved in kidney development
GO:0072143 P mesangial cell development
GO:0072162 P metanephric mesenchymal cell differentiation
GO:0072168 P specification of anterior mesonephric tubule identity
GO:0072169 P specification of posterior mesonephric tubule identity
GO:0072183 P negative regulation of nephron tubule epithelial cell differentiation
GO:0072184 P renal vesicle progenitor cell differentiation
GO:0072190 P ureter urothelium development
GO:0072207 P metanephric epithelium development
GO:0072208 P metanephric smooth muscle tissue development
GO:0072234 P metanephric nephron tubule development
GO:0072239 P metanephric glomerulus vasculature development
GO:0072259 P metanephric interstitial fibroblast development
GO:2000543 P positive regulation of gastrulation
FPKM:2.42 TPM:1.08
1117 A_BomaMSG_c11236_g1_i1
391bp
piggyBac_transposable_element-derived_protein_4-like_[Helicoverpa_armigera]
FPKM:4.19 TPM:1.87
1118 A_BomaMSG_c11236_g2_i1
582bp
uncharacterized_protein_LOC105842611_isoform_X1_[Bombyx_mori]
FPKM:0.95 TPM:0.43
1119 A_BomaMSG_c11236_g2_i2
596bp
uncharacterized_protein_LOC105842611_isoform_X1_[Bombyx_mori]
FPKM:1.19 TPM:0.53
1120 A_BomaMSG_c11237_g1_i1
357bp
zinc_finger_protein_2_homolog_[Bombyx_mori]
FPKM:1.30 TPM:0.58
1121 A_BomaMSG_c11237_g1_i2
214bp
zinc_finger_protein_2_homolog_[Bombyx_mori]
FPKM:0.00 TPM:0.00
1122 A_BomaMSG_c11237_g1_i3
289bp
zinc_finger_protein_2_homolog_[Bombyx_mori]
FPKM:0.00 TPM:0.00
1123 A_BomaMSG_c11238_g1_i1
401bp
dystrophin,_isoforms_A/C/F/G/H,_partial_[Bombyx_mori]
FPKM:3.75 TPM:1.68
1124 A_BomaMSG_c11239_g1_i1
274bp
PREDICTED:_uncharacterized_protein_LOC105204256_[Solenopsis_invicta]
FPKM:2.16 TPM:0.97
1125 A_BomaMSG_c11240_g1_i1
221bp
FPKM:0.92 TPM:0.41
1126 A_BomaMSG_c11241_g1_i1
266bp
FPKM:4.03 TPM:1.80
1127 A_BomaMSG_c11241_g2_i1
772bp
zinc_finger_protein_845_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000785 C chromatin
GO:0000981 F DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0001046 F core promoter sequence-specific DNA binding
GO:0001047 F core promoter sequence-specific DNA binding
GO:0001078 F DNA-binding transcription repressor activity, RNA polymerase II-specific
GO:0001228 F DNA-binding transcription activator activity, RNA polymerase II-specific
GO:0002244 P hematopoietic progenitor cell differentiation
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003682 F chromatin binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005829 C cytosol
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006366 P transcription by RNA polymerase II
GO:0008134 F transcription factor binding
GO:0008285 P negative regulation of cell population proliferation
GO:0010629 P negative regulation of gene expression
GO:0015271 F outward rectifier potassium channel activity
GO:0017053 C transcription repressor complex
GO:0032348 P negative regulation of aldosterone biosynthetic process
GO:0032403 F protein-containing complex binding
GO:0035690 P cellular response to xenobiotic stimulus
GO:0043065 P positive regulation of apoptotic process
GO:0043234 C protein-containing complex
GO:0043280 P positive regulation of cysteine-type endopeptidase activity involved in apoptotic process
GO:0043922 P negative regulation by host of viral transcription
GO:0044212 F transcription cis-regulatory region binding
GO:0045665 P negative regulation of neuron differentiation
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0045955 P negative regulation of calcium ion-dependent exocytosis
GO:0046676 P negative regulation of insulin secretion
GO:0046872 F metal ion binding
GO:0050768 P negative regulation of neurogenesis
GO:0060379 P cardiac muscle cell myoblast differentiation
GO:0070933 P histone H4 deacetylation
GO:0071257 P cellular response to electrical stimulus
GO:0071385 P cellular response to glucocorticoid stimulus
GO:0071805 P potassium ion transmembrane transport
GO:2000065 P negative regulation of cortisol biosynthetic process
GO:2000706 P negative regulation of dense core granule biogenesis
GO:2000740 P negative regulation of mesenchymal stem cell differentiation
GO:2000798 P negative regulation of amniotic stem cell differentiation
FPKM:2.49 TPM:1.11
1128 A_BomaMSG_c11242_g1_i1
466bp
titin_[Helicoverpa_armigera]
FPKM:2.13 TPM:0.95
1129 A_BomaMSG_c11243_g1_i1
754bp
FAST_kinase_domain-containing_protein_5,_mitochondrial_[Bombyx_mori]
FPKM:2.90 TPM:1.30
1130 A_BomaMSG_c11244_g1_i1
520bp
E3_ubiquitin-protein_ligase_UBR4_[Bombyx_mori]
GO:0005516 F calmodulin binding
GO:0007275 P multicellular organism development
GO:0007286 P spermatid development
GO:0007291 P sperm individualization
GO:0007399 P nervous system development
GO:0007601 P visual perception
GO:0008270 F zinc ion binding
GO:0030154 P cell differentiation
GO:0046872 F metal ion binding
GO:0050896 P response to stimulus
FPKM:7.09 TPM:3.17
1131 A_BomaMSG_c11245_g1_i1
775bp
dynein_heavy_chain,_cytoplasmic_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000776 C kinetochore
GO:0003774 F cytoskeletal motor activity
GO:0003777 F microtubule motor activity
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005794 C Golgi apparatus
GO:0005856 C cytoskeleton
GO:0005868 C cytoplasmic dynein complex
GO:0005874 C microtubule
GO:0005875 C microtubule associated complex
GO:0005938 C cell cortex
GO:0006886 P intracellular protein transport
GO:0007018 P microtubule-based movement
GO:0007051 P spindle organization
GO:0007052 P mitotic spindle organization
GO:0007067 P mitotic cell cycle
GO:0007098 P centrosome cycle
GO:0007279 P pole cell formation
GO:0007282 P cystoblast division
GO:0007294 P germarium-derived oocyte fate determination
GO:0007298 P border follicle cell migration
GO:0007301 P female germline ring canal formation
GO:0007312 P oocyte nucleus migration involved in oocyte dorsal/ventral axis specification
GO:0007349 P cellularization
GO:0007405 P neuroblast proliferation
GO:0008088 P axo-dendritic transport
GO:0008090 P retrograde axonal transport
GO:0008298 P intracellular mRNA localization
GO:0008569 F minus-end-directed microtubule motor activity
GO:0016319 P mushroom body development
GO:0016887 F ATP hydrolysis activity
GO:0030071 P regulation of mitotic metaphase/anaphase transition
GO:0030286 C dynein complex
GO:0030529 C ribonucleoprotein complex
GO:0030723 P ovarian fusome organization
GO:0034063 P stress granule assembly
GO:0034501 P protein localization to kinetochore
GO:0035011 P melanotic encapsulation of foreign target
GO:0040001 P establishment of mitotic spindle localization
GO:0040003 P chitin-based cuticle development
GO:0042623 F ATP hydrolysis activity
GO:0043005 C neuron projection
GO:0045169 C fusome
GO:0045172 C germline ring canal
GO:0045197 P establishment or maintenance of epithelial cell apical/basal polarity
GO:0045198 P establishment of epithelial cell apical/basal polarity
GO:0045478 P fusome organization
GO:0045505 F dynein intermediate chain binding
GO:0046604 P positive regulation of mitotic centrosome separation
GO:0047497 P mitochondrion transport along microtubule
GO:0048134 P germ-line cyst formation
GO:0048311 P mitochondrion distribution
GO:0048477 P oogenesis
GO:0048813 P dendrite morphogenesis
GO:0050658 P RNA transport
GO:0051237 P maintenance of RNA location
GO:0051642 P centrosome localization
GO:0051683 P establishment of Golgi localization
GO:0051959 F dynein light intermediate chain binding
GO:1904115 C axon cytoplasm
GO:1904801 P positive regulation of neuron remodeling
FPKM:3.45 TPM:1.54
1132 A_BomaMSG_c11246_g1_i1
443bp
multidrug_resistance_protein_homolog_49_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0001666 P response to hypoxia
GO:0005524 F ATP binding
GO:0005887 C integral component of plasma membrane
GO:0006810 P transport
GO:0006855 P xenobiotic transmembrane transport
GO:0008152 P metabolic process
GO:0008354 P germ cell migration
GO:0008559 F ABC-type xenobiotic transporter activity
GO:0015238 F xenobiotic transmembrane transporter activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016787 F hydrolase activity
GO:0016887 F ATP hydrolysis activity
GO:0031427 P response to methotrexate
GO:0042626 F ATPase-coupled transmembrane transporter activity
GO:0042908 P xenobiotic transport
GO:0055085 P transmembrane transport
FPKM:5.05 TPM:2.26
1133 A_BomaMSG_c11247_g1_i1
230bp
fungal_protease_inhibitor_F-like_[Bombyx_mori]
FPKM:5.76 TPM:2.58
1134 A_BomaMSG_c11248_g1_i1
442bp
SHC-transforming_protein_1_[Bombyx_mori]
GO:0000165 P MAPK cascade
GO:0000187 P obsolete activation of MAPK activity
GO:0005088 F guanyl-nucleotide exchange factor activity
GO:0005515 F protein binding
GO:0005575 C cellular_component
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0007169 P transmembrane receptor protein tyrosine kinase signaling pathway
GO:0007265 P Ras protein signal transduction
GO:0030971 F receptor tyrosine kinase binding
GO:0035556 P intracellular signal transduction
GO:0043547 P positive regulation of GTPase activity
GO:0048010 P vascular endothelial growth factor receptor signaling pathway
FPKM:1.61 TPM:0.72
1135 A_BomaMSG_c11249_g1_i1
432bp
sphingosine-1-phosphate_phosphatase_1_[Bombyx_mori]
FPKM:2.39 TPM:1.07
1136 A_BomaMSG_c1124_g1_i1
836bp
LOW_QUALITY_PROTEIN:_CD109_antigen,_partial_[Bombyx_mori]
GO:0001933 P negative regulation of protein phosphorylation
GO:0001942 P hair follicle development
GO:0004866 F endopeptidase inhibitor activity
GO:0004867 F serine-type endopeptidase inhibitor activity
GO:0005576 C extracellular region
GO:0005615 C extracellular space
GO:0005886 C plasma membrane
GO:0009986 C cell surface
GO:0010466 P negative regulation of peptidase activity
GO:0010839 P negative regulation of keratinocyte proliferation
GO:0010951 P negative regulation of endopeptidase activity
GO:0016020 C membrane
GO:0030414 F peptidase inhibitor activity
GO:0030512 P negative regulation of transforming growth factor beta receptor signaling pathway
GO:0031225 C anchored component of membrane
GO:0045616 P regulation of keratinocyte differentiation
GO:0050431 F transforming growth factor beta binding
GO:0061045 P negative regulation of wound healing
GO:0072675 P osteoclast fusion
FPKM:1.77 TPM:0.79
1137 A_BomaMSG_c11250_g1_i1
713bp
FPKM:4.07 TPM:1.82
1138 A_BomaMSG_c11251_g1_i1
285bp
FPKM:2.98 TPM:1.33
1139 A_BomaMSG_c11252_g1_i1
229bp
hypothetical_protein_TSTA_040370_[Talaromyces_stipitatus_ATCC_10500]
FPKM:8.33 TPM:3.72
1140 A_BomaMSG_c11253_g1_i1
389bp
uncharacterized_protein_LOC101736599_[Bombyx_mori]
FPKM:4.50 TPM:2.01
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