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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
1051 A_BomaMSG_c11170_g1_i1
228bp
FPKM:6.75 TPM:3.01
1052 A_BomaMSG_c11172_g1_i1
377bp
FPKM:4.44 TPM:1.99
1053 A_BomaMSG_c11173_g1_i1
482bp
hypothetical_protein_RR46_11480_[Papilio_xuthus]
FPKM:41.75 TPM:18.66
1054 A_BomaMSG_c11174_g1_i1
239bp
reverse_transcriptase_-_silkworm_transposon_Pao
FPKM:4.47 TPM:2.00
1055 A_BomaMSG_c11175_g1_i1
373bp
FPKM:0.90 TPM:0.40
1056 A_BomaMSG_c11176_g1_i1
682bp
FPKM:4.05 TPM:1.81
1057 A_BomaMSG_c11177_g1_i1
403bp
FPKM:4.78 TPM:2.14
1058 A_BomaMSG_c11179_g1_i1
362bp
FPKM:12.36 TPM:5.53
1059 A_BomaMSG_c11180_g1_i1
441bp
acidic_fibroblast_growth_factor_intracellular-binding_protein_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005739 C mitochondrion
GO:0008543 P fibroblast growth factor receptor signaling pathway
GO:0012505 C endomembrane system
GO:0016020 C membrane
GO:0017134 F fibroblast growth factor binding
GO:0070062 C extracellular exosome
GO:0070527 P platelet aggregation
FPKM:1.21 TPM:0.54
1060 A_BomaMSG_c11180_g1_i2
638bp
acidic_fibroblast_growth_factor_intracellular-binding_protein_[Bombyx_mori]
GO:0005634 C nucleus
GO:0012505 C endomembrane system
GO:0016020 C membrane
GO:0017134 F fibroblast growth factor binding
GO:0070062 C extracellular exosome
GO:0070527 P platelet aggregation
FPKM:2.63 TPM:1.18
1061 A_BomaMSG_c11180_g1_i3
664bp
acidic_fibroblast_growth_factor_intracellular-binding_protein_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005739 C mitochondrion
GO:0008543 P fibroblast growth factor receptor signaling pathway
GO:0012505 C endomembrane system
GO:0016020 C membrane
GO:0017134 F fibroblast growth factor binding
GO:0070062 C extracellular exosome
GO:0070527 P platelet aggregation
FPKM:1.27 TPM:0.57
1062 A_BomaMSG_c11181_g1_i1
236bp
LOW_QUALITY_PROTEIN:_protein_CLEC16A_[Bombyx_mori]
GO:0005764 C lysosome
GO:0005765 C lysosomal membrane
GO:0005768 C endosome
GO:0006914 P autophagy
GO:0010008 C endosome membrane
GO:0016020 C membrane
FPKM:3.85 TPM:1.72
1063 A_BomaMSG_c11182_g1_i1
606bp
protein_KBP_homolog_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005856 C cytoskeleton
GO:0006839 P mitochondrial transport
GO:0007399 P nervous system development
GO:0019894 F kinesin binding
FPKM:3.33 TPM:1.49
1064 A_BomaMSG_c11182_g1_i2
377bp
protein_KBP_homolog_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005856 C cytoskeleton
GO:0006839 P mitochondrial transport
GO:0007399 P nervous system development
GO:0019894 F kinesin binding
FPKM:0.42 TPM:0.19
1065 A_BomaMSG_c11183_g1_i1
242bp
LOW_QUALITY_PROTEIN:_DNA-directed_RNA_polymerase_I_subunit_RPA1_[Bombyx_mori]
GO:0001054 F RNA polymerase I activity
GO:0003677 F DNA binding
GO:0003899 F DNA-directed 5'-3' RNA polymerase activity
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0005736 C RNA polymerase I complex
GO:0006351 P transcription, DNA-templated
GO:0006360 P transcription by RNA polymerase I
GO:0008270 F zinc ion binding
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0046872 F metal ion binding
FPKM:0.00 TPM:0.00
1066 A_BomaMSG_c11183_g1_i2
594bp
LOW_QUALITY_PROTEIN:_DNA-directed_RNA_polymerase_I_subunit_RPA1_[Bombyx_mori]
GO:0001054 F RNA polymerase I activity
GO:0003677 F DNA binding
GO:0003899 F DNA-directed 5'-3' RNA polymerase activity
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0005736 C RNA polymerase I complex
GO:0006351 P transcription, DNA-templated
GO:0006360 P transcription by RNA polymerase I
GO:0008270 F zinc ion binding
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0046872 F metal ion binding
FPKM:2.88 TPM:1.29
1067 A_BomaMSG_c11184_g1_i1
528bp
PREDICTED:_39S_ribosomal_protein_L36,_mitochondrial_[Amyelois_transitella]
GO:0003735 F structural constituent of ribosome
GO:0005622 C intracellular anatomical structure
GO:0005739 C mitochondrion
GO:0005762 C mitochondrial large ribosomal subunit
GO:0005840 C ribosome
GO:0006412 P translation
GO:0030529 C ribonucleoprotein complex
GO:0032543 P mitochondrial translation
GO:0042254 P ribosome biogenesis
FPKM:8.37 TPM:3.74
1068 A_BomaMSG_c11185_g1_i1
349bp
FPKM:4.73 TPM:2.11
1069 A_BomaMSG_c11186_g1_i1
732bp
FPKM:2.78 TPM:1.24
1070 A_BomaMSG_c11187_g1_i1
405bp
PREDICTED:_uncharacterized_protein_LOC108772486_[Cyphomyrmex_costatus]
GO:0000166 F nucleotide binding
GO:0000943 C retrotransposon nucleocapsid
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0003824 F catalytic activity
GO:0003887 F DNA-directed DNA polymerase activity
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0004523 F RNA-DNA hybrid ribonuclease activity
GO:0004540 F ribonuclease activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006310 P DNA recombination
GO:0006508 P proteolysis
GO:0008152 P metabolic process
GO:0008233 F peptidase activity
GO:0008270 F zinc ion binding
GO:0015074 P DNA integration
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0019076 P viral release from host cell
GO:0032197 P transposition, RNA-mediated
GO:0046872 F metal ion binding
GO:0071897 P DNA biosynthetic process
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0090501 P RNA phosphodiester bond hydrolysis
GO:0090502 P RNA phosphodiester bond hydrolysis, endonucleolytic
FPKM:3.16 TPM:1.41
1071 A_BomaMSG_c11187_g2_i1
206bp
retroelement_polyprotein_[Lasius_niger]
FPKM:3.41 TPM:1.52
1072 A_BomaMSG_c11188_g1_i1
259bp
FPKM:3.68 TPM:1.64
1073 A_BomaMSG_c1118_g1_i1
207bp
ADAM_17-like_protease_isoform_X1_[Bombyx_mori]
GO:0004222 F metalloendopeptidase activity
GO:0006508 P proteolysis
GO:0006509 P membrane protein ectodomain proteolysis
GO:0008233 F peptidase activity
GO:0008237 F metallopeptidase activity
GO:0008270 F zinc ion binding
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
FPKM:4.48 TPM:2.00
1074 A_BomaMSG_c11190_g1_i1
524bp
succinate_dehydrogenase_[ubiquinone]_flavoprotein_subunit,_mitochondrial_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0005749 C mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)
GO:0006099 P tricarboxylic acid cycle
GO:0008177 F succinate dehydrogenase (ubiquinone) activity
GO:0016020 C membrane
GO:0016491 F oxidoreductase activity
GO:0016627 F oxidoreductase activity, acting on the CH-CH group of donors
GO:0022900 P electron transport chain
GO:0022904 P respiratory electron transport chain
GO:0050660 F flavin adenine dinucleotide binding
GO:0055114 P obsolete oxidation-reduction process
FPKM:3.24 TPM:1.45
1075 A_BomaMSG_c11191_g1_i1
553bp
uncharacterized_protein_LOC101740483_[Bombyx_mori]
FPKM:3.51 TPM:1.57
1076 A_BomaMSG_c11193_g1_i1
319bp
FPKM:2.78 TPM:1.24
1077 A_BomaMSG_c11194_g1_i1
251bp
hypothetical_protein_L484_002552_[Morus_notabilis]
FPKM:3.96 TPM:1.77
1078 A_BomaMSG_c11195_g1_i1
613bp
transcriptional_protein_SWT1_isoform_X2_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
FPKM:1.45 TPM:0.65
1079 A_BomaMSG_c11197_g1_i1
311bp
uncharacterized_protein_LOC101740406_[Bombyx_mori]
FPKM:5.84 TPM:2.61
1080 A_BomaMSG_c11198_g1_i1
412bp
G_patch_domain-containing_protein_1_homolog_[Bombyx_mori]
GO:0000398 P mRNA splicing, via spliceosome
GO:0003674 F molecular_function
GO:0003676 F nucleic acid binding
GO:0006397 P mRNA processing
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
FPKM:3.59 TPM:1.61
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